Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007365

Physical Location & Seq

Genomic Coordinates Reverse (-)

3779140 .. 3780739

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTGGAATGTACGGTCAAGATGGCGATGGCGCCCCTCCTCCATACGGATCTAGCGGCGGCGGTGGCTATGGTGGCTCTGGCGGGTACGGAGGCGGTTCTGGTGGTTATGGAGGTGGTGGTGGCGGTGGAGGCTATGGTGGAAGCGGCGGTGGTGGCTATGGAGGTAAGGGCAGCGATGGTTATGGAGGCGGTGGCGGACGTGGCGGTCGAGGTGGAGGATATCAAGGAGATCGCGGTGGTGGCGGCAGAGGTGGTGACCGCGGTGGCGGCGGTAGAGGTGGCCGCGGTGGCAGTGGAAGAGATGGCGATTGGCTGTGCCCTAATCCAGGCTGTGGGAATTTGAACTTTGCAAGAAGAGTTGAGTGTAACAAGTGTGGCACTCCCTCTCCTTCGGGTGCCGCCGGTGGTGATCGTGGCAGTGGTGGTGGAGGCAATTATAACAGAGGAGGAACTGGTGGTGGTAACCGTGGTGGTAGGGGTGGTAACTATGATGGGGGTCGAAGTGGTAACTATGATGGTGGTCGAAGTGGTAACTATGAAGGAGGTAAAGGTAGCAGTTATGACGAAGGTAGAGGCGGTAGTTATGAAAGTAGAGGTGAAGGTGGTAGTAGGGGTGGTTCTTATGGTGGTAGCCAAGGAAGAGATGATGGGGGTTACGGTCAGGTTCCTCCAAATGCACCACCGTCCTATGGTACAGCTGGAGGCAATTACCCATCTTACAATGCTAGTTATGGAACAGATGCTGTTCCGCCTCCTACAAGTTATACTGGTGGACCTGCATCATATCCCCCATCTTATGGTGGTCCTGCAGGCGGTTATGGTGGTGATGGTCCTGGTGATGCAAGGGGTGGTGCCCGAGGGGGCCCTCCTGCTAAATATGATGGTGGATACGGTGCTGGTGGTCGTGGTGGATATGGAAGTGCTGCTACGGAAGCCCCAGCTAAGGTGAAGCAGTGCGACCAGAATTGTGATGATACTTGTGGCAATGCTAGAATCTACATATCAAACTTGCCACCAGATGTTACTGTTGACGAACTTCAGCAGCTCTTTGGAGGCATTGGACAAGTGGGAAGAATCAAACAGAAACGTGGCTATAAGGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

RRM_1 zf-RanBP

Protein Analysis

370

Amino Acids

35.1

Weight (kDa)

