RchiOBHm_Chr5g0071281

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
77189975 .. 77193611
3637 bp
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UTR
Exon/CDS
Intron
PRQ34638

Sequence Viewer

Length: 1413 bp
ATGGCTGGGATGTATGGTCAGGAGGGCGGCGGTGGTGCCGCTCCGCCGTATGGATCTAGCGGCGGTGGTGGCTACGGTGGCTCCGGAGGGTATGGAGGCGGTTCCGGAGGTTATGGAGGAGGCGGTGGCGGTGGAGGCTACGGAGGAGGAGGTGGTGGATATGGAGGTAAAGGCGGCGATAGCGGTGGTTACGGTGGTGGAGGCCGTGGCGGTCGAGGTGGAGGAGGTTATGGTGGCGGTGGCGGTCGAGGTGGAGGATATCAAGGCGACCGTGGTGGCGGCCGCGGAGGTGGTGGCGGCGGCGGCAGAGGTGGCCGTGGTGGCAGTGGAAGGGATGGTGATTGGCCTTGCCCTAATCCAGGCTGTGGGAATGTGAACTTTGCGAGAAGAACTGAGTGTAACAAGTGTGGTACGCCCTCTCCTGCGGGTGCTGGTGGCGGTGGGGGAGACCGTGGTGGTGGAGGTGGTTATAATAGAGGTGGAAGTGGTGGGGGATATGGTGATAACCGTGGTGGCAGAGGTGGTAATTATGATGGGGGTCGAAGTGGCAACTATGAAGGAGGTAAAGGTAGCAATTATGATGGAGGCAGAGGGGGTGGTTTTGATAGTAGAGGTGGAGGAGGTGGGAGTAGAGGTGGTTCTTATGGTGGTAACCAAGGAAGAGATGATGGTGGGTACGGTCAGGCTCCTGCAGCTGCTCCTCCATCTTATGGTGCAGGTGGCAGTTACCCACCATCGTACAATGCTAATTATGGAACAGATGCAGTCCCTCCTCCTACAAGCTATACTGGTGGGCCTGCTTCATATCCCCCATCCTATGGTGGTCCTGCAGGTGCTTATGGTGGTGATGGTCCGGGTGATGCAAGGAGTGGCGGCCGAGGTGGCCCTCCTGCTAAATATGATGGCGGATATGGTGGTGGTGGTCGAGGTGGTTATGCAAGTGCTCCTACAGAGGCCCCTGCTAAGGTGAAGCAATGCGATGAGAACTGTGATGATACTTGTGACAATGCTAGAATCTACATTTCAAGTCTGCCACCAGATGTCACGGTCGATGAACTGCAAGCTCTTTTTGGAGGCATTGGACAAGTTGGGAGAATCAAGCAGAAACGTGGGTACAAGGATCAGTGGCCATATAACATCAAAATTTACACAGATGAGTCGGGAAAGAACAAAGGTGATGCATGTTTAGCCTATGAAGATCCAAATGCTGCACATTCAGCTGGCAGTTTTTACAACGGTCATGACATAAGGGGCTATAAGATCAGTGTTGCGATGGCAGAGAGGTCGGCACCTAGGGCTTACGACAATGGTGGTGGTAGAGGTGGTTATGGGGGCGGTGGGCGCAGGGACAATTATCGAGATGGTGGACCTGACAGACATCAGCATGGTGGAAACCGTTCACGTCCATATTGA
Functional Annotation

Protein Analysis

470

Amino Acids

45.13

Weight (kDa)

