Rh5CG510200

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007365
Physical Location & Seq
Forward (+)
71318488 .. 71320912
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG510200.1

Sequence Viewer

Length: 1410 bp
ATGGCTGGGATGTATGGTCAGGAGGGCGGTGGTGGTGCGGCTCCGCCGTATGGATCTAGCGGCGGTGGTGGCTACGGTGGCTCCGGAGGGTATGGAGGCGGTTCCGGAGGTTACGGAGGAGGCGGTGGTGGTGGAGGCTACGGAGGAGGAGGTGGTGGATATGGAGGTAAAGGCGGCGATAGCGGTGGTTACGGTGGTGGAGGCCGTGGTGGTCGAGGTGGAGGAGGTTATGGTGGCGGTGGCGGTCGAGGTGGAGGATATCAAGGCGACCGTGGTGGCGGCCGCGGAGGTGGCGGCGGCGGCAGAGGTGGCCGTGGTGGCAGTGGAAGGGATGGTGATTGGCCTTGCCCTAATCCAGGCTGTGGGAATGTGAACTTTGCGAGAAGAACTGAGTGTAACAAGTGTGGTACGCCCTCTCCTGCGGGTGCTGGTGGCGGTGGGGGAGACCGTGGTGGTGGAGGTAGTTATAATAGAGGTGGAAGTGGTGGGGGATATGGTGATAACCGTGGTGGCAGAAGTGGTAATTATGATGGGGGTCGAAGTGGCAACTATGAAGGAGGTAAAGGTAGCAATTATGATGGAGGCAGAGGGGGTGGTTTTGATAGTAGAGGTGGAGGAGGTGGGAGTAGAGGTGGTTCTTATGGTGGTAACCAAGGAAGAGATGATGGTGGGTACGGTCAGGCTCCTGCAGCTGCTCCTCCATCTTATGGTGCAGGTGGCAGTTACCCACCATCGTACAATGCTAATTATGGAACAGATGCAGTCCCTCCTCCTACAAGCTATACTGGTGGGCCTGCTTCATATCCCCCATCCTATGGTGGTCCTGCAGGTGGTTATGGTGGTGATGGTCCGGGTGATGCAAGGAGTGGCGGCCGAGGTGGCCCTCCTGCTAAATACGATGGTGGATATGGTGGTGGTGGTCGAGGTGGTTATGGAAGTGCTCCTACAGAGGCCCCTGCTAAGGTGAAGCAATGTGATGAGAACTGTGATGATACTTGTGACAATGCTAGAATCTACATTTCAAATCTGCCACCTGATGTCACGGTCGATGAACTGCAAGCTCTTTTTGGAGGCATTGGACAAGTTGGGAGAATCAAGCAGAAACGTGGGTACAAGGATCAGTGGCCATATAACATCAAAATTTACACAGATGAGTCGGGAAAGAACAAAGGTGATGCATGTTTAGCCTATGAAGATCCAAATGCTGCACATTCAGCTGGCAGTTTTTACAACGGTCATGACATAAGGGGCTATAAGATCAGTGTTGCGATGGCAGAGAGGTCGGCACCTAGGGCTTACGACAATGGTGGTGGTAGAGGTGGTTATGGGGGCGGTGGGCGCAGGGACAATTATCGAGATGGTGGACCTGACAGACATCAGCATGGTGGAAACCGTTCACGTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
RRM_1 zf-RanBP

Protein Analysis

469

Amino Acids

45.14

Weight (kDa)

