Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007365

Physical Location & Seq

Genomic Coordinates Reverse (-)

4102689 .. 4105126

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05310.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGCTGGAATCTACGGTCAAGGGGGCGATGGTGCCCCTCCGACATACGGATCTAGCGGCGGCGGTGGCTATGGGGGTTCTGGCGGATATGGAGGCGGTTCTGGTGGTTATGGAGGTGGTGGTGGAGGCGGGAGCTATGGTGGAAGCGGTGGTGGTGGATACGGAGGTAAGGGCGGCGATGGAGGTGGTTACGGTGGTGGACGCGGCGGTGGCGGTGGTGGCCGAGGTGGAGGATATCAAGGCGACCGTGGTGGTGGAGGCAGAGGTGGCGACCGTGGTGGTGGCGGCAGAGGCGGCCGCGGTGGCAGTGGAAGAGATGGTGATTGGCTGTGTCCTAATCCAGGCTGTGGGAATTCAAACTTTGCAAGAAGAGTTGAGTGTAATAAGTGTGGCACGCCCTCTCCTTCGGGTGCCGGTGGTGATCGTGGCAGTGGTGGTGGTTATAACAGAGGAGGAAGTGGTGGGGGCTACGGTGGTGGTAACCGTGGTGGTAGGGGTGGTAATTATGATGGGGGTCGAAGTGGTAACTATGAAGGAGGTAAAAGTAGCAGTTATGATGGAGGCAGAGGCAGTAGTTATGACAGTAGAGGCGGTGGTGGTAGTAGAGGTGGTTCTTATGGTGGTAGTCAAGGAAGAGATGATGGTGGGTATGGTCAGGTTCCTCCAAGTGCTCCACCGTCCTATGGTGCAGCTGGAGGCAATTACGCACCATCTTACAATGCTAGTTATGGAACAGATGCAGTTCCGCCTCCTACAAGCTATACTGGTGGACCTGGATCATATCCCCCATCTTATGGTGGTCCTGCGGGTGGTTATGGTGGTGATGGTCTAGGTGATGCAAGGGGTGGTGGGCGTGGGGGCCCTCCAGCTAAATATGATGGTGGATACAGTGCTGGTGGTCGTGGTGGATATGGCAGTTCTGCTACGGAAGCCCCAGCTAAGGTGAAGCAGTGCGACCAGAATTGTGATGATACTTGTGACAATGCTAGAATCTACATATCAAACTTACCACCAGATGTTACCGTTGACGAACTTCAGCAGCTCTTTGGAGGCATTGGACAAGTGGGAAGAATCAAGCAGAAACGTGGCTATAAGGATCAATGGCCATATAATATCAAAATATACACAGATGAGTCTGGAAAAAACAAAGGCGACGCATGTTTAGCCTATGAAGATCCCTCTGCTGCACATTCAGCCGGTGGATTTTACAATGATTATGACTTAAGGGGCTATAAGATCAGTGTTGGAATGGCGGAGAGATCAGCTCCAAGGCCTTCGTTTGAACAAGGTGGTGGTGGCGGTAGAGGTGGATATGGTGGCGGTGACAGGCGCAACAGTTATAGAGACGGTGGAGCTGATAGACATCAGCACGGCGGAAACCGTTCGCGTCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

RRM_1 zf-RanBP

Protein Analysis

466

Amino Acids

45.07

Weight (kDa)