8.95

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 111 - 141 1.5e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AarI CACCTGC 2 cut(s) 707, 821
Acc36I ACCTGC 2 cut(s) 707, 821
AccB1I GGYRCC 2 cut(s) 35, 1288
AccB7I CCANNNNNTGG 3 cut(s) 365, 710, 818
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 1 cut(s) 285
AccIII TCCGGA 2 cut(s) 83, 104
AclWI GGATC 3 cut(s) 61, 1128, 1193
AcoI YGGCCR 4 cut(s) 280, 313, 874, 1127
AcsI RAATTY 1 cut(s) 1143
AfaI GTAC 4 cut(s) 412, 677, 740, 1115
AfiI CCNNNNNNNGG 6 cut(s) 50, 359, 365, 710, 818, 964
AgsI TTSAA 1 cut(s) 1026
AjiI CACGTC 1 cut(s) 1403
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 4 cut(s) 695, 783, 1064, 1220
AluI AGCT 4 cut(s) 695, 783, 1064, 1220
Alw21I GWGCWC 1 cut(s) 946
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 3 cut(s) 61, 1128, 1193
Aor13HI TCCGGA 2 cut(s) 83, 104
AoxI GGCC 9 cut(s) 202, 280, 313, 344, 794, 874, 883, 954, 1127
ApeKI GCWGC 3 cut(s) 692, 695, 1208
ApoI RAATTY 1 cut(s) 1143
Asp700I GAANNNNTTC 1 cut(s) 1396
AspA2I CCTAGG 1 cut(s) 1292
AspLEI GCGC 1 cut(s) 1344
AspS9I GGNCC 6 cut(s) 794, 824, 851, 884, 955, 1367
AsuC2I CCSGG 1 cut(s) 855
AsuHPI GGTGA 6 cut(s) 350, 512, 857, 869, 979, 1187
AvaII GGWCC 3 cut(s) 824, 851, 1367
AvrII CCTAGG 1 cut(s) 1292
BalI TGGCCA 1 cut(s) 1129
BanI GGYRCC 2 cut(s) 35, 1288
Bbv12I GWGCWC 1 cut(s) 946
BbvI GCAGC 3 cut(s) 682, 704, 1195
BceAI ACGGC 3 cut(s) 31, 189, 300
BcgI CGANNNNNNTGC 2 cut(s) 1266, 1300
BciT130I CCWGG 1 cut(s) 360
BcnI CCSGG 1 cut(s) 855
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 3 cut(s) 57, 1011, 1293
BfmI CTRYAG 3 cut(s) 690, 828, 948
BfuAI ACCTGC 2 cut(s) 707, 821
BglI GCCNNNNNGGC 2 cut(s) 321, 882
BlnI CCTAGG 1 cut(s) 1292
Bme1390I CCNGG 2 cut(s) 360, 855
Bme18I GGWCC 3 cut(s) 824, 851, 1367
BmgBI CACGTC 1 cut(s) 1403
BmgT120I GGNCC 6 cut(s) 794, 824, 851, 884, 955, 1367
BmiI GGNNCC 6 cut(s) 37, 82, 103, 687, 957, 1290
BmrFI CCNGG 2 cut(s) 360, 855
BmsI GCATC 3 cut(s) 751, 850, 1168
Bpu10I CCTNAGC 1 cut(s) 963
BpuMI CCSGG 1 cut(s) 855
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 9 cut(s) 205, 271, 283, 316, 451, 508, 655, 877, 1292
BsaWI WCCGGW 2 cut(s) 83, 104
BsaXI ACNNNNNCTCC 6 cut(s) 65, 95, 403, 433, 619, 649
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 359, 365, 710, 818, 964
Bse1I ACTGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 980
BseAI TCCGGA 2 cut(s) 83, 104
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 9 cut(s) 205, 271, 283, 316, 451, 508, 655, 877, 1292
BseGI GGATG 3 cut(s) 15, 340, 812
BseLI CCNNNNNNNGG 6 cut(s) 50, 359, 365, 710, 818, 964
BseMI GCAATG 1 cut(s) 980
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 793