8.8

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58470 AT5G58470
fragaria_vesca	FvH4_3g39510 FvH4_3g39510 FvH4_3g39510 FvH4_3g39510
malus_domestica	MD03G1060300.v1.1 MD11G1063400.v1.1
prunus_persica	Prupe.6G050700_v2.0.a1 Prupe.6G050700_v2.0.a1
pyrus_communis	pycom03g04840 pycom11g05310
rosa_chinensis	RchiOBHm_Chr5g0071281
rosa_laevigata	RLG00000036198
rosa_multiflora	Rmu_sc0006990.1_g000011
rosa_roxburghii	Rroxscaffold_1G00009860
rosa_rugosa	Rorug05G0411100 Rorug05G0411100 Rorug05G0411100 Rorug05G0411100
rosa_samantha	Rh5AG467300 Rh5BG485800 Rh5CG510200 Rh5DG497000
rosa_wichuraiana	Rw5G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AasI	GACNNNNNNGTC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	787
AccB1I	GGYRCC	3 cut(s)	32, 398, 854
AccB7I	CCANNNNNTGG	2 cut(s)	335, 800
AccII	CGCG	3 cut(s)	237, 264, 288
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	1025
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	3 cut(s)	14, 89, 697
AfiI	CCNNNNNNNGG	7 cut(s)	47, 329, 335, 692, 800, 815, 946
AgsI	TTSAA	1 cut(s)	346
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	2 cut(s)	328, 835
AluBI	AGCT	3 cut(s)	701, 944, 1048
AluI	AGCT	3 cut(s)	701, 944, 1048
AlwI	GGATC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	746
Ama87I	CYCGRG	1 cut(s)	858
AoxI	GGCC	2 cut(s)	283, 865
ApaI	GGGCCC	1 cut(s)	869
ApeKI	GCWGC	3 cut(s)	174, 926, 1045
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	5 cut(s)	776, 806, 833, 865, 866
AsuHPI	GGTGA	6 cut(s)	269, 422, 611, 839, 851, 961
AvaI	CYCGRG	1 cut(s)	858
AvaII	GGWCC	3 cut(s)	776, 806, 833
BaeGI	GKGCMC	3 cut(s)	323, 859, 869
BanI	GGYRCC	3 cut(s)	32, 398, 854
BanII	GRGCYC	1 cut(s)	869
BarI	GAAGNNNNNNTAC	2 cut(s)	913, 945
BbvI	GCAGC	3 cut(s)	186, 913, 1057
BciT130I	CCWGG	2 cut(s)	330, 837
BciVI	GTATCC	1 cut(s)	884
BfaI	CTAG	3 cut(s)	54, 729, 993
BfmI	CTRYAG	1 cut(s)	810
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	787
BfuI	GTATCC	1 cut(s)	884
BglI	GCCNNNNNGGC	1 cut(s)	291
Bme1390I	CCNGG	2 cut(s)	330, 837
Bme18I	GGWCC	3 cut(s)	776, 806, 833
BmeT110I	CYCGRG	1 cut(s)	858
BmgBI	CACGTC	1 cut(s)	203
BmgT120I	GGNCC	5 cut(s)	776, 806, 833, 865, 866
BmiI	GGNNCC	6 cut(s)	34, 400, 669, 856, 866, 867
BmrFI	CCNGG	2 cut(s)	330, 837
BmsI	GCATC	3 cut(s)	733, 791, 832
BpmI	CTGGAG	1 cut(s)	723
Bpu10I	CCTNAGC	1 cut(s)	945
Bsa29I	ATCGAT	1 cut(s)	1105
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	5 cut(s)	262, 286, 469, 637, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	7 cut(s)	47, 329, 335, 692, 800, 815, 946
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	460, 775
Bse3DI	GCAATG	1 cut(s)	994
BseBI	CCWGG	2 cut(s)	330, 837
BseCI	ATCGAT	1 cut(s)	1105
BseDI	CCNNGG	5 cut(s)	262, 286, 469, 637, 859
BseLI	CCNNNNNNNGG	7 cut(s)	47, 329, 335, 692, 800, 815, 946
BseMI	GCAATG	1 cut(s)	994
BseNI	ACTGG	2 cut(s)	460, 775
BseRI	GAGGAG	2 cut(s)	30, 462
BseSI	GKGCMC	3 cut(s)	323, 859, 869
BseXI	GCAGC	3 cut(s)	186, 913, 1057
BseYI	CCCAGC	1 cut(s)	940
Bsh1236I	CGCG	3 cut(s)	237, 264, 288
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	285, 867
BshNI	GGYRCC	3 cut(s)	32, 398, 854
BshVI	ATCGAT	1 cut(s)	1105
BsiEI	CGRYCG	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	1 cut(s)	405
BslI	CCNNNNNNNGG	7 cut(s)	47, 329, 335, 692, 800, 815, 946
BsnI	GGCC	2 cut(s)	285, 867
BsoBI	CYCGRG	1 cut(s)	858
Bsp120I	GGGCCC	1 cut(s)	865