8.95

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 110 - 140 1.5e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AarI CACCTGC 2 cut(s) 704, 818
Acc36I ACCTGC 2 cut(s) 704, 818
AccB1I GGYRCC 1 cut(s) 1285
AccB7I CCANNNNNTGG 3 cut(s) 362, 707, 815
AccII CGCG 1 cut(s) 285
AccIII TCCGGA 2 cut(s) 83, 104
AclWI GGATC 3 cut(s) 61, 1125, 1190
AcoI YGGCCR 4 cut(s) 280, 310, 871, 1124
AcsI RAATTY 1 cut(s) 1140
AfaI GTAC 4 cut(s) 409, 674, 737, 1112
AfiI CCNNNNNNNGG 7 cut(s) 50, 356, 362, 707, 815, 830, 961
AgsI TTSAA 1 cut(s) 1023
AjiI CACGTC 1 cut(s) 1400
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 4 cut(s) 692, 780, 1061, 1217
AluI AGCT 4 cut(s) 692, 780, 1061, 1217
Alw21I GWGCWC 1 cut(s) 943
Alw26I GTCTC 1 cut(s) 438
AlwI GGATC 3 cut(s) 61, 1125, 1190
Aor13HI TCCGGA 2 cut(s) 83, 104
AoxI GGCC 9 cut(s) 202, 280, 310, 341, 791, 871, 880, 951, 1124
ApeKI GCWGC 3 cut(s) 689, 692, 1205
ApoI RAATTY 1 cut(s) 1140
Asp700I GAANNNNTTC 1 cut(s) 1393
AspA2I CCTAGG 1 cut(s) 1289
AspLEI GCGC 1 cut(s) 1341
AspS9I GGNCC 6 cut(s) 791, 821, 848, 881, 952, 1364
AsuC2I CCSGG 1 cut(s) 852
AsuHPI GGTGA 6 cut(s) 347, 509, 854, 866, 976, 1184
AvaII GGWCC 3 cut(s) 821, 848, 1364
AvrII CCTAGG 1 cut(s) 1289
BalI TGGCCA 1 cut(s) 1126
BanI GGYRCC 1 cut(s) 1285
BarI GAAGNNNNNNTAC 2 cut(s) 928, 960
Bbv12I GWGCWC 1 cut(s) 943
BbvI GCAGC 3 cut(s) 679, 701, 1192
BceAI ACGGC 3 cut(s) 31, 189, 297
BcgI CGANNNNNNTGC 2 cut(s) 1263, 1297
BciT130I CCWGG 1 cut(s) 357
BcnI CCSGG 1 cut(s) 852
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 3 cut(s) 57, 1008, 1290
BfmI CTRYAG 3 cut(s) 687, 825, 945
BfuAI ACCTGC 2 cut(s) 704, 818
BglI GCCNNNNNGGC 2 cut(s) 318, 879
BlnI CCTAGG 1 cut(s) 1289
Bme1390I CCNGG 2 cut(s) 357, 852
Bme18I GGWCC 3 cut(s) 821, 848, 1364
BmgBI CACGTC 1 cut(s) 1400
BmgT120I GGNCC 6 cut(s) 791, 821, 848, 881, 952, 1364
BmiI GGNNCC 6 cut(s) 42, 82, 103, 684, 954, 1287
BmrFI CCNGG 2 cut(s) 357, 852
BmsI GCATC 3 cut(s) 748, 847, 1165
Bpu10I CCTNAGC 1 cut(s) 960
BpuMI CCSGG 1 cut(s) 852
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 9 cut(s) 205, 271, 283, 313, 448, 505, 652, 874, 1289
BsaWI WCCGGW 2 cut(s) 83, 104
BsaXI ACNNNNNCTCC 6 cut(s) 65, 95, 400, 430, 616, 646
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 356, 362, 707, 815, 830, 961
Bse1I ACTGG 1 cut(s) 790
Bse3DI GCAATG 1 cut(s) 977
BseAI TCCGGA 2 cut(s) 83, 104
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 9 cut(s) 205, 271, 283, 313, 448, 505, 652, 874, 1289
BseGI GGATG 3 cut(s) 15, 337, 809
BseLI CCNNNNNNNGG 7 cut(s) 50, 356, 362, 707, 815, 830, 961
BseMI GCAATG 1 cut(s) 977
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 790
BseRI GAGGAG 7 cut(s) 132, 159, 162, 237, 630, 687, 759
