Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007365

Physical Location & Seq

Genomic Coordinates Forward (+)

78065365 .. 78069597

Gene Structure 4233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG497000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGATATTGAAATTGGCAATACTTGCATATAGCTGTGGGAATGTGAACTTTGCAAGAAGAACTGAGTGTAACAAGTGTGGCACGCCCTCTCCTGCGGGTGCTGGTGGCGGTGGGGGAGACCGTGGTGGTGGAGGTGGTTATAATAGAGGTGGAAGTGGTGGGGGATATGGTGATAACCGTGGTGGCAGAGGTGGTAATTATGATGGGGGTCGAAGTGGCAACTATGAAGGAGGTAAAGGTAGCAATTACGATGGAGGCAGAGGGAGTGGTTTTGATAGTAGAGGTGGAGGAGGTGGGAGTAGAGGTGGTTCTTATGGTGGTAACCAAGGAAGAGATGATGGTGGGTACGGTCAGGCTCCTGCAGCTGCTCCTCCATCTTATGGTGCAGGTGGCAGTTACCCACCATCGTACAATGCTAATTATGGAACAGATGCAGTCCCTCCTCCTACAAGCTATACTGGTGGGCCTGCTTCATATCCCCCATCCTATGGTGGTCCTGCAGGTGGTTATGGTGGTGATGGTCCGGGTGATGCAAGGAGTGGCGGCCGAGGTGGCCCTCCTGCTAAATATGATGGCGGATATGGTGGTGGTGGTAGAGGTGGTTATGGAAGTGCTCCTACAGAGGCCCCTGCTAAGGTGAAGCAATGCGATGAGAACTGTGATGATACTTGTGACAATGCTAGAATCTACATATCAAATCTGCCACCAGATGTCACGGTCGATGAACTGCAAGCTCTTTTTGGAGGCATTGGACAAGTTGGGAGAATCAAGCAGAAACGTGGGTACAAGGATCAGTGGCCATATAACATCAAAATTTACACAGATGAGTCGGGAAAGAACAAAGGTGATGCATGTTTAGCCTATGAAGATCCAAATGCTGCACATTCAGCTGGCAGTTTTTACAACGGTCATGACATAAGGGGCTATAAGATCAGTGTTGCGATGGCAGAGAGGTCGGCACCTAGGGCTTACGATAATGGTGGTGGTAGAGGTGGTTATGGGGGCGGTGGGCGCAGGGACAATTATCGAGATGGTGGACCTGACAGACATCAGCATGGTGGAAACCGTTCACGTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

RRM_1 zf-RanBP

Protein Analysis

360

Amino Acids

36.3

Weight (kDa)

