Rmu_sc0006990.1_g000011

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006990.1
Physical Location & Seq
Reverse (-)
42300 .. 44761
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006990.1_g000011.1.cds

Sequence Viewer

Length: 1428 bp
atggctgggatgtatggtcaggagggcggtggtggtgccgctccgccgtatggatctagcggcggtggtggctacggtggctccggagggtatggaggcggttccggaggttatggaggaggcggtggcggtggaggctacggaggaggaggtggtggatatggaggtaaaggcggcgatagcggtggttacggtggtggaggccgtggtggtcgaggtggaggaggttatggtggcggtggcggtggcggtcgaggtggaggatatcaaggcgaccgtggtggcggccgcggaggtggtggcggcggcggcagaggtggccgtggtggcagtggaagggatggtgattggccttgccctaatccaggctgtgggaatgtgaactttgcgagaagaactgagtgtaacaagtgtggtacgccctctcctgcgggcgctggtggcggtgggggagaccgtggtggtggaggtggttataatagaggtggaagtggtgggggatatggtgataaccgtggtggcagaagtggtaattatgatgggggtcgaagtggcaactatgaaggaggtaaaggtagcaattatgatggaggcagagggggtggttttgatagtagaggtggaggaggtgggagtagaggtggttcttatggtggtaaccaaggaagagatgatggtgggtacggtcaggctcctgcagctgctcctccatcttatggtgcaggtggcagttacccaccatcgtacaatgctaattatggaacagatgcagtccctcctcctacaagctatactggtgggcctgcttcatatcccccatcctatggtggtcctgcaggtggttatggtggtgatggtccgggtgatgcaaggagtggcggccgaggtggccctcctgctaaatacgatggtggatatggtggtggtggtcgaggtggttatggaagtgctcctacagaggcccctgctaaggtgaagcaatgtgatgagaactgtgatgatacttgtgacaatgctagaatctacatttcaaatctgccacctgatgtcacggtcgatgaactgcaagctctttttggaggcattggacaagttgggagaatcaagcagaaacgtgggtacaaggatcagtggccatataacatcaaaatttacacagatgagtcgggaaagaacaaaggtgatgcatgtttagcctatgaagatccaaatgctgcacattcagctggcagtttttacaacggtcatgacataaggggctataagatcagtgttgcgatggcagagaggtcggcacctagggcttacgacaatggtggtggtagaggtggttatgggggcggtgggcgcagggacaattatcgagatggtggacctgaacaattcagaaaattctctctacgcgcggaagctctctccattctctag
Functional Annotation

Protein Analysis

475

Amino Acids

45.61

Weight (kDa)

