FvH4_3g39510

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007365
Physical Location & Seq
Forward (+)
33595341 .. 33600205
4865 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39510.t2

Sequence Viewer

Length: 1368 bp
ATGGCTGGCATGTATGGTCAGGACGGCGGCGCCGCCCCGCCCTATGGATCTAGCGGTGGCGGTGGCTACGGTGGCTCTGGAGGATACGGAGGCGGTTCCGGAGGTTATGGAGGAGGCGGTGGATATGGAAGTAAAGGTGGTGATGGCGGTGGTTACGGTGGTGGAGGCCGTGGTGGTCGAGGTGGAGGAGGATATGGTGGCGGTGGCGGTCGAGGTGGAGGATATCAGGGCGATCGTGGTGGTGGCCGCGGAGGAGGTGGCGGCGGCGGCAGAGGTGGCCGCGGTGGCAGTGGAAGGGATGGTGATTGGCCTTGCCCTAATCCAGGCTGTGGGAATATGAACTTTGCAAGAAGAACCGAGTGTAACAAGTGTGGTACTCCCTCTCCTGCGGGGGGTGGTGGCGGTGGTGGAGACCGTGGTGGAGGTGGTTATAGAGGTGGAAGTGGTGGGGGCTATGGTGATAGCCGTGGTGGCAGAGGTGGTAATTATGATGGGGGTCGAAGTGGCAACTATGAAGGAGGTAAAGGTGGCAGTTATGATGGGGGCAGAGGGGGTGGTTTTGATAGTAGAGGTGGAGGTGGTAGTAGAGGCGGTTCTTATGGTGGTAGCCAAGGAAGAGAAGATGGCGGGTATGGTCAGGCTCCTGCTGCTCCTCCATCTTATGGTGCAGGTGGCAGTTACCAACCGTCATACAATGCCAGTTATGGAACAGATGCAGTGCCACCTCCTACAAGTTATACTGGTGGGCCTGCTTCATATCCTCCATCCTATGGGGGTCCTGCAGGTGGTTATGGTGGTGATGGTTCGGGTGATGCAAGGAGTGGTGGCCGAGGTGGCCCTCCTGCTAAATATGATGGCGGATATGGTAGTGGTGGTGGTCGAGGTGGTTATGGAAGTGCTCCTGCTGAGGCCCCGGCTAAGGTGAAGCAATGTGACGAGAACTGTGATGATACTTGTGACAATGCTAGAATCTACATATCAAATCTGCCACCAGATGTCACAGTTGAGGAACTGCAAGCTCTTTTTGGAGGCATTGGACAAGTTGGAAGAATTAAGCAGAAACGTGGGTACAAGGATCAGTGGCCATATAACATCAAGATTTACACAGATGATTCGGGAAAGAACAAAGGTGATGCTTGTTTAGCATATGAAGATCCAAATGCTGCACACTCAGCCGGCAGCTTTTACAATGGTCATGACGTTAGAGGCTATAAAATTAGTGTTGCAATGGCAGAGAGGTCGGCACCTAGGACTTACGACAATGGTGGTGGTAGAGGTGGTTATGGGGGTGGTGACAGGCGCAGGGATAACCGAGATGGTGGCCCTGACAGACATCAGCATGGTGGAAACCGTTCGCGTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
RRM_1 zf-RanBP

Protein Analysis

456

Amino Acids

44.07

Weight (kDa)