8.77

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58470 AT5G58470
fragaria_vesca	FvH4_3g39510 FvH4_3g39510 FvH4_3g39510 FvH4_3g39510
malus_domestica	MD03G1060300.v1.1 MD11G1063400.v1.1
prunus_persica	Prupe.6G050700_v2.0.a1 Prupe.6G050700_v2.0.a1
pyrus_communis	pycom03g04840 pycom11g05310
rosa_chinensis	RchiOBHm_Chr5g0071281
rosa_laevigata	RLG00000036198
rosa_multiflora	Rmu_sc0006990.1_g000011
rosa_roxburghii	Rroxscaffold_1G00009860
rosa_rugosa	Rorug05G0411100 Rorug05G0411100 Rorug05G0411100 Rorug05G0411100
rosa_samantha	Rh5AG467300 Rh5BG485800 Rh5CG510200 Rh5DG497000
rosa_wichuraiana	Rw5G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AarI	CACCTGC	2 cut(s)	377, 491
Acc36I	ACCTGC	2 cut(s)	377, 491
AccB1I	GGYRCC	1 cut(s)	958
AccB7I	CCANNNNNTGG	2 cut(s)	380, 488
AciI	CCGC	5 cut(s)	95, 108, 543, 576, 1005
AclWI	GGATC	2 cut(s)	798, 863
AcoI	YGGCCR	2 cut(s)	544, 797
AcsI	RAATTY	1 cut(s)	813
AfaI	GTAC	3 cut(s)	347, 410, 785
AfiI	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
AgsI	TTSAA	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	1073
AluBI	AGCT	5 cut(s)	33, 365, 453, 734, 890
AluI	AGCT	5 cut(s)	33, 365, 453, 734, 890
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	798, 863
AoxI	GGCC	5 cut(s)	464, 544, 553, 624, 797
ApeKI	GCWGC	3 cut(s)	362, 365, 878
ApoI	RAATTY	1 cut(s)	813
Asp700I	GAANNNNTTC	1 cut(s)	1066
AspA2I	CCTAGG	1 cut(s)	962
AspLEI	GCGC	1 cut(s)	1014
AspS9I	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	5 cut(s)	182, 527, 539, 649, 857
AvaII	GGWCC	3 cut(s)	494, 521, 1037
AvrII	CCTAGG	1 cut(s)	962
BalI	TGGCCA	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	958
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	352, 374, 865
BcgI	CGANNNNNNTGC	2 cut(s)	936, 970
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	681, 963
BfmI	CTRYAG	3 cut(s)	360, 498, 618
BfuAI	ACCTGC	2 cut(s)	377, 491
BglI	GCCNNNNNGGC	1 cut(s)	552
BisI	GCNGC	4 cut(s)	363, 366, 544, 879
BlnI	CCTAGG	1 cut(s)	962
BlsI	GCNGC	4 cut(s)	364, 367, 545, 880
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	3 cut(s)	494, 521, 1037
BmgBI	CACGTC	1 cut(s)	1073
BmgT120I	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
BmiI	GGNNCC	3 cut(s)	357, 627, 960
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	3 cut(s)	421, 520, 838
Bpu10I	CCTNAGC	1 cut(s)	633
BpuMI	CCSGG	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	5 cut(s)	121, 178, 325, 547, 962
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 289, 319
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
Bse1I	ACTGG	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	650
BseDI	CCNNGG	5 cut(s)	121, 178, 325, 547, 962
BseGI	GGATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	3 cut(s)	303, 360, 432
BseX3I	CGGCCG	1 cut(s)	544
BseXI	GCAGC	3 cut(s)	352, 374, 865
BsgI	GTGCAG	2 cut(s)	405, 864
Bsh1285I	CGRYCG	2 cut(s)	547, 720
BshFI	GGCC	5 cut(s)	466, 546, 555, 626, 799
BshNI	GGYRCC	1 cut(s)	958
BsiEI	CGRYCG	2 cut(s)	547, 720
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	2 cut(s)	422, 1031
BslI	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	422, 1031
BsnI	GGCC	5 cut(s)	466, 546, 555, 626, 799