8.87

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AarI CACCTGC 2 cut(s) 713, 827
Acc36I ACCTGC 2 cut(s) 713, 827
AccB1I GGYRCC 2 cut(s) 35, 1294
AccB7I CCANNNNNTGG 3 cut(s) 371, 716, 824
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 3 cut(s) 291, 1404, 1406
AccIII TCCGGA 2 cut(s) 83, 104
AclWI GGATC 3 cut(s) 61, 1134, 1199
AcoI YGGCCR 4 cut(s) 286, 319, 880, 1133
AcsI RAATTY 2 cut(s) 1149, 1391
AfaI GTAC 4 cut(s) 418, 683, 746, 1121
AfiI CCNNNNNNNGG 7 cut(s) 50, 365, 371, 716, 824, 839, 970
AgsI TTSAA 1 cut(s) 1032
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 5 cut(s) 701, 789, 1070, 1226, 1412
AluI AGCT 5 cut(s) 701, 789, 1070, 1226, 1412
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 3 cut(s) 61, 1134, 1199
Aor13HI TCCGGA 2 cut(s) 83, 104
AoxI GGCC 9 cut(s) 202, 286, 319, 350, 800, 880, 889, 960, 1133
ApeKI GCWGC 3 cut(s) 698, 701, 1214
ApoI RAATTY 2 cut(s) 1149, 1391
AspA2I CCTAGG 1 cut(s) 1298
AspLEI GCGC 3 cut(s) 437, 1350, 1406
AspS9I GGNCC 6 cut(s) 800, 830, 857, 890, 961, 1373
AsuC2I CCSGG 1 cut(s) 861
AsuHPI GGTGA 6 cut(s) 356, 518, 863, 875, 985, 1193
AvaII GGWCC 3 cut(s) 830, 857, 1373
AvrII CCTAGG 1 cut(s) 1298
BalI TGGCCA 1 cut(s) 1135
BanI GGYRCC 2 cut(s) 35, 1294
BarI GAAGNNNNNNTAC 2 cut(s) 937, 969
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 3 cut(s) 688, 710, 1201
BceAI ACGGC 3 cut(s) 31, 189, 306
BcgI CGANNNNNNTGC 2 cut(s) 1272, 1306
BciT130I CCWGG 1 cut(s) 366
BcnI CCSGG 1 cut(s) 861
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 4 cut(s) 57, 1017, 1299, 1426
BfmI CTRYAG 3 cut(s) 696, 834, 954
BfoI RGCGCY 1 cut(s) 438
BfuAI ACCTGC 2 cut(s) 713, 827
BglI GCCNNNNNGGC 2 cut(s) 327, 888
BlnI CCTAGG 1 cut(s) 1298
Bme1390I CCNGG 2 cut(s) 366, 861
Bme18I GGWCC 3 cut(s) 830, 857, 1373
BmgT120I GGNCC 6 cut(s) 800, 830, 857, 890, 961, 1373
BmiI GGNNCC 6 cut(s) 37, 82, 103, 693, 963, 1296
BmrFI CCNGG 2 cut(s) 366, 861
BmsI GCATC 3 cut(s) 757, 856, 1174
Bpu10I CCTNAGC 1 cut(s) 969
BpuMI CCSGG 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 447
BsaJI CCNNGG 9 cut(s) 205, 277, 289, 322, 457, 514, 661, 883, 1298
BsaWI WCCGGW 2 cut(s) 83, 104
BsaXI ACNNNNNCTCC 6 cut(s) 65, 95, 409, 439, 625, 655
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 365, 371, 716, 824, 839, 970
Bse1I ACTGG 1 cut(s) 799
Bse3DI GCAATG 1 cut(s) 986
BseAI TCCGGA 2 cut(s) 83, 104
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 9 cut(s) 205, 277, 289, 322, 457, 514, 661, 883, 1298
BseGI GGATG 3 cut(s) 15, 346, 818
BseLI CCNNNNNNNGG 7 cut(s) 50, 365, 371, 716, 824, 839, 970
BseMI GCAATG 1 cut(s) 986
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 799
BseRI GAGGAG 7 cut(s) 132, 159, 162, 237, 639, 696, 768
BseX3I CGGCCG 2 cut(s) 286, 880