8.95

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58470 AT5G58470
fragaria_vesca	FvH4_3g39510 FvH4_3g39510 FvH4_3g39510 FvH4_3g39510
malus_domestica	MD03G1060300.v1.1 MD11G1063400.v1.1
prunus_persica	Prupe.6G050700_v2.0.a1 Prupe.6G050700_v2.0.a1
pyrus_communis	pycom03g04840 pycom11g05310
rosa_chinensis	RchiOBHm_Chr5g0071281
rosa_laevigata	RLG00000036198
rosa_multiflora	Rmu_sc0006990.1_g000011
rosa_roxburghii	Rroxscaffold_1G00009860
rosa_rugosa	Rorug05G0411100 Rorug05G0411100 Rorug05G0411100 Rorug05G0411100
rosa_samantha	Rh5AG467300 Rh5BG485800 Rh5CG510200 Rh5DG497000
rosa_wichuraiana	Rw5G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AccB1I	GGYRCC	2 cut(s)	32, 410
AccB7I	CCANNNNNTGG	2 cut(s)	347, 794
AccII	CGCG	3 cut(s)	204, 300, 1387
AclWI	GGATC	4 cut(s)	58, 784, 1104, 1169
AcoI	YGGCCR	3 cut(s)	220, 295, 1103
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	1019
AfiI	CCNNNNNNNGG	7 cut(s)	47, 341, 347, 683, 794, 809, 940
AflII	CTTAAG	1 cut(s)	1222
AgsI	TTSAA	2 cut(s)	357, 1283
AjnI	CCWGG	2 cut(s)	340, 772
AluBI	AGCT	8 cut(s)	135, 692, 759, 869, 938, 1042, 1265, 1355
AluI	AGCT	8 cut(s)	135, 692, 759, 869, 938, 1042, 1265, 1355
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	1 cut(s)	1338
AlwI	GGATC	4 cut(s)	58, 784, 1104, 1169
AoxI	GGCC	5 cut(s)	220, 295, 859, 1103, 1271
ApaI	GGGCCC	1 cut(s)	863
ApeKI	GCWGC	3 cut(s)	689, 1039, 1184
ApoI	RAATTY	1 cut(s)	352
Asp700I	GAANNNNTTC	1 cut(s)	1381
AspLEI	GCGC	1 cut(s)	1332
AspS9I	GGNCC	4 cut(s)	770, 800, 859, 860
AsuHPI	GGTGA	6 cut(s)	332, 431, 833, 845, 955, 1334
AvaII	GGWCC	2 cut(s)	770, 800
BaeGI	GKGCMC	2 cut(s)	37, 863
BaeI	ACNNNNGTAYC	2 cut(s)	151, 184
BalI	TGGCCA	1 cut(s)	1105
BanI	GGYRCC	2 cut(s)	32, 410
BanII	GRGCYC	1 cut(s)	863
Bbv12I	GWGCWC	1 cut(s)	673
BbvI	GCAGC	3 cut(s)	701, 1051, 1171
BceAI	ACGGC	1 cut(s)	1387
BciT130I	CCWGG	2 cut(s)	342, 774
BciVI	GTATCC	2 cut(s)	152, 878
BcoDI	GTCTC	1 cut(s)	1338
BfaI	CTAG	4 cut(s)	54, 723, 830, 987
BfrI	CTTAAG	1 cut(s)	1222
BfuI	GTATCC	2 cut(s)	152, 878
BglI	GCCNNNNNGGC	1 cut(s)	303
Bme1390I	CCNGG	2 cut(s)	342, 774
Bme18I	GGWCC	2 cut(s)	770, 800
BmgT120I	GGNCC	4 cut(s)	770, 800, 859, 860
BmiI	GGNNCC	5 cut(s)	34, 412, 660, 860, 861
BmrFI	CCNGG	2 cut(s)	342, 774
BmsI	GCATC	2 cut(s)	727, 826
BplI	GAGNNNNNCTC	2 cut(s)	1249, 1281
BpmI	CTGGAG	2 cut(s)	714, 849
Bpu10I	CCTNAGC	1 cut(s)	939
BsaBI	GATNNNNATC	1 cut(s)	1362
BsaJI	CCNNGG	6 cut(s)	223, 247, 274, 298, 484, 1268
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 385, 415
Bsc4I	CCNNNNNNNGG	7 cut(s)	47, 341, 347, 683, 794, 809, 940
Bse118I	RCCGGY	2 cut(s)	413, 1196
Bse1I	ACTGG	1 cut(s)	769