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	3 cut(s)	790, 868, 930
BspACI	CCGC	5 cut(s)	95, 108, 543, 576, 1005
BspANI	GGCC	5 cut(s)	466, 546, 555, 626, 799
BspCNI	CTCAG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	3 cut(s)	357, 627, 960
BspMAI	CTGCAG	2 cut(s)	364, 502
BspMI	ACCTGC	2 cut(s)	377, 491
BspPI	GGATC	2 cut(s)	798, 863
BspT107I	GGYRCC	1 cut(s)	958
BspTNI	GGTCTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	5 cut(s)	121, 178, 325, 547, 962
BssMI	GATC	3 cut(s)	790, 868, 930
BssT1I	CCWWGG	2 cut(s)	325, 962
Bst4CI	ACNGT	7 cut(s)	122, 179, 350, 659, 718, 908, 1067
Bst6I	CTCTTC	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	4 cut(s)	83, 468, 732, 892
BstDEI	CTNAG	2 cut(s)	63, 633
BstDSI	CCRYGG	2 cut(s)	121, 178
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	1014
BstKTI	GATC	3 cut(s)	793, 871, 933
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	3 cut(s)	790, 868, 930
BstMCI	CGRYCG	2 cut(s)	547, 720
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 362, 552, 857, 887, 965, 1011
BstNSI	RCATGY	1 cut(s)	855
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	3 cut(s)	360, 498, 618
BstV1I	GCAGC	3 cut(s)	352, 374, 865
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
BstZI	CGGCCG	1 cut(s)	544
BsuRI	GGCC	5 cut(s)	466, 546, 555, 626, 799
BtgI	CCRYGG	2 cut(s)	121, 178
BtgZI	GCGATG	2 cut(s)	663, 956
BtrI	CACGTC	1 cut(s)	1073
BtsCI	GGATG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	800, 940
BveI	ACCTGC	2 cut(s)	377, 491
Cac8I	GCNNGC	4 cut(s)	83, 468, 732, 892
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	1 cut(s)	1014
Cfr13I	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
Csp6I	GTAC	3 cut(s)	346, 409, 784
CviAII	CATG	3 cut(s)	852, 911, 1055
CviQI	GTAC	3 cut(s)	346, 409, 784
DdeI	CTNAG	2 cut(s)	63, 633
DpnI	GATC	3 cut(s)	792, 870, 932
DpnII	GATC	3 cut(s)	790, 868, 930
EaeI	YGGCCR	2 cut(s)	544, 797
EagI	CGGCCG	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	591
EclXI	CGGCCG	1 cut(s)	544
Eco130I	CCWWGG	2 cut(s)	325, 962
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	3 cut(s)	494, 521, 1037
Eco52I	CGGCCG	1 cut(s)	544
Eco91I	GGTNACC	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	325, 962
EcoT22I	ATGCAT	1 cut(s)	853
ErhI	CCWWGG	2 cut(s)	325, 962
FaeI	CATG	3 cut(s)	855, 914, 1058
FaqI	GGGAC	2 cut(s)	422, 1031
FatI	CATG	3 cut(s)	851, 910, 1054
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	363, 366, 544, 879
FokI	GGATG	1 cut(s)	469
Fsp4HI	GCNGC	4 cut(s)	363, 366, 544, 879
FspBI	CTAG	2 cut(s)	681, 963
GlaI	GCGC	1 cut(s)	1013
GluI	GCNGC	4 cut(s)	363, 366, 544, 879
HaeIII	GGCC	5 cut(s)	466, 546, 555, 626, 799
HapII	CCGG	1 cut(s)	524
HhaI	GCGC	1 cut(s)	1014
Hin1II	CATG	3 cut(s)	855, 914, 1058
Hin6I	GCGC	1 cut(s)	1012
HinP1I	GCGC	1 cut(s)	1012
HinfI	GANTC	3 cut(s)	684, 765, 827
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	5 cut(s)	182, 527, 539, 649, 857
Hpy166II	GTNNAC	3 cut(s)	46, 1037, 1070
Hpy188III	TCNNGA	3 cut(s)	831, 911, 1028
Hpy8I	GTNNAC	3 cut(s)	46, 1037, 1070
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	7 cut(s)	122, 179, 350, 659, 718, 908, 1067
HpyCH4IV	ACGT	2 cut(s)	778, 1072