BseXI GCAGC 3 cut(s) 688, 710, 1201
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 2 cut(s) 741, 1200
Bsh1236I CGCG 3 cut(s) 291, 1404, 1406
Bsh1285I CGRYCG 5 cut(s) 253, 277, 289, 883, 1056
BshFI GGCC 9 cut(s) 204, 288, 321, 352, 802, 882, 891, 962, 1135
BshNI GGYRCC 2 cut(s) 35, 1294
BsiEI CGRYCG 5 cut(s) 253, 277, 289, 883, 1056
BsiHKAI GWGCWC 1 cut(s) 952
BsiSI CCGG 3 cut(s) 84, 105, 860
BslFI GGGAC 2 cut(s) 758, 1367
BslI CCNNNNNNNGG 7 cut(s) 50, 365, 371, 716, 824, 839, 970
BsmAI GTCTC 1 cut(s) 447
BsmFI GGGAC 2 cut(s) 758, 1367
BsnI GGCC 9 cut(s) 204, 288, 321, 352, 802, 882, 891, 962, 1135
Bso31I GGTCTC 1 cut(s) 447
Bsp1286I GDGCHC 1 cut(s) 952
Bsp13I TCCGGA 2 cut(s) 83, 104
Bsp143I GATC 4 cut(s) 53, 1126, 1204, 1266
BspANI GGCC 9 cut(s) 204, 288, 321, 352, 802, 882, 891, 962, 1135
BspCNI CTCAG 1 cut(s) 391
BspEI TCCGGA 2 cut(s) 83, 104
BspFNI CGCG 3 cut(s) 291, 1404, 1406
BspHI TCATGA 1 cut(s) 1246
BspLI GGNNCC 6 cut(s) 37, 82, 103, 693, 963, 1296
BspMAI CTGCAG 2 cut(s) 700, 838
BspMI ACCTGC 2 cut(s) 713, 827
BspPI GGATC 3 cut(s) 61, 1134, 1199
BspT107I GGYRCC 2 cut(s) 35, 1294
BspTNI GGTCTC 1 cut(s) 447
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 986
BsrI ACTGG 1 cut(s) 799
BssECI CCNNGG 9 cut(s) 205, 277, 289, 322, 457, 514, 661, 883, 1298
BssMI GATC 4 cut(s) 53, 1126, 1204, 1266
BssT1I CCWWGG 2 cut(s) 661, 1298
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 9 cut(s) 77, 194, 278, 458, 515, 686, 995, 1054, 1244
Bst6I CTCTTC 1 cut(s) 661
BstC8I GCNNGC 4 cut(s) 433, 804, 1068, 1228
BstDEI CTNAG 2 cut(s) 399, 969
BstDSI CCRYGG 6 cut(s) 205, 277, 289, 322, 457, 514
BstEII GGTNACC 1 cut(s) 656
BstENI CCTNNNNNAGG 1 cut(s) 363
BstF5I GGATG 3 cut(s) 15, 346, 818
BstFNI CGCG 3 cut(s) 291, 1404, 1406
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 3 cut(s) 437, 1350, 1406
BstKTI GATC 4 cut(s) 56, 1129, 1207, 1269
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 4 cut(s) 53, 1126, 1204, 1266
BstMCI CGRYCG 5 cut(s) 253, 277, 289, 883, 1056
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 1191
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 2 cut(s) 364, 859
BstSFI CTRYAG 3 cut(s) 696, 834, 954
BstUI CGCG 3 cut(s) 291, 1404, 1406
BstV1I GCAGC 3 cut(s) 688, 710, 1201
BstX2I RGATCY 2 cut(s) 53, 1204
BstYI RGATCY 2 cut(s) 53, 1204
BstZI CGGCCG 2 cut(s) 286, 880
BsuRI GGCC 9 cut(s) 204, 288, 321, 352, 802, 882, 891, 962, 1135
BtgI CCRYGG 6 cut(s) 205, 277, 289, 322, 457, 514
BtgZI GCGATG 1 cut(s) 1292
BtsCI GGATG 3 cut(s) 15, 346, 818
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 3 cut(s) 337, 1136, 1276
BveI ACCTGC 2 cut(s) 713, 827
Cac8I GCNNGC 4 cut(s) 433, 804, 1068, 1228
CciI TCATGA 1 cut(s) 1246
CciNI GCGGCCGC 1 cut(s) 286