BseRI GAGGAG 7 cut(s) 132, 159, 162, 237, 633, 690, 762
BseX3I CGGCCG 2 cut(s) 280, 874
BseXI GCAGC 3 cut(s) 682, 704, 1195
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 2 cut(s) 735, 1194
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 6 cut(s) 214, 247, 271, 283, 877, 1050
BshFI GGCC 9 cut(s) 204, 282, 315, 346, 796, 876, 885, 956, 1129
BshNI GGYRCC 2 cut(s) 35, 1288
BsiEI CGRYCG 6 cut(s) 214, 247, 271, 283, 877, 1050
BsiHKAI GWGCWC 1 cut(s) 946
BsiSI CCGG 3 cut(s) 84, 105, 854
BslFI GGGAC 2 cut(s) 752, 1361
BslI CCNNNNNNNGG 6 cut(s) 50, 359, 365, 710, 818, 964
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 2 cut(s) 752, 1361
BsnI GGCC 9 cut(s) 204, 282, 315, 346, 796, 876, 885, 956, 1129
Bso31I GGTCTC 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 946
Bsp13I TCCGGA 2 cut(s) 83, 104
Bsp143I GATC 4 cut(s) 53, 1120, 1198, 1260
BspANI GGCC 9 cut(s) 204, 282, 315, 346, 796, 876, 885, 956, 1129
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 2 cut(s) 83, 104
BspFNI CGCG 1 cut(s) 285
BspHI TCATGA 1 cut(s) 1240
BspLI GGNNCC 6 cut(s) 37, 82, 103, 687, 957, 1290
BspMAI CTGCAG 2 cut(s) 694, 832
BspMI ACCTGC 2 cut(s) 707, 821
BspPI GGATC 3 cut(s) 61, 1128, 1193
BspT107I GGYRCC 2 cut(s) 35, 1288
BspTNI GGTCTC 1 cut(s) 441
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 980
BsrI ACTGG 1 cut(s) 793
BssECI CCNNGG 9 cut(s) 205, 271, 283, 316, 451, 508, 655, 877, 1292
BssMI GATC 4 cut(s) 53, 1120, 1198, 1260
BssT1I CCWWGG 2 cut(s) 655, 1292
Bst2UI CCWGG 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 655
BstC8I GCNNGC 3 cut(s) 798, 1062, 1222
BstDEI CTNAG 2 cut(s) 393, 963
BstDSI CCRYGG 6 cut(s) 205, 271, 283, 316, 451, 508
BstEII GGTNACC 1 cut(s) 650
BstENI CCTNNNNNAGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 15, 340, 812
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 1344
BstKTI GATC 4 cut(s) 56, 1123, 1201, 1263
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 4 cut(s) 53, 1120, 1198, 1260
BstMCI CGRYCG 6 cut(s) 214, 247, 271, 283, 877, 1050
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 1185
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 2 cut(s) 358, 853
BstSFI CTRYAG 3 cut(s) 690, 828, 948
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 682, 704, 1195
BstX2I RGATCY 2 cut(s) 53, 1198
BstYI RGATCY 2 cut(s) 53, 1198
BstZI CGGCCG 2 cut(s) 280, 874
BsuRI GGCC 9 cut(s) 204, 282, 315, 346, 796, 876, 885, 956, 1129
BtgI CCRYGG 6 cut(s) 205, 271, 283, 316, 451, 508
BtgZI GCGATG 2 cut(s) 993, 1286
BtrI CACGTC 1 cut(s) 1403
BtsCI GGATG 3 cut(s) 15, 340, 812
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 3 cut(s) 331, 1130, 1270
BveI ACCTGC 2 cut(s) 707, 821
Cac8I GCNNGC 3 cut(s) 798, 1062, 1222
CciI TCATGA 1 cut(s) 1240