8.96

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 99 - 129 2.7e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 659, 773
Acc36I ACCTGC 2 cut(s) 659, 773
AccB1I GGYRCC 2 cut(s) 29, 1243
AccB7I CCANNNNNTGG 3 cut(s) 329, 662, 770
AccII CGCG 3 cut(s) 249, 282, 1357
AccIII TCCGGA 1 cut(s) 98
AclWI GGATC 3 cut(s) 55, 1083, 1148
AcoI YGGCCR 4 cut(s) 244, 277, 826, 1082
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 376, 1070
AfiI CCNNNNNNNGG 8 cut(s) 44, 323, 329, 392, 662, 770, 785, 919
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 2 cut(s) 1019, 1182
AluI AGCT 2 cut(s) 1019, 1182
Alw21I GWGCWC 1 cut(s) 901
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 3 cut(s) 55, 1083, 1148
Aor13HI TCCGGA 1 cut(s) 98
ApeKI GCWGC 3 cut(s) 647, 1163, 1179
Asp700I GAANNNNTTC 1 cut(s) 1351
AspA2I CCTAGG 1 cut(s) 1247
AspLEI GCGC 2 cut(s) 32, 1302
AspS9I GGNCC 5 cut(s) 746, 776, 836, 910, 1322
AsuC2I CCSGG 1 cut(s) 914
AsuHPI GGTGA 8 cut(s) 152, 314, 470, 809, 821, 934, 1142, 1304
AvaII GGWCC 1 cut(s) 776
AvrII CCTAGG 1 cut(s) 1247
BalI TGGCCA 1 cut(s) 1084
BanI GGYRCC 2 cut(s) 29, 1243
Bbv12I GWGCWC 1 cut(s) 901
BbvCI CCTCAGC 1 cut(s) 906
BbvI GCAGC 3 cut(s) 634, 1150, 1191
BceAI ACGGC 3 cut(s) 40, 153, 450
BcgI CGANNNNNNTGC 2 cut(s) 1221, 1255
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 1 cut(s) 77
BcnI CCSGG 1 cut(s) 914
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 3 cut(s) 51, 966, 1248
BfmI CTRYAG 1 cut(s) 780
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 2 cut(s) 659, 773
BfuI GTATCC 1 cut(s) 77
BglI GCCNNNNNGGC 3 cut(s) 285, 471, 834
BlnI CCTAGG 1 cut(s) 1247
Bme1390I CCNGG 2 cut(s) 324, 914
Bme18I GGWCC 1 cut(s) 776
BmgT120I GGNCC 5 cut(s) 746, 776, 836, 910, 1322
BmiI GGNNCC 6 cut(s) 31, 97, 642, 777, 912, 1245
BmrFI CCNGG 2 cut(s) 324, 914
BmsI GCATC 3 cut(s) 703, 802, 1123
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 2 cut(s) 906, 918
BpuMI CCSGG 1 cut(s) 914
BsaHI GRCGYC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 405
BsaJI CCNNGG 9 cut(s) 169, 247, 280, 415, 466, 610, 829, 912, 1247
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 8 cut(s) 44, 323, 329, 392, 662, 770, 785, 919
Bse118I RCCGGY 1 cut(s) 1175
Bse1I ACTGG 2 cut(s) 699, 745
Bse3DI GCAATG 2 cut(s) 935, 1233
BseAI TCCGGA 1 cut(s) 98
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 9 cut(s) 169, 247, 280, 415, 466, 610, 829, 912, 1247
BseGI GGATG 2 cut(s) 304, 764
BseLI CCNNNNNNNGG 8 cut(s) 44, 323, 329, 392, 662, 770, 785, 919
BseMI GCAATG 2 cut(s) 935, 1233
BseMII CTCAG 2 cut(s) 897, 1185
BseNI ACTGG 2 cut(s) 699, 745
BseRI GAGGAG 4 cut(s) 126, 201, 267, 642
BseXI GCAGC 3 cut(s) 634, 1150, 1191