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 362, 552, 857, 887, 965, 1011
HpyF3I	CTNAG	2 cut(s)	63, 633
HpySE526I	ACGT	2 cut(s)	778, 1072
Hsp92II	CATG	3 cut(s)	855, 914, 1058
HspAI	GCGC	1 cut(s)	1012
Kzo9I	GATC	3 cut(s)	790, 868, 930
LmnI	GCTCC	3 cut(s)	361, 373, 619
Lsp1109I	GCAGC	3 cut(s)	352, 374, 865
LweI	GCATC	3 cut(s)	421, 520, 838
MaeI	CTAG	2 cut(s)	681, 963
MaeII	ACGT	2 cut(s)	778, 1072
MaeIII	GTNAC	5 cut(s)	68, 320, 395, 671, 712
MalI	GATC	3 cut(s)	792, 870, 932
MboI	GATC	3 cut(s)	790, 868, 930
MboII	GAAGA	3 cut(s)	69, 342, 878
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	1 cut(s)	616
MlsI	TGGCCA	1 cut(s)	799
MluCI	AATT	6 cut(s)	11, 196, 244, 418, 813, 1021
MluNI	TGGCCA	1 cut(s)	799
MlyI	GAGTC	1 cut(s)	836
Mox20I	TGGCCA	1 cut(s)	799
Mph1103I	ATGCAT	1 cut(s)	853
MroXI	GAANNNNTTC	1 cut(s)	1066
MscI	TGGCCA	1 cut(s)	799
MslI	CAYNNNNRTG	1 cut(s)	1053
Msp20I	TGGCCA	1 cut(s)	799
MspA1I	CMGCKG	2 cut(s)	365, 890
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	7 cut(s)	23, 362, 552, 857, 887, 965, 1011
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	790, 868, 930
NlaIII	CATG	3 cut(s)	855, 914, 1058
NlaIV	GGNNCC	3 cut(s)	357, 627, 960
NmeAIII	GCCGAG	1 cut(s)	572
NmuCI	GTSAC	2 cut(s)	671, 712
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	1 cut(s)	855
PagI	TCATGA	1 cut(s)	910
PaqCI	CACCTGC	2 cut(s)	377, 491
PdmI	GAANNNNTTC	1 cut(s)	1066
PfeI	GAWTC	2 cut(s)	684, 765
PflMI	CCANNNNNTGG	2 cut(s)	380, 488
PkrI	GCNGC	4 cut(s)	364, 367, 545, 880
PleI	GAGTC	1 cut(s)	835
PpsI	GAGTC	1 cut(s)	835
PsiI	TTATAA	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	357, 627, 960
PspPI	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PstI	CTGCAG	2 cut(s)	364, 502
PsuI	RGATCY	1 cut(s)	868
PvuII	CAGCTG	2 cut(s)	365, 890
RsaI	GTAC	3 cut(s)	347, 410, 785
RsaNI	GTAC	3 cut(s)	346, 409, 784
RseI	CAYNNNNRTG	1 cut(s)	1053
SatI	GCNGC	4 cut(s)	363, 366, 544, 879
Sau3AI	GATC	3 cut(s)	790, 868, 930
Sau96I	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
SbfI	CCTGCAGG	1 cut(s)	502
SchI	GAGTC	1 cut(s)	836
ScrFI	CCNGG	1 cut(s)	525
SdaI	CCTGCAGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	421, 520, 838
SfcI	CTRYAG	3 cut(s)	360, 498, 618
SfiI	GGCCNNNNNGGCC	1 cut(s)	552
SinI	GGWCC	3 cut(s)	494, 521, 1037
SmiMI	CAYNNNNRTG	1 cut(s)	1053
Sse8387I	CCTGCAGG	1 cut(s)	502
Sse9I	AATT	6 cut(s)	11, 196, 244, 418, 813, 1021
SsiI	CCGC	5 cut(s)	95, 108, 543, 576, 1005
SspMI	CTAG	2 cut(s)	681, 963
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	2 cut(s)	325, 962
TaaI	ACNGT	7 cut(s)	122, 179, 350, 659, 718, 908, 1067
TaiI	ACGT	2 cut(s)	781, 1075
TaqI	TCGA	3 cut(s)	211, 720, 1027
TasI	AATT	6 cut(s)	11, 196, 244, 418, 813, 1021
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	684, 765
TscAI	CASTG	2 cut(s)	800, 940
TseFI	GTSAC	2 cut(s)	671, 712
TseI	GCWGC	3 cut(s)	362, 365, 878
Tsp45I	GTSAC	2 cut(s)	671, 712
TspDTI	ATGAA	4 cut(s)	240, 462, 738, 879
TspRI	CASTG	2 cut(s)	800, 940
Van91I	CCANNNNNTGG	2 cut(s)	380, 488
VpaK11BI	GGWCC	3 cut(s)	494, 521, 1037
XapI	RAATTY	1 cut(s)	813
XceI	RCATGY	1 cut(s)	855
XmaJI	CCTAGG	1 cut(s)	962
XmnI	GAANNNNTTC	1 cut(s)	1066
XspI	CTAG	2 cut(s)	681, 963
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.