Prupe.6G050700_v2.0.a1

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
3560963 .. 3565103
4141 bp
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UTR
Exon/CDS
Intron
Prupe.6G050700.1

Sequence Viewer

Length: 1422 bp
ATGGCTGGGATGTACGGTCAAGAGGGTGGTGATGGCGCCCCTCCGCCATATGGATCTAGCGGCAGTGGTGGCTATGGTGGCTCTGGAGGCTACGGAAGCGGTGGTGGAGGCTATGGAGGTGGTGGTGGAGGTGGAGGATATGGAGGAGGTAGTGGTGGTGGTTATGGAGGTAAGGGCGGCGATGGAGGTGGTTACGGCGGTGGAGGCCGTGGTGGACGAGGTGGTGGAGGTTATGGCGGCGGTGGTGGTCGAGGCGGAGGATATCAAGGAGGAGATCGCGGTGGCCGAGGTGCCGACCGTGGTGGTGGTGGCAGAGGTGGCCGCGGTGGCAGCGGAAGAGATGGTGATTGGCTTTGCCCTAACCCAGGCTGTGGGAATTTGAACTTTGCAAGAAGAGTTGAGTGTAACAAGTGTGGAACGCCCTCTCCTGCGGGTGGCGGTGGTGATCGTGGCGGCGGCAGTGGTGGCGGCGGTTATAATAGGGGAGGAAGTGGTGGGGGCTATGGTGGTAACCGTGGTGGTAGAGGTGGTAATTATGACGGGGGACGAAGTAGTAACTTTGAAGGAGGTAAAAGTAGCAGTTATGATGGAGGCAGAGGGGGTAATTTTGATGGTAGAGGTGGAGGTGGTAGTAGAGGTGGTTCTTATGGCAGTAACCAAGGAAGAGATGATGGTGGGTACGGTCAGGTTCCTCCACATGCGCCGCCGTCCTATGGTGCAGCTGGAGGCAATTACCCACCATCTTACAATGCTAGTTATGGAACAGATGCAGTTCCTCCTCCTACAAGCTATACTGGTGGGCCTACATCATATCCCCCATCCTATGGTGGTCCTGCAGGTGGTTATGCTGGTGATGGTCCGGGTGATGCAAGGAGTGGTGGCCGAGGTGGCCCTCCTGCTAAATATGATGGTGGTTATGGTGCCGGTGGTCGAGGTGGATATGGTGGTGCTGCTACGGAAGCCCCAGCTAAGGTGAAGCAATGCGACCAGAATTGTGATGAAACTTGTGACAATGCTAGAATCTACATATCAAACTTGCCACCAGATGTTACTGTTGACGAACTGCAGCAGCTTTTTGGAGGCATTGGACAAGTGGGAAGAATCAAGCAAAAACGTGGCTATAAAGACCAATGGCCATACAATATCAAAATATACACAGATGAATCGGGAAAAAACAAAGGCGATGCATGTTTAGCATATGAAGATCCGTCTGCTGCACATTCAGCTGGTGGATTTTACAATGATTACGAGTTAAGGGGCTATAAGATCAATGTTGCGATGGCAGAGAGGTCGGCACCTAGGGCTCCGCTTGACCAGGGCGGTGGTAGAGGTGGATATGGGGGCGGTGGGCGCAGGGATAATTATAGAGATGGTGGACCTGATAGACATCAACATGGCGGAAACCGTGCACGTCCTTATTGA
Functional Annotation

Protein Analysis

474

Amino Acids

45.91

Weight (kDa)