CciNI GCGGCCGC 1 cut(s) 280
CfoI GCGC 1 cut(s) 1344
Cfr13I GGNCC 6 cut(s) 794, 824, 851, 884, 955, 1367
Cfr42I CCGCGG 1 cut(s) 286
Csp6I GTAC 4 cut(s) 411, 676, 739, 1114
CspCI CAANNNNNGTGG 2 cut(s) 1294, 1329
CviAII CATG 3 cut(s) 1182, 1241, 1385
CviQI GTAC 4 cut(s) 411, 676, 739, 1114
DdeI CTNAG 2 cut(s) 393, 963
DpnI GATC 4 cut(s) 55, 1122, 1200, 1262
DpnII GATC 4 cut(s) 53, 1120, 1198, 1260
EaeI YGGCCR 4 cut(s) 280, 313, 874, 1127
EagI CGGCCG 2 cut(s) 280, 874
Eam1104I CTCTTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 655
EciI GGCGGA 2 cut(s) 33, 921
EclXI CGGCCG 2 cut(s) 280, 874
Eco130I CCWWGG 2 cut(s) 655, 1292
Eco31I GGTCTC 1 cut(s) 441
Eco32I GATATC 1 cut(s) 260
Eco47I GGWCC 3 cut(s) 824, 851, 1367
Eco52I CGGCCG 2 cut(s) 280, 874
Eco91I GGTNACC 1 cut(s) 650
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 955
EcoO65I GGTNACC 1 cut(s) 650
EcoRII CCWGG 1 cut(s) 358
EcoRV GATATC 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 655, 1292
EcoT22I ATGCAT 1 cut(s) 1183
ErhI CCWWGG 2 cut(s) 655, 1292
FaeI CATG 3 cut(s) 1185, 1244, 1388
FaqI GGGAC 2 cut(s) 752, 1361
FatI CATG 3 cut(s) 1181, 1240, 1384
FauI CCCGC 1 cut(s) 418
FokI GGATG 3 cut(s) 22, 347, 799
FspBI CTAG 3 cut(s) 57, 1011, 1293
GlaI GCGC 1 cut(s) 1343
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 9 cut(s) 204, 282, 315, 346, 796, 876, 885, 956, 1129
HapII CCGG 3 cut(s) 84, 105, 854
HhaI GCGC 1 cut(s) 1344
Hin1II CATG 3 cut(s) 1185, 1244, 1388
Hin6I GCGC 1 cut(s) 1342
HinP1I GCGC 1 cut(s) 1342
HinfI GANTC 3 cut(s) 1014, 1095, 1157
HpaII CCGG 3 cut(s) 84, 105, 854
HphI GGTGA 6 cut(s) 350, 512, 857, 869, 979, 1187
Hpy166II GTNNAC 3 cut(s) 376, 1367, 1400
Hpy188III TCNNGA 6 cut(s) 20, 84, 105, 1161, 1241, 1358
Hpy8I GTNNAC 3 cut(s) 376, 1367, 1400
HpyAV CCTTC 2 cut(s) 324, 551
HpyCH4IV ACGT 2 cut(s) 1108, 1402
HpyCH4V TGCA 9 cut(s) 692, 716, 764, 830, 863, 938, 1060, 1181, 1211
HpyF3I CTNAG 2 cut(s) 393, 963
HpySE526I ACGT 2 cut(s) 1108, 1402
Hsp92II CATG 3 cut(s) 1185, 1244, 1388
HspAI GCGC 1 cut(s) 1342
Kpn2I TCCGGA 2 cut(s) 83, 104
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 4 cut(s) 53, 1120, 1198, 1260
LmnI GCTCC 5 cut(s) 46, 86, 691, 703, 949
Lsp1109I GCAGC 3 cut(s) 682, 704, 1195
LweI GCATC 3 cut(s) 751, 850, 1168
MaeI CTAG 3 cut(s) 57, 1011, 1293
MaeII ACGT 2 cut(s) 1108, 1402
MaeIII GTNAC 6 cut(s) 188, 398, 650, 725, 1001, 1042
MalI GATC 4 cut(s) 55, 1122, 1200, 1262
MbiI CCGCTC 1 cut(s) 41
MboI GATC 4 cut(s) 53, 1120, 1198, 1260
MboII GAAGA 3 cut(s) 399, 672, 1208
MflI RGATCY 2 cut(s) 53, 1198
MhlI GDGCHC 1 cut(s) 946
MlsI TGGCCA 1 cut(s) 1129
MluCI AATT 5 cut(s) 526, 574, 748, 1143, 1351
MluNI TGGCCA 1 cut(s) 1129
MlyI GAGTC 1 cut(s) 1166
Mox20I TGGCCA 1 cut(s) 1129