Bsp1286I	GDGCHC	3 cut(s)	323, 859, 869
Bsp143I	GATC	4 cut(s)	50, 232, 412, 1102
BspANI	GGCC	2 cut(s)	285, 867
BspDI	ATCGAT	1 cut(s)	1105
BspFNI	CGCG	3 cut(s)	237, 264, 288
BspLI	GGNNCC	6 cut(s)	34, 400, 669, 856, 866, 867
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	787
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	3 cut(s)	32, 398, 854
BsrDI	GCAATG	1 cut(s)	994
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	460, 775
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	5 cut(s)	262, 286, 469, 637, 859
BssMI	GATC	4 cut(s)	50, 232, 412, 1102
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	637
Bst2UI	CCWGG	2 cut(s)	330, 837
Bst4CI	ACNGT	6 cut(s)	17, 470, 662, 687, 896, 1030
Bst6I	CTCTTC	3 cut(s)	295, 352, 637
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	814
BstDEI	CTNAG	1 cut(s)	945
BstDSI	CCRYGG	3 cut(s)	262, 286, 469
BstEII	GGTNACC	2 cut(s)	257, 464
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstFNI	CGCG	3 cut(s)	237, 264, 288
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	4 cut(s)	53, 235, 415, 1105
BstMBI	GATC	4 cut(s)	50, 232, 412, 1102
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	9 cut(s)	66, 75, 132, 156, 204, 243, 270, 291, 935
BstNI	CCWGG	2 cut(s)	330, 837
BstPI	GGTNACC	2 cut(s)	257, 464
BstSCI	CCNGG	2 cut(s)	328, 835
BstSFI	CTRYAG	1 cut(s)	810
BstSLI	GKGCMC	3 cut(s)	323, 859, 869
BstUI	CGCG	3 cut(s)	237, 264, 288
BstV1I	GCAGC	3 cut(s)	186, 913, 1057
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	1105
BsuI	GTATCC	1 cut(s)	884
BsuRI	GGCC	2 cut(s)	285, 867
BsuTUI	ATCGAT	1 cut(s)	1105
BtgI	CCRYGG	3 cut(s)	262, 286, 469
BtgZI	GCGATG	2 cut(s)	42, 192
BtrI	CACGTC	1 cut(s)	203
BtsI	GCAGTG	3 cut(s)	301, 427, 962
BtsIMutI	CAGTG	3 cut(s)	301, 427, 962
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	1 cut(s)	814
CaiI	CAGNNNCTG	1 cut(s)	746
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	5 cut(s)	776, 806, 833, 865, 866
Cfr42I	CCGCGG	2 cut(s)	265, 289
ClaI	ATCGAT	1 cut(s)	1105
Csp6I	GTAC	3 cut(s)	13, 88, 696
CviQI	GTAC	3 cut(s)	13, 88, 696
DdeI	CTNAG	1 cut(s)	945
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	4 cut(s)	52, 234, 414, 1104
DpnII	GATC	4 cut(s)	50, 232, 412, 1102
DrdI	GACNNNNNNGTC	1 cut(s)	207
DseDI	GACNNNNNNGTC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	3 cut(s)	295, 352, 637
EarI	CTCTTC	3 cut(s)	295, 352, 637
EciI	GGCGGA	2 cut(s)	213, 741
Eco130I	CCWWGG	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	869
Eco32I	GATATC	1 cut(s)	224
Eco47I	GGWCC	3 cut(s)	776, 806, 833
Eco57I	CTGAAG	1 cut(s)	1025
Eco88I	CYCGRG	1 cut(s)	858
Eco91I	GGTNACC	2 cut(s)	257, 464
EcoNI	CCTNNNNNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	2 cut(s)	865, 866
EcoO65I	GGTNACC	2 cut(s)	257, 464
EcoRII	CCWGG	2 cut(s)	328, 835
EcoRV	GATATC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	637
EcoT38I	GRGCYC	1 cut(s)	869
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	637
FauI	CCCGC	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	869
FspBI	CTAG	3 cut(s)	54, 729, 993
GlaI	GCGC	1 cut(s)	34
GsaI	CCCAGC	1 cut(s)	944
GsuI	CTGGAG	1 cut(s)	723
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	285, 867
HapII	CCGG	1 cut(s)	405
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	1033
HindII	GTYRAC	1 cut(s)	1033
HinfI	GANTC	2 cut(s)	996, 1077