BseX3I CGGCCG 2 cut(s) 280, 871
BseXI GCAGC 3 cut(s) 679, 701, 1192
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 2 cut(s) 732, 1191
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 5 cut(s) 247, 271, 283, 874, 1047
BshFI GGCC 9 cut(s) 204, 282, 312, 343, 793, 873, 882, 953, 1126
BshNI GGYRCC 1 cut(s) 1285
BsiEI CGRYCG 5 cut(s) 247, 271, 283, 874, 1047
BsiHKAI GWGCWC 1 cut(s) 943
BsiSI CCGG 3 cut(s) 84, 105, 851
BslFI GGGAC 2 cut(s) 749, 1358
BslI CCNNNNNNNGG 7 cut(s) 50, 356, 362, 707, 815, 830, 961
BsmAI GTCTC 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 749, 1358
BsnI GGCC 9 cut(s) 204, 282, 312, 343, 793, 873, 882, 953, 1126
Bso31I GGTCTC 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 943
Bsp13I TCCGGA 2 cut(s) 83, 104
Bsp143I GATC 4 cut(s) 53, 1117, 1195, 1257
BspANI GGCC 9 cut(s) 204, 282, 312, 343, 793, 873, 882, 953, 1126
BspCNI CTCAG 1 cut(s) 382
BspEI TCCGGA 2 cut(s) 83, 104
BspFNI CGCG 1 cut(s) 285
BspHI TCATGA 1 cut(s) 1237
BspLI GGNNCC 6 cut(s) 42, 82, 103, 684, 954, 1287
BspMAI CTGCAG 2 cut(s) 691, 829
BspMI ACCTGC 2 cut(s) 704, 818
BspPI GGATC 3 cut(s) 61, 1125, 1190
BspT107I GGYRCC 1 cut(s) 1285
BspTNI GGTCTC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 977
BsrI ACTGG 1 cut(s) 790
BssECI CCNNGG 9 cut(s) 205, 271, 283, 313, 448, 505, 652, 874, 1289
BssMI GATC 4 cut(s) 53, 1117, 1195, 1257
BssT1I CCWWGG 2 cut(s) 652, 1289
Bst2UI CCWGG 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 652
BstC8I GCNNGC 3 cut(s) 795, 1059, 1219
BstDEI CTNAG 2 cut(s) 390, 960
BstDSI CCRYGG 6 cut(s) 205, 271, 283, 313, 448, 505
BstEII GGTNACC 1 cut(s) 647
BstENI CCTNNNNNAGG 1 cut(s) 354
BstF5I GGATG 3 cut(s) 15, 337, 809
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 1341
BstKTI GATC 4 cut(s) 56, 1120, 1198, 1260
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 4 cut(s) 53, 1117, 1195, 1257
BstMCI CGRYCG 5 cut(s) 247, 271, 283, 874, 1047
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 1182
BstPI GGTNACC 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 355, 850
BstSFI CTRYAG 3 cut(s) 687, 825, 945
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 679, 701, 1192
BstX2I RGATCY 2 cut(s) 53, 1195
BstYI RGATCY 2 cut(s) 53, 1195
BstZI CGGCCG 2 cut(s) 280, 871
BsuRI GGCC 9 cut(s) 204, 282, 312, 343, 793, 873, 882, 953, 1126
BtgI CCRYGG 6 cut(s) 205, 271, 283, 313, 448, 505
BtgZI GCGATG 1 cut(s) 1283
BtrI CACGTC 1 cut(s) 1400
BtsCI GGATG 3 cut(s) 15, 337, 809
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 328, 1127, 1267
BveI ACCTGC 2 cut(s) 704, 818
Cac8I GCNNGC 3 cut(s) 795, 1059, 1219
CciI TCATGA 1 cut(s) 1237
CciNI GCGGCCGC 1 cut(s) 280
CfoI GCGC 1 cut(s) 1341