Mph1103I ATGCAT 1 cut(s) 1183
MroI TCCGGA 2 cut(s) 83, 104
MroXI GAANNNNTTC 1 cut(s) 1396
MscI TGGCCA 1 cut(s) 1129
MslI CAYNNNNRTG 1 cut(s) 1383
Msp20I TGGCCA 1 cut(s) 1129
MspA1I CMGCKG 3 cut(s) 285, 695, 1220
MspI CCGG 3 cut(s) 84, 105, 854
MspR9I CCNGG 2 cut(s) 360, 855
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 1 cut(s) 285
NciI CCSGG 1 cut(s) 855
NdeII GATC 4 cut(s) 53, 1120, 1198, 1260
NlaIII CATG 3 cut(s) 1185, 1244, 1388
NlaIV GGNNCC 6 cut(s) 37, 82, 103, 687, 957, 1290
NmeAIII GCCGAG 1 cut(s) 902
NmuCI GTSAC 2 cut(s) 1001, 1042
NotI GCGGCCGC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 1183
NspI RCATGY 1 cut(s) 1185
PagI TCATGA 1 cut(s) 1240
PaqCI CACCTGC 2 cut(s) 707, 821
PdmI GAANNNNTTC 1 cut(s) 1396
PfeI GAWTC 2 cut(s) 1014, 1095
PflMI CCANNNNNTGG 3 cut(s) 365, 710, 818
PleI GAGTC 1 cut(s) 1165
PpsI GAGTC 1 cut(s) 1165
PsiI TTATAA 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 358
PspEI GGTNACC 1 cut(s) 650
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 6 cut(s) 37, 82, 103, 687, 957, 1290
PspPI GGNCC 6 cut(s) 794, 824, 851, 884, 955, 1367
PsrI GAACNNNNNNTAC 2 cut(s) 622, 654
PstI CTGCAG 2 cut(s) 694, 832
PsuI RGATCY 2 cut(s) 53, 1198
PvuII CAGCTG 2 cut(s) 695, 1220
RsaI GTAC 4 cut(s) 412, 677, 740, 1115
RsaNI GTAC 4 cut(s) 411, 676, 739, 1114
RseI CAYNNNNRTG 1 cut(s) 1383
SacII CCGCGG 1 cut(s) 286
Sau3AI GATC 4 cut(s) 53, 1120, 1198, 1260
Sau96I GGNCC 6 cut(s) 794, 824, 851, 884, 955, 1367
SbfI CCTGCAGG 1 cut(s) 832
SchI GAGTC 1 cut(s) 1166
ScrFI CCNGG 2 cut(s) 360, 855
SdaI CCTGCAGG 1 cut(s) 832
SduI GDGCHC 1 cut(s) 946
SfaNI GCATC 3 cut(s) 751, 850, 1168
SfcI CTRYAG 3 cut(s) 690, 828, 948
SfiI GGCCNNNNNGGCC 1 cut(s) 882
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 3 cut(s) 824, 851, 1367
SmiMI CAYNNNNRTG 1 cut(s) 1383
Sse8387I CCTGCAGG 1 cut(s) 832
Sse9I AATT 5 cut(s) 526, 574, 748, 1143, 1351
SspMI CTAG 3 cut(s) 57, 1011, 1293
StyD4I CCNGG 2 cut(s) 358, 853
StyI CCWWGG 2 cut(s) 655, 1292
TaiI ACGT 2 cut(s) 1111, 1405
TaqI TCGA 6 cut(s) 214, 247, 541, 925, 1050, 1357
TasI AATT 5 cut(s) 526, 574, 748, 1143, 1351
TfiI GAWTC 2 cut(s) 1014, 1095
TscAI CASTG 3 cut(s) 331, 1130, 1270
TseFI GTSAC 2 cut(s) 1001, 1042
TseI GCWGC 3 cut(s) 692, 695, 1208
Tsp45I GTSAC 2 cut(s) 1001, 1042
TspDTI ATGAA 4 cut(s) 570, 792, 1068, 1209
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 331, 1130, 1270
Van91I CCANNNNNTGG 3 cut(s) 365, 710, 818
VpaK11BI GGWCC 3 cut(s) 824, 851, 1367
XagI CCTNNNNNAGG 1 cut(s) 357
XapI RAATTY 1 cut(s) 1143
XceI RCATGY 1 cut(s) 1185
XmaJI CCTAGG 1 cut(s) 1292
XmnI GAANNNNTTC 1 cut(s) 1396
XspI CTAG 3 cut(s) 57, 1011, 1293
Zsp2I ATGCAT 1 cut(s) 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.