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	6 cut(s)	269, 422, 611, 839, 851, 961
Hpy166II	GTNNAC	2 cut(s)	776, 1033
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	776, 1033
HpyAV	CCTTC	4 cut(s)	402, 536, 563, 596
HpyCH4III	ACNGT	6 cut(s)	17, 470, 662, 687, 896, 1030
HpyCH4IV	ACGT	2 cut(s)	202, 1090
HpyCH4V	TGCA	5 cut(s)	353, 680, 782, 812, 845
HpyF10VI	GCNNNNNNNGC	9 cut(s)	66, 75, 132, 156, 204, 243, 270, 291, 935
HpyF3I	CTNAG	1 cut(s)	945
HpySE526I	ACGT	2 cut(s)	202, 1090
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
KspI	CCGCGG	2 cut(s)	265, 289
Kzo9I	GATC	4 cut(s)	50, 232, 412, 1102
Lsp1109I	GCAGC	3 cut(s)	186, 913, 1057
LweI	GCATC	3 cut(s)	733, 791, 832
MaeI	CTAG	3 cut(s)	54, 729, 993
MaeII	ACGT	2 cut(s)	202, 1090
MaeIII	GTNAC	8 cut(s)	257, 368, 464, 485, 509, 533, 656, 1024
MalI	GATC	4 cut(s)	52, 234, 414, 1104
MboI	GATC	4 cut(s)	50, 232, 412, 1102
MboII	GAAGA	4 cut(s)	312, 369, 654, 1086
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	3 cut(s)	323, 859, 869
MluCI	AATT	4 cut(s)	340, 436, 709, 967
Mly113I	GGCGCC	1 cut(s)	33
MspA1I	CMGCKG	3 cut(s)	264, 288, 701
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	330, 837
MvaI	CCWGG	2 cut(s)	330, 837
MvnI	CGCG	3 cut(s)	237, 264, 288
MwoI	GCNNNNNNNGC	9 cut(s)	66, 75, 132, 156, 204, 243, 270, 291, 935
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	4 cut(s)	50, 232, 412, 1102
NlaIV	GGNNCC	6 cut(s)	34, 400, 669, 856, 866, 867
NmuCI	GTSAC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	996, 1077
PflMI	CCANNNNNTGG	2 cut(s)	335, 800
PluTI	GGCGCC	1 cut(s)	36
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	328, 835
PspEI	GGTNACC	2 cut(s)	257, 464
PspFI	CCCAGC	1 cut(s)	940
PspGI	CCWGG	2 cut(s)	328, 835
PspN4I	GGNNCC	6 cut(s)	34, 400, 669, 856, 866, 867
PspOMI	GGGCCC	1 cut(s)	865
PspPI	GGNCC	5 cut(s)	776, 806, 833, 865, 866
PsrI	GAACNNNNNNTAC	2 cut(s)	604, 636
PstI	CTGCAG	1 cut(s)	814
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	3 cut(s)	14, 89, 697
RsaNI	GTAC	3 cut(s)	13, 88, 696
SacII	CCGCGG	2 cut(s)	265, 289
Sau3AI	GATC	4 cut(s)	50, 232, 412, 1102
Sau96I	GGNCC	5 cut(s)	776, 806, 833, 865, 866
SbfI	CCTGCAGG	1 cut(s)	814
ScrFI	CCNGG	2 cut(s)	330, 837
SdaI	CCTGCAGG	1 cut(s)	814
SduI	GDGCHC	3 cut(s)	323, 859, 869
SfaNI	GCATC	3 cut(s)	733, 791, 832
SfcI	CTRYAG	1 cut(s)	810
SfoI	GGCGCC	1 cut(s)	34
Sfr303I	CCGCGG	2 cut(s)	265, 289
SgrAI	CRCCGGYG	1 cut(s)	404
SgrBI	CCGCGG	2 cut(s)	265, 289
SinI	GGWCC	3 cut(s)	776, 806, 833
Sse8387I	CCTGCAGG	1 cut(s)	814
Sse9I	AATT	4 cut(s)	340, 436, 709, 967
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	3 cut(s)	54, 729, 993
StyD4I	CCNGG	2 cut(s)	328, 835
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	6 cut(s)	17, 470, 662, 687, 896, 1030
TaiI	ACGT	2 cut(s)	205, 1093
TaqI	TCGA	4 cut(s)	211, 502, 526, 1105
TasI	AATT	4 cut(s)	340, 436, 709, 967
TauI	GCSGC	7 cut(s)	60, 63, 150, 249, 273, 288, 404
TfiI	GAWTC	2 cut(s)	996, 1077
TscAI	CASTG	3 cut(s)	301, 427, 962
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	174, 926, 1045
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	555, 603
TspGWI	ACGGA	3 cut(s)	63, 105, 947
TspRI	CASTG	3 cut(s)	301, 427, 962
Van91I	CCANNNNNTGG	2 cut(s)	335, 800
VpaK11BI	GGWCC	3 cut(s)	776, 806, 833
XagI	CCTNNNNNAGG	1 cut(s)	327
XapI	RAATTY	1 cut(s)	340
XspI	CTAG	3 cut(s)	54, 729, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.