Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007365

Physical Location & Seq

Genomic Coordinates Forward (+)

80271053 .. 80274808

Gene Structure 3756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG467300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATATTGAAATTGGTAATACTTGCATATAGCTGTGGGAATGTGAACTTTGCGAGAAGAACTGAGTGTAACAAGTGTGGTACGCCCTCTCCTGTGGGTGCTGGTGGCGGTGGGGGAGACCGTGGTGGTGGAGGTGGTTATAATAGAGGTGGAAGTGGTGGGGGATATGGTGATAACCGTGGTGGCAGAAGTGGTAATTATGATGGGGGTCGAAGTGGCAACTATGAAGGAGGTAAAGGTAGCAATTATGATGGAGGCAGAGGGGGTGGTTTTGATAGTAGAGGTGGAGGAGGTGGGAGTAGAGGTGGTTCATATGGTGGTAACCAAGGAAGAGATGATGGTGGGTACGGTCAGGCTCCTGTAGCTGCTCCTCCATCTTATGGTGCAGGTGGCAGTTACCCACCATCGTACAATGCTAATTATGGAACAGATGCAGTCCCTCCTCCTACAAGCTATACTGGTGGGCCTGCTTCATATCCCCCATCCTATGGTGGTCCTGCAGGTGGTTATGGTGGTGATGGTCCGGGTGATGCAAGGAGTGGCGGCCGAGGTGGCCCTCCTGCTAAATATGATGGCGGATATGGTGGTGGTGGTCGAGGTGGTTATGGAAGTGCTCCTACAGAGGCCCCTGCTAAGGTGAAGCAATGCGATGAGAACTGTGATGATACTTGTGACAATGCTAGAATCTACATTTCAAATCTGCCACCAGATGTCACGGTCGATGAACTGCAAGCTCTTTTTGGAGGCATTGGACAAGTAAATCCATATCTTCTTCCGAACTTTAGGAACCCTACAGATTTAAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

RRM_1 zf-RanBP

Protein Analysis

269

Amino Acids

26.52

Weight (kDa)