8.95

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AarI CACCTGC 1 cut(s) 827
Acc36I ACCTGC 1 cut(s) 827
AccB1I GGYRCC 4 cut(s) 35, 290, 920, 1294
AccB7I CCANNNNNTGG 2 cut(s) 371, 824
AccII CGCG 2 cut(s) 279, 324
AclWI GGATC 2 cut(s) 61, 1199
AcoI YGGCCR 4 cut(s) 283, 319, 880, 1133
AcsI RAATTY 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 2 cut(s) 14, 680
AfiI CCNNNNNNNGG 8 cut(s) 50, 365, 371, 434, 713, 824, 839, 970
AgsI TTSAA 2 cut(s) 382, 563
AjiI CACGTC 1 cut(s) 1412
AjnI CCWGG 2 cut(s) 364, 1314
AloI GAACNNNNNNTCC 2 cut(s) 409, 441
AluBI AGCT 5 cut(s) 722, 789, 968, 1072, 1226
AluI AGCT 5 cut(s) 722, 789, 968, 1072, 1226
Alw21I GWGCWC 1 cut(s) 1411
Alw44I GTGCAC 1 cut(s) 1407
AlwI GGATC 2 cut(s) 61, 1199
AoxI GGCC 7 cut(s) 205, 283, 319, 800, 880, 889, 1133
ApaLI GTGCAC 1 cut(s) 1407
ApeKI GCWGC 6 cut(s) 330, 719, 950, 1066, 1069, 1214
ApoI RAATTY 1 cut(s) 376
AspA2I CCTAGG 1 cut(s) 1298
AspLEI GCGC 3 cut(s) 38, 703, 1353
AspS9I GGNCC 5 cut(s) 800, 830, 857, 890, 1376
AsuC2I CCSGG 1 cut(s) 861
AsuHPI GGTGA 6 cut(s) 41, 356, 455, 863, 875, 985
AvaII GGWCC 3 cut(s) 830, 857, 1376
AvrII CCTAGG 1 cut(s) 1298
BaeGI GKGCMC 1 cut(s) 1411
BalI TGGCCA 1 cut(s) 1135
BanI GGYRCC 4 cut(s) 35, 290, 920, 1294
BanII GRGCYC 1 cut(s) 1306
Bbv12I GWGCWC 1 cut(s) 1411
BbvI GCAGC 6 cut(s) 342, 731, 937, 1078, 1081, 1201
BceAI ACGGC 3 cut(s) 192, 211, 691
BcgI CGANNNNNNTGC 2 cut(s) 1272, 1306
BciT130I CCWGG 2 cut(s) 366, 1316
BcnI CCSGG 1 cut(s) 861
BfaI CTAG 4 cut(s) 57, 753, 1017, 1299
BfmI CTRYAG 2 cut(s) 834, 1064
BfoI RGCGCY 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 827
BglI GCCNNNNNGGC 2 cut(s) 327, 888
BlnI CCTAGG 1 cut(s) 1298
Bme1390I CCNGG 3 cut(s) 366, 861, 1316
Bme18I GGWCC 3 cut(s) 830, 857, 1376
BmgBI CACGTC 1 cut(s) 1412
BmgT120I GGNCC 5 cut(s) 800, 830, 857, 890, 1376
BmiI GGNNCC 6 cut(s) 37, 292, 690, 922, 1296, 1305
BmrFI CCNGG 3 cut(s) 366, 861, 1316
BmsI GCATC 3 cut(s) 757, 856, 1174
BpmI CTGGAG 2 cut(s) 105, 744
Bpu10I CCTNAGC 1 cut(s) 969
BpuMI CCSGG 1 cut(s) 861
BsaBI GATNNNNATC 1 cut(s) 1386
BsaHI GRCGYC 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 8 cut(s) 50, 365, 371, 434, 713, 824, 839, 970
Bse118I RCCGGY 1 cut(s) 923
Bse1I ACTGG 1 cut(s) 799
Bse3DI GCAATG 1 cut(s) 986
Bse8I GATNNNNATC 1 cut(s) 1386
BseBI CCWGG 2 cut(s) 366, 1316
BseGI GGATG 2 cut(s) 15, 818
BseJI GATNNNNATC 1 cut(s) 1386
BseLI CCNNNNNNNGG 8 cut(s) 50, 365, 371, 434, 713, 824, 839, 970
BseMI GCAATG 1 cut(s) 986
BseNI ACTGG 1 cut(s) 799
BseRI GAGGAG 3 cut(s) 159, 285, 768
BseSI GKGCMC 1 cut(s) 1411
BseXI GCAGC 6 cut(s) 342, 731, 937, 1078, 1081, 1201
BseYI CCCAGC 2 cut(s) 5, 964
BsgI GTGCAG 2 cut(s) 738, 1200
Bsh1236I CGCG 2 cut(s) 279, 324