Bse8I	GATNNNNATC	1 cut(s)	1362
BseBI	CCWGG	2 cut(s)	342, 774
BseDI	CCNNGG	6 cut(s)	223, 247, 274, 298, 484, 1268
BseJI	GATNNNNATC	1 cut(s)	1362
BseLI	CCNNNNNNNGG	7 cut(s)	47, 341, 347, 683, 794, 809, 940
BseNI	ACTGG	1 cut(s)	769
BseRI	GAGGAG	1 cut(s)	465
BseSI	GKGCMC	2 cut(s)	37, 863
BseX3I	CGGCCG	1 cut(s)	295
BseXI	GCAGC	3 cut(s)	701, 1051, 1171
BseYI	CCCAGC	1 cut(s)	934
BsgI	GTGCAG	2 cut(s)	708, 1170
Bsh1236I	CGCG	3 cut(s)	204, 300, 1387
Bsh1285I	CGRYCG	3 cut(s)	247, 274, 298
BshFI	GGCC	5 cut(s)	222, 297, 861, 1105, 1273
BshNI	GGYRCC	2 cut(s)	32, 410
BsiEI	CGRYCG	3 cut(s)	247, 274, 298
BsiHKAI	GWGCWC	1 cut(s)	673
BsiSI	CCGG	2 cut(s)	414, 1197
BslI	CCNNNNNNNGG	7 cut(s)	47, 341, 347, 683, 794, 809, 940
BsmAI	GTCTC	1 cut(s)	1338
BsmBI	CGTCTC	1 cut(s)	1338
BsnI	GGCC	5 cut(s)	222, 297, 861, 1105, 1273
Bsp120I	GGGCCC	1 cut(s)	859
Bsp1286I	GDGCHC	3 cut(s)	37, 673, 863
Bsp143I	GATC	7 cut(s)	50, 421, 776, 1096, 1174, 1236, 1259
BspANI	GGCC	5 cut(s)	222, 297, 861, 1105, 1273
BspFNI	CGCG	3 cut(s)	204, 300, 1387
BspLI	GGNNCC	5 cut(s)	34, 412, 660, 860, 861
BspPI	GGATC	4 cut(s)	58, 784, 1104, 1169
BspT107I	GGYRCC	2 cut(s)	32, 410
BspTI	CTTAAG	1 cut(s)	1222
BsrFI	RCCGGY	2 cut(s)	413, 1196
BsrI	ACTGG	1 cut(s)	769
BssAI	RCCGGY	2 cut(s)	413, 1196
BssECI	CCNNGG	6 cut(s)	223, 247, 274, 298, 484, 1268
BssMI	GATC	7 cut(s)	50, 421, 776, 1096, 1174, 1236, 1259
BssT1I	CCWWGG	1 cut(s)	1268
Bst2UI	CCWGG	2 cut(s)	342, 774
Bst6I	CTCTTC	3 cut(s)	307, 364, 628
BstAFI	CTTAAG	1 cut(s)	1222
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	939
BstDSI	CCRYGG	4 cut(s)	247, 274, 298, 484
BstEII	GGTNACC	1 cut(s)	479
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstFNI	CGCG	3 cut(s)	204, 300, 1387
BstHHI	GCGC	1 cut(s)	1332
BstKTI	GATC	7 cut(s)	53, 424, 779, 1099, 1177, 1239, 1262
BstMAI	GTCTC	1 cut(s)	1338
BstMBI	GATC	7 cut(s)	50, 421, 776, 1096, 1174, 1236, 1259
BstMCI	CGRYCG	3 cut(s)	247, 274, 298
BstNI	CCWGG	2 cut(s)	342, 774
BstNSI	RCATGY	1 cut(s)	1161
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	340, 772
BstSLI	GKGCMC	2 cut(s)	37, 863
BstUI	CGCG	3 cut(s)	204, 300, 1387
BstV1I	GCAGC	3 cut(s)	701, 1051, 1171
BstX2I	RGATCY	2 cut(s)	50, 1174
BstYI	RGATCY	2 cut(s)	50, 1174
BstZI	CGGCCG	1 cut(s)	295
BsuI	GTATCC	2 cut(s)	152, 878
BsuRI	GGCC	5 cut(s)	222, 297, 861, 1105, 1273
BtgI	CCRYGG	4 cut(s)	247, 274, 298, 484
BtgZI	GCGATG	2 cut(s)	42, 192
BtsI	GCAGTG	3 cut(s)	313, 436, 956
BtsIMutI	CAGTG	5 cut(s)	313, 436, 895, 956, 1246
Cac8I	GCNNGC	1 cut(s)	395
CciNI	GCGGCCGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	1332
Cfr10I	RCCGGY	2 cut(s)	413, 1196
Cfr13I	GGNCC	4 cut(s)	770, 800, 859, 860