CfoI GCGC 3 cut(s) 437, 1350, 1406
Cfr13I GGNCC 6 cut(s) 800, 830, 857, 890, 961, 1373
Cfr42I CCGCGG 1 cut(s) 292
Csp6I GTAC 4 cut(s) 417, 682, 745, 1120
CspCI CAANNNNNGTGG 2 cut(s) 1300, 1335
CviAII CATG 2 cut(s) 1188, 1247
CviQI GTAC 4 cut(s) 417, 682, 745, 1120
DdeI CTNAG 2 cut(s) 399, 969
DpnI GATC 4 cut(s) 55, 1128, 1206, 1268
DpnII GATC 4 cut(s) 53, 1126, 1204, 1266
EaeI YGGCCR 4 cut(s) 286, 319, 880, 1133
EagI CGGCCG 2 cut(s) 286, 880
Eam1104I CTCTTC 1 cut(s) 661
EarI CTCTTC 1 cut(s) 661
EciI GGCGGA 1 cut(s) 33
EclXI CGGCCG 2 cut(s) 286, 880
Eco130I CCWWGG 2 cut(s) 661, 1298
Eco31I GGTCTC 1 cut(s) 447
Eco32I GATATC 1 cut(s) 266
Eco47I GGWCC 3 cut(s) 830, 857, 1373
Eco52I CGGCCG 2 cut(s) 286, 880
Eco91I GGTNACC 1 cut(s) 656
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 961
EcoO65I GGTNACC 1 cut(s) 656
EcoRII CCWGG 1 cut(s) 364
EcoRV GATATC 1 cut(s) 266
EcoT14I CCWWGG 2 cut(s) 661, 1298
EcoT22I ATGCAT 1 cut(s) 1189
ErhI CCWWGG 2 cut(s) 661, 1298
FaeI CATG 2 cut(s) 1191, 1250
FaqI GGGAC 2 cut(s) 758, 1367
FatI CATG 2 cut(s) 1187, 1246
FauI CCCGC 1 cut(s) 424
FokI GGATG 3 cut(s) 22, 353, 805
FspBI CTAG 4 cut(s) 57, 1017, 1299, 1426
GlaI GCGC 3 cut(s) 436, 1349, 1405
GsaI CCCAGC 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 9 cut(s) 204, 288, 321, 352, 802, 882, 891, 962, 1135
HapII CCGG 3 cut(s) 84, 105, 860
HhaI GCGC 3 cut(s) 437, 1350, 1406
Hin1II CATG 2 cut(s) 1191, 1250
Hin6I GCGC 3 cut(s) 435, 1348, 1404
HinP1I GCGC 3 cut(s) 435, 1348, 1404
HinfI GANTC 3 cut(s) 1020, 1101, 1163
HpaII CCGG 3 cut(s) 84, 105, 860
HphI GGTGA 6 cut(s) 356, 518, 863, 875, 985, 1193
Hpy166II GTNNAC 2 cut(s) 382, 1373
Hpy188I TCNGA 1 cut(s) 1388
Hpy188III TCNNGA 6 cut(s) 20, 84, 105, 1167, 1247, 1364
Hpy8I GTNNAC 2 cut(s) 382, 1373
HpyAV CCTTC 2 cut(s) 330, 557
HpyCH4III ACNGT 9 cut(s) 77, 194, 278, 458, 515, 686, 995, 1054, 1244
HpyCH4IV ACGT 1 cut(s) 1114
HpyCH4V TGCA 8 cut(s) 698, 722, 770, 836, 869, 1066, 1187, 1217
HpyF3I CTNAG 2 cut(s) 399, 969
HpySE526I ACGT 1 cut(s) 1114
Hsp92II CATG 2 cut(s) 1191, 1250
HspAI GCGC 3 cut(s) 435, 1348, 1404
Kpn2I TCCGGA 2 cut(s) 83, 104
KspI CCGCGG 1 cut(s) 292
Kzo9I GATC 4 cut(s) 53, 1126, 1204, 1266
LmnI GCTCC 5 cut(s) 46, 86, 697, 709, 955
Lsp1109I GCAGC 3 cut(s) 688, 710, 1201
LweI GCATC 3 cut(s) 757, 856, 1174
MaeI CTAG 4 cut(s) 57, 1017, 1299, 1426
MaeII ACGT 1 cut(s) 1114
MaeIII GTNAC 6 cut(s) 188, 404, 656, 731, 1007, 1048
MalI GATC 4 cut(s) 55, 1128, 1206, 1268
MbiI CCGCTC 1 cut(s) 41
MboI GATC 4 cut(s) 53, 1126, 1204, 1266
MboII GAAGA 3 cut(s) 405, 678, 1214
MflI RGATCY 2 cut(s) 53, 1204
MhlI GDGCHC 1 cut(s) 952
MlsI TGGCCA 1 cut(s) 1135
MluCI AATT 7 cut(s) 532, 580, 754, 1149, 1357, 1382, 1391
MluNI TGGCCA 1 cut(s) 1135
MlyI GAGTC 1 cut(s) 1172