BsgI GTGCAG 2 cut(s) 687, 1149
Bsh1236I CGCG 3 cut(s) 249, 282, 1357
Bsh1285I CGRYCG 2 cut(s) 211, 235
BshNI GGYRCC 2 cut(s) 29, 1243
BsiEI CGRYCG 2 cut(s) 211, 235
BsiHKAI GWGCWC 1 cut(s) 901
BsiSI CCGG 3 cut(s) 99, 914, 1176
BslI CCNNNNNNNGG 8 cut(s) 44, 323, 329, 392, 662, 770, 785, 919
BsmAI GTCTC 1 cut(s) 405
Bso31I GGTCTC 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 901
Bsp13I TCCGGA 1 cut(s) 98
Bsp143I GATC 4 cut(s) 47, 232, 1075, 1153
BspCNI CTCAG 2 cut(s) 898, 1184
BspEI TCCGGA 1 cut(s) 98
BspFNI CGCG 3 cut(s) 249, 282, 1357
BspHI TCATGA 1 cut(s) 1195
BspLI GGNNCC 6 cut(s) 31, 97, 642, 777, 912, 1245
BspMAI CTGCAG 1 cut(s) 784
BspMI ACCTGC 2 cut(s) 659, 773
BspPI GGATC 3 cut(s) 55, 1083, 1148
BspT107I GGYRCC 2 cut(s) 29, 1243
BspTNI GGTCTC 1 cut(s) 405
BsrDI GCAATG 2 cut(s) 935, 1233
BsrFI RCCGGY 1 cut(s) 1175
BsrI ACTGG 2 cut(s) 699, 745
BssAI RCCGGY 1 cut(s) 1175
BssECI CCNNGG 9 cut(s) 169, 247, 280, 415, 466, 610, 829, 912, 1247
BssMI GATC 4 cut(s) 47, 232, 1075, 1153
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 610, 1247
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 7 cut(s) 71, 158, 416, 687, 944, 1003, 1352
Bst6I CTCTTC 1 cut(s) 610
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 4 cut(s) 7, 750, 1017, 1177
BstDEI CTNAG 3 cut(s) 906, 918, 1171
BstDSI CCRYGG 5 cut(s) 169, 247, 280, 415, 466
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 304, 764
BstFNI CGCG 3 cut(s) 249, 282, 1357
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 2 cut(s) 32, 1302
BstKTI GATC 4 cut(s) 50, 235, 1078, 1156
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 4 cut(s) 47, 232, 1075, 1153
BstMCI CGRYCG 2 cut(s) 211, 235
BstMWI GCNNNNNNNGC 9 cut(s) 72, 267, 276, 285, 471, 647, 834, 1142, 1172
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 2 cut(s) 322, 912
BstSFI CTRYAG 1 cut(s) 780
BstUI CGCG 3 cut(s) 249, 282, 1357
BstV1I GCAGC 3 cut(s) 634, 1150, 1191
BstX2I RGATCY 2 cut(s) 47, 1153
BstYI RGATCY 2 cut(s) 47, 1153
BsuI GTATCC 1 cut(s) 77
BtgI CCRYGG 5 cut(s) 169, 247, 280, 415, 466
BtsCI GGATG 2 cut(s) 304, 764
BtsI GCAGTG 2 cut(s) 295, 723
BtsIMutI CAGTG 3 cut(s) 295, 723, 1085
BveI ACCTGC 2 cut(s) 659, 773
Cac8I GCNNGC 4 cut(s) 7, 750, 1017, 1177
CciI TCATGA 1 cut(s) 1195
CfoI GCGC 2 cut(s) 32, 1302
Cfr10I RCCGGY 1 cut(s) 1175
Cfr13I GGNCC 5 cut(s) 746, 776, 836, 910, 1322
Cfr42I CCGCGG 2 cut(s) 250, 283
CseI GACGC 1 cut(s) 1346
Csp6I GTAC 2 cut(s) 375, 1069
CspCI CAANNNNNGTGG 2 cut(s) 1249, 1284
CviAII CATG 3 cut(s) 10, 1196, 1340
CviQI GTAC 2 cut(s) 375, 1069
DdeI CTNAG 3 cut(s) 906, 918, 1171
DinI GGCGCC 1 cut(s) 31
DpnI GATC 4 cut(s) 49, 234, 1077, 1155
DpnII GATC 4 cut(s) 47, 232, 1075, 1153