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 7 cut(s) 207, 285, 321, 802, 882, 891, 1135
BshNI GGYRCC 4 cut(s) 35, 290, 920, 1294
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 1411
BsiSI CCGG 2 cut(s) 860, 924
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 8 cut(s) 50, 365, 371, 434, 713, 824, 839, 970
BsmFI GGGAC 1 cut(s) 558
BsnI GGCC 7 cut(s) 207, 285, 321, 802, 882, 891, 1135
Bsp1286I GDGCHC 2 cut(s) 1306, 1411
Bsp143I GATC 5 cut(s) 53, 274, 445, 1204, 1266
BspANI GGCC 7 cut(s) 207, 285, 321, 802, 882, 891, 1135
BspFNI CGCG 2 cut(s) 279, 324
BspLI GGNNCC 6 cut(s) 37, 292, 690, 922, 1296, 1305
BspMAI CTGCAG 2 cut(s) 838, 1068
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 2 cut(s) 61, 1199
BspT107I GGYRCC 4 cut(s) 35, 290, 920, 1294
BsrDI GCAATG 1 cut(s) 986
BsrFI RCCGGY 1 cut(s) 923
BsrI ACTGG 1 cut(s) 799
BssAI RCCGGY 1 cut(s) 923
BssMI GATC 5 cut(s) 53, 274, 445, 1204, 1266
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 2 cut(s) 658, 1298
Bst2UI CCWGG 2 cut(s) 366, 1316
Bst4CI ACNGT 6 cut(s) 17, 299, 515, 683, 1054, 1406
Bst6I CTCTTC 3 cut(s) 331, 388, 658
BstACI GRCGYC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 969
BstDSI CCRYGG 4 cut(s) 208, 298, 322, 514
BstEII GGTNACC 1 cut(s) 509
BstENI CCTNNNNNAGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 15, 818
BstFNI CGCG 2 cut(s) 279, 324
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 3 cut(s) 38, 703, 1353
BstKTI GATC 5 cut(s) 56, 277, 448, 1207, 1269
BstMBI GATC 5 cut(s) 53, 274, 445, 1204, 1266
BstMCI CGRYCG 1 cut(s) 298
BstNI CCWGG 2 cut(s) 366, 1316
BstNSI RCATGY 2 cut(s) 701, 1191
BstPI GGTNACC 1 cut(s) 509
BstSCI CCNGG 3 cut(s) 364, 859, 1314
BstSFI CTRYAG 2 cut(s) 834, 1064
BstSLI GKGCMC 1 cut(s) 1411
BstUI CGCG 2 cut(s) 279, 324
BstV1I GCAGC 6 cut(s) 342, 731, 937, 1078, 1081, 1201
BstX2I RGATCY 2 cut(s) 53, 1204
BstXI CCANNNNNNTGG 1 cut(s) 1322
BstYI RGATCY 2 cut(s) 53, 1204
BsuRI GGCC 7 cut(s) 207, 285, 321, 802, 882, 891, 1135
BtgI CCRYGG 4 cut(s) 208, 298, 322, 514
BtgZI GCGATG 3 cut(s) 195, 1197, 1292
BtrI CACGTC 1 cut(s) 1412
BtsCI GGATG 2 cut(s) 15, 818
BtsI GCAGTG 2 cut(s) 70, 466
BtsIMutI CAGTG 2 cut(s) 70, 466
BveI ACCTGC 1 cut(s) 827
CfoI GCGC 3 cut(s) 38, 703, 1353
Cfr10I RCCGGY 1 cut(s) 923
Cfr13I GGNCC 5 cut(s) 800, 830, 857, 890, 1376
Cfr42I CCGCGG 1 cut(s) 325
Csp6I GTAC 2 cut(s) 13, 679
CviAII CATG 3 cut(s) 698, 1188, 1394
CviQI GTAC 2 cut(s) 13, 679
DdeI CTNAG 1 cut(s) 969
DinI GGCGCC 1 cut(s) 37
DpnI GATC 5 cut(s) 55, 276, 447, 1206, 1268
DpnII GATC 5 cut(s) 53, 274, 445, 1204, 1266
EaeI YGGCCR 4 cut(s) 283, 319, 880, 1133
Eam1104I CTCTTC 3 cut(s) 331, 388, 658
EarI CTCTTC 3 cut(s) 331, 388, 658
EciI GGCGGA 3 cut(s) 33, 270, 1413