Cfr42I	CCGCGG	1 cut(s)	301
CseI	GACGC	3 cut(s)	210, 1163, 1376
CviAII	CATG	1 cut(s)	1158
DdeI	CTNAG	1 cut(s)	939
DpnI	GATC	7 cut(s)	52, 423, 778, 1098, 1176, 1238, 1261
DpnII	GATC	7 cut(s)	50, 421, 776, 1096, 1174, 1236, 1259
EaeI	YGGCCR	3 cut(s)	220, 295, 1103
EagI	CGGCCG	1 cut(s)	295
Eam1104I	CTCTTC	3 cut(s)	307, 364, 628
EarI	CTCTTC	3 cut(s)	307, 364, 628
EciI	GGCGGA	4 cut(s)	99, 735, 1268, 1389
EclXI	CGGCCG	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	1268
Eco147I	AGGCCT	1 cut(s)	1273
Eco24I	GRGCYC	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	770, 800
Eco52I	CGGCCG	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	1019
Eco91I	GGTNACC	1 cut(s)	479
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoO109I	RGGNCCY	2 cut(s)	859, 860
EcoO65I	GGTNACC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	340, 772
EcoRV	GATATC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	1268
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	1 cut(s)	1268
Esp3I	CGTCTC	1 cut(s)	1338
FaeI	CATG	1 cut(s)	1161
FatI	CATG	1 cut(s)	1157
FauI	CCCGC	2 cut(s)	122, 799
FriOI	GRGCYC	1 cut(s)	863
FspBI	CTAG	4 cut(s)	54, 723, 830, 987
GlaI	GCGC	1 cut(s)	1331
GsaI	CCCAGC	1 cut(s)	938
GsuI	CTGGAG	2 cut(s)	714, 849
HaeIII	GGCC	5 cut(s)	222, 297, 861, 1105, 1273
HapII	CCGG	2 cut(s)	414, 1197
HgaI	GACGC	3 cut(s)	210, 1163, 1376
HhaI	GCGC	1 cut(s)	1332
Hin1II	CATG	1 cut(s)	1161
Hin6I	GCGC	1 cut(s)	1330
HinP1I	GCGC	1 cut(s)	1330
HincII	GTYRAC	1 cut(s)	1027
HindII	GTYRAC	1 cut(s)	1027
HinfI	GANTC	4 cut(s)	9, 990, 1071, 1133
HpaII	CCGG	2 cut(s)	414, 1197
HphI	GGTGA	6 cut(s)	332, 431, 833, 845, 955, 1334
Hpy166II	GTNNAC	3 cut(s)	200, 770, 1027
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	1137
Hpy8I	GTNNAC	3 cut(s)	200, 770, 1027
Hpy99I	CGWCG	1 cut(s)	1157
HpyAV	CCTTC	3 cut(s)	414, 527, 1284
HpyCH4IV	ACGT	1 cut(s)	1084
HpyCH4V	TGCA	5 cut(s)	365, 689, 740, 839, 1187
HpyF3I	CTNAG	1 cut(s)	939
HpySE526I	ACGT	1 cut(s)	1084
Hsp92II	CATG	1 cut(s)	1161
HspAI	GCGC	1 cut(s)	1330
KspI	CCGCGG	1 cut(s)	301
Kzo9I	GATC	7 cut(s)	50, 421, 776, 1096, 1174, 1236, 1259
LmnI	GCTCC	4 cut(s)	132, 676, 1270, 1352
Lsp1109I	GCAGC	3 cut(s)	701, 1051, 1171
LweI	GCATC	2 cut(s)	727, 826
MaeI	CTAG	4 cut(s)	54, 723, 830, 987
MaeII	ACGT	1 cut(s)	1084
MaeIII	GTNAC	6 cut(s)	188, 479, 524, 977, 1018, 1322
MalI	GATC	7 cut(s)	52, 423, 778, 1098, 1176, 1238, 1261
MboI	GATC	7 cut(s)	50, 421, 776, 1096, 1174, 1236, 1259
MboII	GAAGA	5 cut(s)	324, 381, 645, 1080, 1184
MflI	RGATCY	2 cut(s)	50, 1174
MhlI	GDGCHC	3 cut(s)	37, 673, 863
MlsI	TGGCCA	1 cut(s)	1105
MluCI	AATT	4 cut(s)	352, 502, 700, 961