EaeI YGGCCR 4 cut(s) 244, 277, 826, 1082
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
EciI GGCGGA 1 cut(s) 873
Eco130I CCWWGG 2 cut(s) 610, 1247
Eco31I GGTCTC 1 cut(s) 405
Eco32I GATATC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 776
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoO109I RGGNCCY 2 cut(s) 776, 910
EcoRII CCWGG 1 cut(s) 322
EcoRV GATATC 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 610, 1247
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
ErhI CCWWGG 2 cut(s) 610, 1247
FaeI CATG 3 cut(s) 13, 1199, 1343
FatI CATG 3 cut(s) 9, 1195, 1339
FauI CCCGC 3 cut(s) 45, 382, 620
FauNDI CATATG 1 cut(s) 1147
FokI GGATG 2 cut(s) 311, 751
FspBI CTAG 3 cut(s) 51, 966, 1248
GlaI GCGC 2 cut(s) 31, 1301
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 33
HapII CCGG 3 cut(s) 99, 914, 1176
HgaI GACGC 1 cut(s) 1346
HhaI GCGC 2 cut(s) 32, 1302
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 13, 1199, 1343
Hin6I GCGC 2 cut(s) 30, 1300
HinP1I GCGC 2 cut(s) 30, 1300
HinfI GANTC 2 cut(s) 969, 1112
HpaII CCGG 3 cut(s) 99, 914, 1176
HphI GGTGA 8 cut(s) 152, 314, 470, 809, 821, 934, 1142, 1304
Hpy188III TCNNGA 6 cut(s) 20, 78, 99, 1096, 1116, 1196
HpyAV CCTTC 2 cut(s) 288, 509
HpyCH4III ACNGT 7 cut(s) 71, 158, 416, 687, 944, 1003, 1352
HpyCH4IV ACGT 2 cut(s) 1063, 1200
HpyCH4V TGCA 8 cut(s) 347, 668, 716, 782, 815, 1015, 1166, 1226
HpyF10VI GCNNNNNNNGC 9 cut(s) 72, 267, 276, 285, 471, 647, 834, 1142, 1172
HpyF3I CTNAG 3 cut(s) 906, 918, 1171
HpySE526I ACGT 2 cut(s) 1063, 1200
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 13, 1199, 1343
HspAI GCGC 2 cut(s) 30, 1300
KasI GGCGCC 1 cut(s) 29
Kpn2I TCCGGA 1 cut(s) 98
KroI GCCGGC 1 cut(s) 1175
KroNI GCCGGC 1 cut(s) 1177
KspI CCGCGG 2 cut(s) 250, 283
Kzo9I GATC 4 cut(s) 47, 232, 1075, 1153
LmnI GCTCC 3 cut(s) 646, 655, 904
Lsp1109I GCAGC 3 cut(s) 634, 1150, 1191
LweI GCATC 3 cut(s) 703, 802, 1123
MaeI CTAG 3 cut(s) 51, 966, 1248
MaeII ACGT 2 cut(s) 1063, 1200
MaeIII GTNAC 7 cut(s) 152, 362, 677, 932, 956, 997, 1292
MalI GATC 4 cut(s) 49, 234, 1077, 1155
MboI GATC 4 cut(s) 47, 232, 1075, 1153
MboII GAAGA 5 cut(s) 363, 627, 632, 1059, 1163
MflI RGATCY 2 cut(s) 47, 1153
MhlI GDGCHC 1 cut(s) 901
MlsI TGGCCA 1 cut(s) 1084
MluCI AATT 3 cut(s) 484, 1050, 1215
MluNI TGGCCA 1 cut(s) 1084
Mly113I GGCGCC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 1024
Mox20I TGGCCA 1 cut(s) 1084
MroI TCCGGA 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 1175
MroXI GAANNNNTTC 1 cut(s) 1351
MscI TGGCCA 1 cut(s) 1084
MseI TTAA 1 cut(s) 1053
MslI CAYNNNNRTG 1 cut(s) 1338
Msp20I TGGCCA 1 cut(s) 1084
MspA1I CMGCKG 2 cut(s) 249, 282
MspI CCGG 3 cut(s) 99, 914, 1176
MspR9I CCNGG 2 cut(s) 324, 914
