Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007365

Physical Location & Seq

Genomic Coordinates Forward (+)

56784109 .. 56789670

Gene Structure 5562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0411100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGATGCACCAAATCAATGGACTTGGACTTTAAACTTCAGGATGTATACAGGTGCTTTCAGAACCATTCTGCAGGATGCAACAAGGTCATGGGTAACTCCATCCTCGGATGCGCATCCTCAAGATACTTGGACTCTTGAAGTCTGGATAAAATGTATTAGAAAATTATCTACAGAGTACTACTATCAGTTTGGTAACTATAACTCTGGGAACCCGTTGACCATCAACCAAATGCTGAATGAGTTTCAAACTGGGCAGGAAAAGGGAGATCATGGAGACCACCTTTTAAATGCAGTGTGTGTATCTGTGTCTGTGTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

RRM_1 zf-RanBP

Protein Analysis

107

Amino Acids

12.37

Weight (kDa)

5.19

Isoelectric Point (pI)

15.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58470 AT5G58470
fragaria_vesca	FvH4_3g39510 FvH4_3g39510 FvH4_3g39510 FvH4_3g39510
malus_domestica	MD03G1060300.v1.1 MD11G1063400.v1.1
prunus_persica	Prupe.6G050700_v2.0.a1 Prupe.6G050700_v2.0.a1
pyrus_communis	pycom03g04840 pycom11g05310
rosa_chinensis	RchiOBHm_Chr5g0071281
rosa_laevigata	RLG00000036198
rosa_multiflora	Rmu_sc0006990.1_g000011
rosa_roxburghii	Rroxscaffold_1G00009860
rosa_rugosa	Rorug05G0411100 Rorug05G0411100 Rorug05G0411100 Rorug05G0411100
rosa_samantha	Rh5AG467300 Rh5BG485800 Rh5CG510200 Rh5DG497000
rosa_wichuraiana	Rw5G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	140, 248
Alw26I	GTCTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	115
BccI	CCATC	2 cut(s)	109, 230
BcoDI	GTCTC	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	71, 171
BmcAI	AGTACT	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	3 cut(s)	67, 100, 124
BmuI	ACTGGG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	6 cut(s)	10, 48, 82, 101, 115, 115
BseJI	GATNNNNATC	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	268
BssNAI	GTATAC	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	6 cut(s)	10, 48, 82, 101, 115, 115
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	268
BstSFI	CTRYAG	2 cut(s)	71, 171
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstZ17I	GTATAC	1 cut(s)	48
BtsCI	GGATG	6 cut(s)	10, 48, 82, 101, 115, 115
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
CfoI	GCGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	90, 272
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DraI	TTTAAA	2 cut(s)	33, 288
Eco31I	GGTCTC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	22
FaeI	CATG	2 cut(s)	93, 275
FaiI	YATR	4 cut(s)	48, 91, 201, 273
FatI	CATG	2 cut(s)	89, 271
FblI	GTMKAC	1 cut(s)	47
FokI	GGATG	6 cut(s)	17, 55, 88, 89, 102, 122
FspAI	RTGCGCAY	1 cut(s)	114
FspI	TGCGCA	1 cut(s)	114
GlaI	GCGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	93, 275
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	48, 219
Hpy188I	TCNGA	3 cut(s)	62, 109, 319
Hpy188III	TCNNGA	4 cut(s)	40, 122, 137, 145
Hpy8I	GTNNAC	2 cut(s)	48, 219
HpyCH4V	TGCA	4 cut(s)	8, 73, 80, 293
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	93, 275
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	7 cut(s)	25, 36, 59, 130, 192, 237, 242
LweI	GCATC	3 cut(s)	67, 100, 124
MaeIII	GTNAC	2 cut(s)	94, 194
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MluCI	AATT	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	115, 129
MseI	TTAA	2 cut(s)	32, 287
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	93, 275
NlaIV	GGNNCC	1 cut(s)	212
NsbI	TGCGCA	1 cut(s)	114
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	75
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	32, 287
Sau3AI	GATC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	127
SetI	ASST	3 cut(s)	55, 89, 285
SfaNI	GCATC	3 cut(s)	67, 100, 124
SfcI	CTRYAG	2 cut(s)	71, 171
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	164
TasI	AATT	1 cut(s)	164
TatI	WGTACW	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	32, 287
Tru9I	TTAA	2 cut(s)	32, 287
TscAI	CASTG	1 cut(s)	300
TspRI	CASTG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.