Eco130I CCWWGG 2 cut(s) 658, 1298
Eco24I GRGCYC 1 cut(s) 1306
Eco32I GATATC 1 cut(s) 263
Eco47I GGWCC 3 cut(s) 830, 857, 1376
Eco91I GGTNACC 1 cut(s) 509
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoO65I GGTNACC 1 cut(s) 509
EcoRII CCWGG 2 cut(s) 364, 1314
EcoRV GATATC 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 658, 1298
EcoT22I ATGCAT 1 cut(s) 1189
EcoT38I GRGCYC 1 cut(s) 1306
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
ErhI CCWWGG 2 cut(s) 658, 1298
FaeI CATG 3 cut(s) 701, 1191, 1397
FaqI GGGAC 1 cut(s) 558
FatI CATG 3 cut(s) 697, 1187, 1393
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 2 cut(s) 49, 1198
FokI GGATG 2 cut(s) 22, 805
FriOI GRGCYC 1 cut(s) 1306
FspBI CTAG 4 cut(s) 57, 753, 1017, 1299
GlaI GCGC 3 cut(s) 37, 702, 1352
GsaI CCCAGC 2 cut(s) 9, 968
GsuI CTGGAG 2 cut(s) 105, 744
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 7 cut(s) 207, 285, 321, 802, 882, 891, 1135
HapII CCGG 2 cut(s) 860, 924
HhaI GCGC 3 cut(s) 38, 703, 1353
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 3 cut(s) 701, 1191, 1397
Hin6I GCGC 3 cut(s) 36, 701, 1351
HinP1I GCGC 3 cut(s) 36, 701, 1351
HincII GTYRAC 1 cut(s) 1057
HindII GTYRAC 1 cut(s) 1057
HinfI GANTC 3 cut(s) 1020, 1101, 1163
HpaII CCGG 2 cut(s) 860, 924
HphI GGTGA 6 cut(s) 41, 356, 455, 863, 875, 985
Hpy166II GTNNAC 4 cut(s) 215, 1057, 1376, 1409
Hpy188III TCNNGA 3 cut(s) 20, 84, 1167
Hpy8I GTNNAC 4 cut(s) 215, 1057, 1376, 1409
HpyAV CCTTC 1 cut(s) 557
HpyCH4III ACNGT 6 cut(s) 17, 299, 515, 683, 1054, 1406
HpyCH4IV ACGT 2 cut(s) 1114, 1411
HpyCH4V TGCA 9 cut(s) 389, 719, 770, 836, 869, 1066, 1187, 1217, 1409
HpyF3I CTNAG 1 cut(s) 969
HpySE526I ACGT 2 cut(s) 1114, 1411
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 3 cut(s) 701, 1191, 1397
HspAI GCGC 3 cut(s) 36, 701, 1351
KasI GGCGCC 1 cut(s) 35
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 5 cut(s) 53, 274, 445, 1204, 1266
LmnI GCTCC 1 cut(s) 1309
Lsp1109I GCAGC 6 cut(s) 342, 731, 937, 1078, 1081, 1201
LweI GCATC 3 cut(s) 757, 856, 1174
MaeI CTAG 4 cut(s) 57, 753, 1017, 1299
MaeII ACGT 2 cut(s) 1114, 1411
MaeIII GTNAC 7 cut(s) 191, 404, 509, 554, 653, 1007, 1048
MalI GATC 5 cut(s) 55, 276, 447, 1206, 1268
MboI GATC 5 cut(s) 53, 274, 445, 1204, 1266
MboII GAAGA 5 cut(s) 348, 405, 675, 1110, 1214
MflI RGATCY 2 cut(s) 53, 1204
MhlI GDGCHC 2 cut(s) 1306, 1411
MlsI TGGCCA 1 cut(s) 1135
MluCI AATT 6 cut(s) 376, 532, 604, 730, 991, 1360
MluNI TGGCCA 1 cut(s) 1135
Mly113I GGCGCC 1 cut(s) 36
Mox20I TGGCCA 1 cut(s) 1135
Mph1103I ATGCAT 1 cut(s) 1189
MscI TGGCCA 1 cut(s) 1135
MseI TTAA 1 cut(s) 1253
MslI CAYNNNNRTG 1 cut(s) 1392
Msp20I TGGCCA 1 cut(s) 1135
MspA1I CMGCKG 4 cut(s) 324, 333, 722, 1226