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 3 cut(s) 249, 282, 1357
MwoI GCNNNNNNNGC 9 cut(s) 72, 267, 276, 285, 471, 647, 834, 1142, 1172
NaeI GCCGGC 1 cut(s) 1177
NarI GGCGCC 1 cut(s) 30
NciI CCSGG 1 cut(s) 914
NdeI CATATG 1 cut(s) 1147
NdeII GATC 4 cut(s) 47, 232, 1075, 1153
NgoMIV GCCGGC 1 cut(s) 1175
NlaIII CATG 3 cut(s) 13, 1199, 1343
NlaIV GGNNCC 6 cut(s) 31, 97, 642, 777, 912, 1245
NmeAIII GCCGAG 1 cut(s) 854
NmuCI GTSAC 4 cut(s) 932, 956, 997, 1292
NspI RCATGY 1 cut(s) 13
PagI TCATGA 1 cut(s) 1195
PaqCI CACCTGC 2 cut(s) 659, 773
PdiI GCCGGC 1 cut(s) 1177
PdmI GAANNNNTTC 1 cut(s) 1351
PfeI GAWTC 2 cut(s) 969, 1112
PflMI CCANNNNNTGG 3 cut(s) 329, 662, 770
Ple19I CGATCG 1 cut(s) 235
PluTI GGCGCC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 776
Psp5II RGGWCCY 1 cut(s) 776
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 6 cut(s) 31, 97, 642, 777, 912, 1245
PspPI GGNCC 5 cut(s) 746, 776, 836, 910, 1322
PspPPI RGGWCCY 1 cut(s) 776
PsrI GAACNNNNNNTAC 2 cut(s) 577, 609
PstI CTGCAG 1 cut(s) 784
PsuI RGATCY 2 cut(s) 47, 1153
PvuI CGATCG 1 cut(s) 235
RsaI GTAC 2 cut(s) 376, 1070
RsaNI GTAC 2 cut(s) 375, 1069
RseI CAYNNNNRTG 1 cut(s) 1338
SacII CCGCGG 2 cut(s) 250, 283
SaqAI TTAA 1 cut(s) 1053
Sau3AI GATC 4 cut(s) 47, 232, 1075, 1153
Sau96I GGNCC 5 cut(s) 746, 776, 836, 910, 1322
SbfI CCTGCAGG 1 cut(s) 784
ScrFI CCNGG 2 cut(s) 324, 914
SdaI CCTGCAGG 1 cut(s) 784
SduI GDGCHC 1 cut(s) 901
SfaNI GCATC 3 cut(s) 703, 802, 1123
SfcI CTRYAG 1 cut(s) 780
SfiI GGCCNNNNNGGCC 1 cut(s) 834
SfoI GGCGCC 1 cut(s) 31
Sfr303I CCGCGG 2 cut(s) 250, 283
SgrBI CCGCGG 2 cut(s) 250, 283
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 1 cut(s) 1338
Sse8387I CCTGCAGG 1 cut(s) 784
Sse9I AATT 3 cut(s) 484, 1050, 1215
SspDI GGCGCC 1 cut(s) 29
SspMI CTAG 3 cut(s) 51, 966, 1248
StyD4I CCNGG 2 cut(s) 322, 912
StyI CCWWGG 2 cut(s) 610, 1247
TaaI ACNGT 7 cut(s) 71, 158, 416, 687, 944, 1003, 1352
TaiI ACGT 2 cut(s) 1066, 1203
TaqI TCGA 4 cut(s) 178, 211, 499, 880
TasI AATT 3 cut(s) 484, 1050, 1215
TauI GCSGC 7 cut(s) 30, 35, 249, 264, 267, 270, 282
TfiI GAWTC 2 cut(s) 969, 1112
Tru1I TTAA 1 cut(s) 1053
Tru9I TTAA 1 cut(s) 1053
TscAI CASTG 3 cut(s) 295, 723, 1085
TseFI GTSAC 4 cut(s) 932, 956, 997, 1292
TseI GCWGC 3 cut(s) 647, 1163, 1179
Tsp45I GTSAC 4 cut(s) 932, 956, 997, 1292
TspDTI ATGAA 4 cut(s) 353, 528, 744, 1164
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 3 cut(s) 295, 723, 1085
Van91I CCANNNNNTGG 3 cut(s) 329, 662, 770
VpaK11BI GGWCC 1 cut(s) 776
XagI CCTNNNNNAGG 1 cut(s) 321
XceI RCATGY 1 cut(s) 13
XmaJI CCTAGG 1 cut(s) 1247
XmnI GAANNNNTTC 1 cut(s) 1351
XspI CTAG 3 cut(s) 51, 966, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.