6.28

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58470 AT5G58470
fragaria_vesca	FvH4_3g39510 FvH4_3g39510 FvH4_3g39510 FvH4_3g39510
malus_domestica	MD03G1060300.v1.1 MD11G1063400.v1.1
prunus_persica	Prupe.6G050700_v2.0.a1 Prupe.6G050700_v2.0.a1
pyrus_communis	pycom03g04840 pycom11g05310
rosa_chinensis	RchiOBHm_Chr5g0071281
rosa_laevigata	RLG00000036198
rosa_multiflora	Rmu_sc0006990.1_g000011
rosa_roxburghii	Rroxscaffold_1G00009860
rosa_rugosa	Rorug05G0411100 Rorug05G0411100 Rorug05G0411100 Rorug05G0411100
rosa_samantha	Rh5AG467300 Rh5BG485800 Rh5CG510200 Rh5DG497000
rosa_wichuraiana	Rw5G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AarI	CACCTGC	2 cut(s)	377, 491
Acc36I	ACCTGC	2 cut(s)	377, 491
AccB7I	CCANNNNNTGG	2 cut(s)	380, 488
AciI	CCGC	3 cut(s)	108, 543, 576
AcoI	YGGCCR	1 cut(s)	544
AfaI	GTAC	3 cut(s)	82, 347, 410
AfiI	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
AgsI	TTSAA	2 cut(s)	10, 696
AluBI	AGCT	4 cut(s)	33, 365, 453, 734
AluI	AGCT	4 cut(s)	33, 365, 453, 734
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	111
AoxI	GGCC	4 cut(s)	464, 544, 553, 624
ApeKI	GCWGC	1 cut(s)	365
AspS9I	GGNCC	5 cut(s)	464, 494, 521, 554, 625
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	4 cut(s)	182, 527, 539, 649
AvaII	GGWCC	2 cut(s)	494, 521
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	8 cut(s)	197, 245, 332, 382, 412, 490, 512, 566
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	4 cut(s)	360, 498, 618, 792
BfuAI	ACCTGC	2 cut(s)	377, 491
BglI	GCCNNNNNGGC	1 cut(s)	552
BisI	GCNGC	2 cut(s)	366, 544
BlsI	GCNGC	2 cut(s)	367, 545
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	2 cut(s)	494, 521
BmgT120I	GGNCC	5 cut(s)	464, 494, 521, 554, 625
BmiI	GGNNCC	3 cut(s)	357, 627, 788
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	2 cut(s)	421, 520
Bpu10I	CCTNAGC	1 cut(s)	633
BpuMI	CCSGG	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	121, 178, 325, 547
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 289, 319
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
Bse1I	ACTGG	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	650
BseDI	CCNNGG	4 cut(s)	121, 178, 325, 547
BseGI	GGATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	3 cut(s)	303, 360, 432
BseX3I	CGGCCG	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	405
Bsh1285I	CGRYCG	2 cut(s)	547, 720
BshFI	GGCC	4 cut(s)	466, 546, 555, 626
BsiEI	CGRYCG	2 cut(s)	547, 720
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	4 cut(s)	466, 546, 555, 626
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	616
BspACI	CCGC	3 cut(s)	108, 543, 576
BspANI	GGCC	4 cut(s)	466, 546, 555, 626
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	357, 627, 788
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	2 cut(s)	377, 491
BspTNI	GGTCTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	4 cut(s)	121, 178, 325, 547
BssT1I	CCWWGG	1 cut(s)	325
Bst4CI	ACNGT	5 cut(s)	122, 179, 350, 659, 718
Bst6I	CTCTTC	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	468, 732
BstDEI	CTNAG	2 cut(s)	63, 633
BstDSI	CCRYGG	2 cut(s)	121, 178
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	482
BstMAI	GTCTC	1 cut(s)	111
BstMCI	CGRYCG	2 cut(s)	547, 720
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 552
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	4 cut(s)	360, 498, 618, 792
BstV1I	GCAGC	1 cut(s)	352
BstZI	CGGCCG	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	466, 546, 555, 626
BtgI	CCRYGG	2 cut(s)	121, 178
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	1 cut(s)	482
BveI	ACCTGC	2 cut(s)	377, 491
Cac8I	GCNNGC	2 cut(s)	468, 732
Cfr13I	GGNCC	5 cut(s)	464, 494, 521, 554, 625
Csp6I	GTAC	3 cut(s)	81, 346, 409
CviJI	RGCY	9 cut(s)	33, 356, 365, 453, 466, 546, 555, 626, 734
CviKI_1	RGCY	9 cut(s)	33, 356, 365, 453, 466, 546, 555, 626, 734
CviQI	GTAC	3 cut(s)	81, 346, 409
DdeI	CTNAG	2 cut(s)	63, 633
DraI	TTTAAA	1 cut(s)	801
EaeI	YGGCCR	1 cut(s)	544
EagI	CGGCCG	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	591
EclXI	CGGCCG	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	494, 521
Eco52I	CGGCCG	1 cut(s)	544
Eco91I	GGTNACC	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaqI	GGGAC	1 cut(s)	422
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	366, 544
FokI	GGATG	1 cut(s)	469
Fsp4HI	GCNGC	2 cut(s)	366, 544
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	2 cut(s)	366, 544
HaeIII	GGCC	4 cut(s)	466, 546, 555, 626
HapII	CCGG	1 cut(s)	524
HinfI	GANTC	1 cut(s)	684
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	4 cut(s)	182, 527, 539, 649
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	777
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	5 cut(s)	122, 179, 350, 659, 718
HpyCH4V	TGCA	6 cut(s)	26, 386, 434, 500, 533, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 552
HpyF3I	CTNAG	2 cut(s)	63, 633
LmnI	GCTCC	3 cut(s)	361, 373, 619
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	421, 520
MaeI	CTAG	1 cut(s)	681
MaeIII	GTNAC	5 cut(s)	68, 320, 395, 671, 712
MboII	GAAGA	4 cut(s)	69, 342, 761, 764
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	4 cut(s)	11, 196, 244, 418
MseI	TTAA	1 cut(s)	800
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	2 cut(s)	362, 552
NciI	CCSGG	1 cut(s)	525
NdeI	CATATG	1 cut(s)	313
NlaIV	GGNNCC	3 cut(s)	357, 627, 788
NmeAIII	GCCGAG	1 cut(s)	572
NmuCI	GTSAC	2 cut(s)	671, 712
PaqCI	CACCTGC	2 cut(s)	377, 491
PfeI	GAWTC	1 cut(s)	684
PflMI	CCANNNNNTGG	2 cut(s)	380, 488
PkrI	GCNGC	2 cut(s)	367, 545
PsiI	TTATAA	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	357, 627, 788
PspPI	GGNCC	5 cut(s)	464, 494, 521, 554, 625
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PstI	CTGCAG	1 cut(s)	502
RsaI	GTAC	3 cut(s)	82, 347, 410
RsaNI	GTAC	3 cut(s)	81, 346, 409
SaqAI	TTAA	1 cut(s)	800
SatI	GCNGC	2 cut(s)	366, 544
Sau96I	GGNCC	5 cut(s)	464, 494, 521, 554, 625
SbfI	CCTGCAGG	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	525
SdaI	CCTGCAGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	2 cut(s)	421, 520
SfcI	CTRYAG	4 cut(s)	360, 498, 618, 792
SfiI	GGCCNNNNNGGCC	1 cut(s)	552
SinI	GGWCC	2 cut(s)	494, 521
Sse8387I	CCTGCAGG	1 cut(s)	502
Sse9I	AATT	4 cut(s)	11, 196, 244, 418
SsiI	CCGC	3 cut(s)	108, 543, 576
SspMI	CTAG	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	5 cut(s)	122, 179, 350, 659, 718
TaqI	TCGA	3 cut(s)	211, 595, 720
TasI	AATT	4 cut(s)	11, 196, 244, 418
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	1 cut(s)	684
Tru1I	TTAA	1 cut(s)	800
Tru9I	TTAA	1 cut(s)	800
TseFI	GTSAC	2 cut(s)	671, 712
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	2 cut(s)	671, 712
TspDTI	ATGAA	4 cut(s)	240, 300, 462, 738
Van91I	CCANNNNNTGG	2 cut(s)	380, 488
VpaK11BI	GGWCC	2 cut(s)	494, 521
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.