Mox20I TGGCCA 1 cut(s) 1135
Mph1103I ATGCAT 1 cut(s) 1189
MroI TCCGGA 2 cut(s) 83, 104
MscI TGGCCA 1 cut(s) 1135
Msp20I TGGCCA 1 cut(s) 1135
MspA1I CMGCKG 3 cut(s) 291, 701, 1226
MspI CCGG 3 cut(s) 84, 105, 860
MspR9I CCNGG 2 cut(s) 366, 861
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 3 cut(s) 291, 1404, 1406
NciI CCSGG 1 cut(s) 861
NdeII GATC 4 cut(s) 53, 1126, 1204, 1266
NlaIII CATG 2 cut(s) 1191, 1250
NlaIV GGNNCC 6 cut(s) 37, 82, 103, 693, 963, 1296
NmeAIII GCCGAG 1 cut(s) 908
NmuCI GTSAC 2 cut(s) 1007, 1048
NotI GCGGCCGC 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 1189
NspI RCATGY 1 cut(s) 1191
PagI TCATGA 1 cut(s) 1246
PaqCI CACCTGC 2 cut(s) 713, 827
PfeI GAWTC 2 cut(s) 1020, 1101
PflMI CCANNNNNTGG 3 cut(s) 371, 716, 824
PleI GAGTC 1 cut(s) 1171
PpsI GAGTC 1 cut(s) 1171
PsiI TTATAA 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 364
PspEI GGTNACC 1 cut(s) 656
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 6 cut(s) 37, 82, 103, 693, 963, 1296
PspPI GGNCC 6 cut(s) 800, 830, 857, 890, 961, 1373
PsrI GAACNNNNNNTAC 2 cut(s) 628, 660
PstI CTGCAG 2 cut(s) 700, 838
PsuI RGATCY 2 cut(s) 53, 1204
PvuII CAGCTG 2 cut(s) 701, 1226
RsaI GTAC 4 cut(s) 418, 683, 746, 1121
RsaNI GTAC 4 cut(s) 417, 682, 745, 1120
SacII CCGCGG 1 cut(s) 292
Sau3AI GATC 4 cut(s) 53, 1126, 1204, 1266
Sau96I GGNCC 6 cut(s) 800, 830, 857, 890, 961, 1373
SbfI CCTGCAGG 1 cut(s) 838
SchI GAGTC 1 cut(s) 1172
ScrFI CCNGG 2 cut(s) 366, 861
SdaI CCTGCAGG 1 cut(s) 838
SduI GDGCHC 1 cut(s) 952
SfaNI GCATC 3 cut(s) 757, 856, 1174
SfcI CTRYAG 3 cut(s) 696, 834, 954
SfiI GGCCNNNNNGGCC 1 cut(s) 888
Sfr303I CCGCGG 1 cut(s) 292
SgrBI CCGCGG 1 cut(s) 292
SinI GGWCC 3 cut(s) 830, 857, 1373
Sse8387I CCTGCAGG 1 cut(s) 838
Sse9I AATT 7 cut(s) 532, 580, 754, 1149, 1357, 1382, 1391
SspMI CTAG 4 cut(s) 57, 1017, 1299, 1426
StyD4I CCNGG 2 cut(s) 364, 859
StyI CCWWGG 2 cut(s) 661, 1298
TaaI ACNGT 9 cut(s) 77, 194, 278, 458, 515, 686, 995, 1054, 1244
TaiI ACGT 1 cut(s) 1117
TaqI TCGA 6 cut(s) 214, 253, 547, 931, 1056, 1363
TasI AATT 7 cut(s) 532, 580, 754, 1149, 1357, 1382, 1391
TauI GCSGC 9 cut(s) 41, 63, 177, 288, 291, 306, 309, 312, 882
TfiI GAWTC 2 cut(s) 1020, 1101
TscAI CASTG 3 cut(s) 337, 1136, 1276
TseFI GTSAC 2 cut(s) 1007, 1048
TseI GCWGC 3 cut(s) 698, 701, 1214
Tsp45I GTSAC 2 cut(s) 1007, 1048
TspDTI ATGAA 4 cut(s) 576, 798, 1074, 1215
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 337, 1136, 1276
Van91I CCANNNNNTGG 3 cut(s) 371, 716, 824
VpaK11BI GGWCC 3 cut(s) 830, 857, 1373
XagI CCTNNNNNAGG 1 cut(s) 363
XapI RAATTY 2 cut(s) 1149, 1391
XceI RCATGY 1 cut(s) 1191
XmaJI CCTAGG 1 cut(s) 1298
XspI CTAG 4 cut(s) 57, 1017, 1299, 1426
Zsp2I ATGCAT 1 cut(s) 1189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.