MluNI	TGGCCA	1 cut(s)	1105
MlyI	GAGTC	1 cut(s)	1142
MmeI	TCCRAC	2 cut(s)	65, 1225
Mox20I	TGGCCA	1 cut(s)	1105
MroXI	GAANNNNTTC	1 cut(s)	1381
MscI	TGGCCA	1 cut(s)	1105
MseI	TTAA	1 cut(s)	1223
Msp20I	TGGCCA	1 cut(s)	1105
MspA1I	CMGCKG	2 cut(s)	300, 692
MspCI	CTTAAG	1 cut(s)	1222
MspI	CCGG	2 cut(s)	414, 1197
MspR9I	CCNGG	2 cut(s)	342, 774
MvaI	CCWGG	2 cut(s)	342, 774
MvnI	CGCG	3 cut(s)	204, 300, 1387
NdeII	GATC	7 cut(s)	50, 421, 776, 1096, 1174, 1236, 1259
NlaIII	CATG	1 cut(s)	1161
NlaIV	GGNNCC	5 cut(s)	34, 412, 660, 860, 861
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	2 cut(s)	977, 1322
NotI	GCGGCCGC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	1161
PceI	AGGCCT	1 cut(s)	1273
PdmI	GAANNNNTTC	1 cut(s)	1381
PfeI	GAWTC	3 cut(s)	9, 990, 1071
PflMI	CCANNNNNTGG	2 cut(s)	347, 794
PleI	GAGTC	1 cut(s)	1141
PpsI	GAGTC	1 cut(s)	1141
PsiI	TTATAA	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	340, 772
PspEI	GGTNACC	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	934
PspGI	CCWGG	2 cut(s)	340, 772
PspN4I	GGNNCC	5 cut(s)	34, 412, 660, 860, 861
PspOMI	GGGCCC	1 cut(s)	859
PspPI	GGNCC	4 cut(s)	770, 800, 859, 860
PsrI	GAACNNNNNNTAC	2 cut(s)	595, 627
PsuI	RGATCY	2 cut(s)	50, 1174
PvuII	CAGCTG	1 cut(s)	692
SacII	CCGCGG	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	1223
Sau3AI	GATC	7 cut(s)	50, 421, 776, 1096, 1174, 1236, 1259
Sau96I	GGNCC	4 cut(s)	770, 800, 859, 860
SchI	GAGTC	1 cut(s)	1142
ScrFI	CCNGG	2 cut(s)	342, 774
SduI	GDGCHC	3 cut(s)	37, 673, 863
SfaNI	GCATC	2 cut(s)	727, 826
Sfr303I	CCGCGG	1 cut(s)	301
SgrBI	CCGCGG	1 cut(s)	301
SinI	GGWCC	2 cut(s)	770, 800
SmlI	CTYRAG	1 cut(s)	1222
SmoI	CTYRAG	1 cut(s)	1222
Sse9I	AATT	4 cut(s)	352, 502, 700, 961
SseBI	AGGCCT	1 cut(s)	1273
SspMI	CTAG	4 cut(s)	54, 723, 830, 987
StuI	AGGCCT	1 cut(s)	1273
StyD4I	CCNGG	2 cut(s)	340, 772
StyI	CCWWGG	1 cut(s)	1268
TaiI	ACGT	1 cut(s)	1087
TaqI	TCGA	1 cut(s)	517
TasI	AATT	4 cut(s)	352, 502, 700, 961
TauI	GCSGC	7 cut(s)	60, 63, 177, 207, 288, 297, 300
TfiI	GAWTC	3 cut(s)	9, 990, 1071
Tru1I	TTAA	1 cut(s)	1223
Tru9I	TTAA	1 cut(s)	1223
TscAI	CASTG	5 cut(s)	313, 436, 895, 956, 1246
TseFI	GTSAC	2 cut(s)	977, 1322
TseI	GCWGC	3 cut(s)	689, 1039, 1184
Tsp45I	GTSAC	2 cut(s)	977, 1322
TspDTI	ATGAA	2 cut(s)	546, 1185
TspGWI	ACGGA	3 cut(s)	63, 177, 941
TspRI	CASTG	5 cut(s)	313, 436, 895, 956, 1246
Van91I	CCANNNNNTGG	2 cut(s)	347, 794
Vha464I	CTTAAG	1 cut(s)	1222
VpaK11BI	GGWCC	2 cut(s)	770, 800
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	1161
XmnI	GAANNNNTTC	1 cut(s)	1381
XspI	CTAG	4 cut(s)	54, 723, 830, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.