Cfr13I GGNCC 6 cut(s) 791, 821, 848, 881, 952, 1364
Cfr42I CCGCGG 1 cut(s) 286
Csp6I GTAC 4 cut(s) 408, 673, 736, 1111
CspCI CAANNNNNGTGG 2 cut(s) 1291, 1326
CviAII CATG 3 cut(s) 1179, 1238, 1382
CviQI GTAC 4 cut(s) 408, 673, 736, 1111
DdeI CTNAG 2 cut(s) 390, 960
DpnI GATC 4 cut(s) 55, 1119, 1197, 1259
DpnII GATC 4 cut(s) 53, 1117, 1195, 1257
EaeI YGGCCR 4 cut(s) 280, 310, 871, 1124
EagI CGGCCG 2 cut(s) 280, 871
Eam1104I CTCTTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 652
EciI GGCGGA 1 cut(s) 33
EclXI CGGCCG 2 cut(s) 280, 871
Eco130I CCWWGG 2 cut(s) 652, 1289
Eco31I GGTCTC 1 cut(s) 438
Eco32I GATATC 1 cut(s) 260
Eco47I GGWCC 3 cut(s) 821, 848, 1364
Eco52I CGGCCG 2 cut(s) 280, 871
Eco91I GGTNACC 1 cut(s) 647
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 952
EcoO65I GGTNACC 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 355
EcoRV GATATC 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 652, 1289
EcoT22I ATGCAT 1 cut(s) 1180
ErhI CCWWGG 2 cut(s) 652, 1289
FaeI CATG 3 cut(s) 1182, 1241, 1385
FaqI GGGAC 2 cut(s) 749, 1358
FatI CATG 3 cut(s) 1178, 1237, 1381
FauI CCCGC 1 cut(s) 415
FokI GGATG 3 cut(s) 22, 344, 796
FspBI CTAG 3 cut(s) 57, 1008, 1290
GlaI GCGC 1 cut(s) 1340
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 9 cut(s) 204, 282, 312, 343, 793, 873, 882, 953, 1126
HapII CCGG 3 cut(s) 84, 105, 851
HhaI GCGC 1 cut(s) 1341
Hin1II CATG 3 cut(s) 1182, 1241, 1385
Hin6I GCGC 1 cut(s) 1339
HinP1I GCGC 1 cut(s) 1339
HinfI GANTC 3 cut(s) 1011, 1092, 1154
HpaII CCGG 3 cut(s) 84, 105, 851
HphI GGTGA 6 cut(s) 347, 509, 854, 866, 976, 1184
Hpy166II GTNNAC 3 cut(s) 373, 1364, 1397
Hpy188III TCNNGA 6 cut(s) 20, 84, 105, 1158, 1238, 1355
Hpy8I GTNNAC 3 cut(s) 373, 1364, 1397
HpyAV CCTTC 2 cut(s) 321, 548
HpyCH4IV ACGT 2 cut(s) 1105, 1399
HpyCH4V TGCA 8 cut(s) 689, 713, 761, 827, 860, 1057, 1178, 1208
HpyF3I CTNAG 2 cut(s) 390, 960
HpySE526I ACGT 2 cut(s) 1105, 1399
Hsp92II CATG 3 cut(s) 1182, 1241, 1385
HspAI GCGC 1 cut(s) 1339
Kpn2I TCCGGA 2 cut(s) 83, 104
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 4 cut(s) 53, 1117, 1195, 1257
LmnI GCTCC 5 cut(s) 46, 86, 688, 700, 946
Lsp1109I GCAGC 3 cut(s) 679, 701, 1192
LweI GCATC 3 cut(s) 748, 847, 1165
MaeI CTAG 3 cut(s) 57, 1008, 1290
MaeII ACGT 2 cut(s) 1105, 1399
MaeIII GTNAC 7 cut(s) 110, 188, 395, 647, 722, 998, 1039
MalI GATC 4 cut(s) 55, 1119, 1197, 1259
MboI GATC 4 cut(s) 53, 1117, 1195, 1257
MboII GAAGA 3 cut(s) 396, 669, 1205
MflI RGATCY 2 cut(s) 53, 1195
MhlI GDGCHC 1 cut(s) 943
MlsI TGGCCA 1 cut(s) 1126
MluCI AATT 5 cut(s) 523, 571, 745, 1140, 1348
MluNI TGGCCA 1 cut(s) 1126
MlyI GAGTC 1 cut(s) 1163
Mox20I TGGCCA 1 cut(s) 1126
Mph1103I ATGCAT 1 cut(s) 1180
MroI TCCGGA 2 cut(s) 83, 104