MspI CCGG 2 cut(s) 860, 924
MspR9I CCNGG 3 cut(s) 366, 861, 1316
MvaI CCWGG 2 cut(s) 366, 1316
MvnI CGCG 2 cut(s) 279, 324
NarI GGCGCC 1 cut(s) 36
NciI CCSGG 1 cut(s) 861
NdeI CATATG 2 cut(s) 49, 1198
NdeII GATC 5 cut(s) 53, 274, 445, 1204, 1266
NlaIII CATG 3 cut(s) 701, 1191, 1397
NlaIV GGNNCC 6 cut(s) 37, 292, 690, 922, 1296, 1305
NmeAIII GCCGAG 2 cut(s) 311, 908
NmuCI GTSAC 1 cut(s) 1007
NsiI ATGCAT 1 cut(s) 1189
NspI RCATGY 2 cut(s) 701, 1191
PaqCI CACCTGC 1 cut(s) 827
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PfeI GAWTC 3 cut(s) 1020, 1101, 1163
PflMI CCANNNNNTGG 2 cut(s) 371, 824
PluTI GGCGCC 1 cut(s) 39
PsiI TTATAA 1 cut(s) 477
Psp6I CCWGG 2 cut(s) 364, 1314
PspEI GGTNACC 1 cut(s) 509
PspFI CCCAGC 2 cut(s) 5, 964
PspGI CCWGG 2 cut(s) 364, 1314
PspN4I GGNNCC 6 cut(s) 37, 292, 690, 922, 1296, 1305
PspPI GGNCC 5 cut(s) 800, 830, 857, 890, 1376
PsrI GAACNNNNNNTAC 2 cut(s) 625, 657
PstI CTGCAG 2 cut(s) 838, 1068
PsuI RGATCY 2 cut(s) 53, 1204
PvuII CAGCTG 2 cut(s) 722, 1226
RsaI GTAC 2 cut(s) 14, 680
RsaNI GTAC 2 cut(s) 13, 679
RseI CAYNNNNRTG 1 cut(s) 1392
SacII CCGCGG 1 cut(s) 325
SaqAI TTAA 1 cut(s) 1253
Sau3AI GATC 5 cut(s) 53, 274, 445, 1204, 1266
Sau96I GGNCC 5 cut(s) 800, 830, 857, 890, 1376
SbfI CCTGCAGG 1 cut(s) 838
ScrFI CCNGG 3 cut(s) 366, 861, 1316
SdaI CCTGCAGG 1 cut(s) 838
SduI GDGCHC 2 cut(s) 1306, 1411
SfaNI GCATC 3 cut(s) 757, 856, 1174
SfcI CTRYAG 2 cut(s) 834, 1064
SfiI GGCCNNNNNGGCC 1 cut(s) 888
SfoI GGCGCC 1 cut(s) 37
Sfr303I CCGCGG 1 cut(s) 325
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 3 cut(s) 830, 857, 1376
SmiMI CAYNNNNRTG 1 cut(s) 1392
Sse8387I CCTGCAGG 1 cut(s) 838
Sse9I AATT 6 cut(s) 376, 532, 604, 730, 991, 1360
SspDI GGCGCC 1 cut(s) 35
SspMI CTAG 4 cut(s) 57, 753, 1017, 1299
StyD4I CCNGG 3 cut(s) 364, 859, 1314
StyI CCWWGG 2 cut(s) 658, 1298
TaaI ACNGT 6 cut(s) 17, 299, 515, 683, 1054, 1406
TaiI ACGT 2 cut(s) 1117, 1414
TaqI TCGA 2 cut(s) 250, 931
TasI AATT 6 cut(s) 376, 532, 604, 730, 991, 1360
TauI GCSGC 8 cut(s) 63, 180, 240, 324, 456, 459, 471, 706
TfiI GAWTC 3 cut(s) 1020, 1101, 1163
Tru1I TTAA 1 cut(s) 1253
Tru9I TTAA 1 cut(s) 1253
TscAI CASTG 2 cut(s) 70, 466
TseFI GTSAC 1 cut(s) 1007
TseI GCWGC 6 cut(s) 330, 719, 950, 1066, 1069, 1214
Tsp45I GTSAC 1 cut(s) 1007
TspDTI ATGAA 3 cut(s) 1014, 1176, 1215
TspGWI ACGGA 3 cut(s) 108, 971, 1197
TspRI CASTG 2 cut(s) 70, 466
Van91I CCANNNNNTGG 2 cut(s) 371, 824
VneI GTGCAC 1 cut(s) 1407
VpaK11BI GGWCC 3 cut(s) 830, 857, 1376
XagI CCTNNNNNAGG 1 cut(s) 363
XapI RAATTY 1 cut(s) 376
XceI RCATGY 2 cut(s) 701, 1191
XmaJI CCTAGG 1 cut(s) 1298
XspI CTAG 4 cut(s) 57, 753, 1017, 1299
Zsp2I ATGCAT 1 cut(s) 1189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.