MroXI GAANNNNTTC 1 cut(s) 1393
MscI TGGCCA 1 cut(s) 1126
MslI CAYNNNNRTG 1 cut(s) 1380
Msp20I TGGCCA 1 cut(s) 1126
MspA1I CMGCKG 3 cut(s) 285, 692, 1217
MspI CCGG 3 cut(s) 84, 105, 851
MspR9I CCNGG 2 cut(s) 357, 852
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 285
NciI CCSGG 1 cut(s) 852
NdeII GATC 4 cut(s) 53, 1117, 1195, 1257
NlaIII CATG 3 cut(s) 1182, 1241, 1385
NlaIV GGNNCC 6 cut(s) 42, 82, 103, 684, 954, 1287
NmeAIII GCCGAG 1 cut(s) 899
NmuCI GTSAC 2 cut(s) 998, 1039
NotI GCGGCCGC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 1180
NspI RCATGY 1 cut(s) 1182
PagI TCATGA 1 cut(s) 1237
PaqCI CACCTGC 2 cut(s) 704, 818
PdmI GAANNNNTTC 1 cut(s) 1393
PfeI GAWTC 2 cut(s) 1011, 1092
PflMI CCANNNNNTGG 3 cut(s) 362, 707, 815
PleI GAGTC 1 cut(s) 1162
PpsI GAGTC 1 cut(s) 1162
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 355
PspEI GGTNACC 1 cut(s) 647
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 6 cut(s) 42, 82, 103, 684, 954, 1287
PspPI GGNCC 6 cut(s) 791, 821, 848, 881, 952, 1364
PsrI GAACNNNNNNTAC 2 cut(s) 619, 651
PstI CTGCAG 2 cut(s) 691, 829
PsuI RGATCY 2 cut(s) 53, 1195
PvuII CAGCTG 2 cut(s) 692, 1217
RsaI GTAC 4 cut(s) 409, 674, 737, 1112
RsaNI GTAC 4 cut(s) 408, 673, 736, 1111
RseI CAYNNNNRTG 1 cut(s) 1380
SacII CCGCGG 1 cut(s) 286
Sau3AI GATC 4 cut(s) 53, 1117, 1195, 1257
Sau96I GGNCC 6 cut(s) 791, 821, 848, 881, 952, 1364
SbfI CCTGCAGG 1 cut(s) 829
SchI GAGTC 1 cut(s) 1163
ScrFI CCNGG 2 cut(s) 357, 852
SdaI CCTGCAGG 1 cut(s) 829
SduI GDGCHC 1 cut(s) 943
SfaNI GCATC 3 cut(s) 748, 847, 1165
SfcI CTRYAG 3 cut(s) 687, 825, 945
SfiI GGCCNNNNNGGCC 1 cut(s) 879
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 3 cut(s) 821, 848, 1364
SmiMI CAYNNNNRTG 1 cut(s) 1380
Sse8387I CCTGCAGG 1 cut(s) 829
Sse9I AATT 5 cut(s) 523, 571, 745, 1140, 1348
SspMI CTAG 3 cut(s) 57, 1008, 1290
StyD4I CCNGG 2 cut(s) 355, 850
StyI CCWWGG 2 cut(s) 652, 1289
TaiI ACGT 2 cut(s) 1108, 1402
TaqI TCGA 6 cut(s) 214, 247, 538, 922, 1047, 1354
TasI AATT 5 cut(s) 523, 571, 745, 1140, 1348
TauI GCSGC 9 cut(s) 41, 63, 177, 282, 285, 297, 300, 303, 873
TfiI GAWTC 2 cut(s) 1011, 1092
TscAI CASTG 3 cut(s) 328, 1127, 1267
TseFI GTSAC 2 cut(s) 998, 1039
TseI GCWGC 3 cut(s) 689, 692, 1205
Tsp45I GTSAC 2 cut(s) 998, 1039
TspDTI ATGAA 4 cut(s) 567, 789, 1065, 1206
TspGWI ACGGA 2 cut(s) 129, 156
TspRI CASTG 3 cut(s) 328, 1127, 1267
Van91I CCANNNNNTGG 3 cut(s) 362, 707, 815
VpaK11BI GGWCC 3 cut(s) 821, 848, 1364
XagI CCTNNNNNAGG 1 cut(s) 354
XapI RAATTY 1 cut(s) 1140
XceI RCATGY 1 cut(s) 1182
XmaJI CCTAGG 1 cut(s) 1289
XmnI GAANNNNTTC 1 cut(s) 1393
XspI CTAG 3 cut(s) 57, 1008, 1290
Zsp2I ATGCAT 1 cut(s) 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.