Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007365

Physical Location & Seq

Genomic Coordinates Forward (+)

77611561 .. 77615030

Gene Structure 3470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG485800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGATATTGAAATTGGTAATACTTGCATATAGCTGTGGGAATGTGAACTTTGCGAGAAGAACTGAGTGTAACAAGTGTGGTACGCCCTCTCCTGCGGGTGCTGGTGGCGGTGGGGGAGACCGTGGTGGTGGAGGTAGTTATAATAGAGGTGGAAGTGGTGGGGGATATGGTGATAACCGTGGTGGCAGAAGTGGTAATTATGATGGGGGTCGAAGTGGCAACTATGAAGGAGGTAAAGGTAGCAATTATGATGGAGGCAGAGGGGGTGGTTTTGATAGTAGAGGTGGAGGAGGTGGGAGTAGAGGTGGTTCTTATGGTGGTAACCAAGGAAGAGATGATGGTGGGTACGGTCAGGCTCCTGCAGCTGCTCCTCCATCTTATGGTGCAGGTGGCAGTTACCCACCATCGTACAATGCTAATTATGGAACAGATGCAGTCCCTCCTCCTACAAGCTATACTGGTGGGCCTGCTTCATATCCCCCATCCTATGGTGGTCCTGCAGGTGGTTATGGTGGTGATGGTCCGGGTGATGCAAGGAGTGGCGGCCGAGGTGGCCCTCCTGCTAAATACGATGGTGGATATGGTGGTGGTGGTCGAGGTGGTTATGGAAGTGCTCCTACAGAGGCCCCTGCTAAGGTGAAGCAATGTGATGAGAACTGTGATGATACTTGTGACAATGCTAGAATCTACATTTCAAATCTGCCACCTGATGTCACGGTCGATGAACTGCAAGCTCTTTTTGGAGGCATTGGACAAGTTGGGAGAATCAAGCAGAAACGTGGGTACAAGGATCAGTGGCCATATAACATCAAAATTTACACAGATGAGTCGGGAAAGAACAAAGGTGATGCATGTTTAGCCTATGAAGATCCAAATGCTGCACATTCAGCTGGCAGTTTTTACAACGGTCATGACATAAGGGGCTATAAGATCAGTGTTGCGATGGCAGAGAGGTCGGCACCTAGGGCTTACGACAATGGTGGTGGTAGAGGTGGTTATGGGGGCGGTGGGCGCAGGGACAATTATCGAGATGGTGGACCTGACAGACATCAGCATGGTGGAAACCGTTCACGTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

RRM_1 zf-RanBP

Protein Analysis

360

Amino Acids

36.36

Weight (kDa)

8.77

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58470 AT5G58470
fragaria_vesca	FvH4_3g39510 FvH4_3g39510 FvH4_3g39510 FvH4_3g39510
malus_domestica	MD03G1060300.v1.1 MD11G1063400.v1.1
prunus_persica	Prupe.6G050700_v2.0.a1 Prupe.6G050700_v2.0.a1
pyrus_communis	pycom03g04840 pycom11g05310
rosa_chinensis	RchiOBHm_Chr5g0071281
rosa_laevigata	RLG00000036198
rosa_multiflora	Rmu_sc0006990.1_g000011
rosa_roxburghii	Rroxscaffold_1G00009860
rosa_rugosa	Rorug05G0411100 Rorug05G0411100 Rorug05G0411100 Rorug05G0411100
rosa_samantha	Rh5AG467300 Rh5BG485800 Rh5CG510200 Rh5DG497000
rosa_wichuraiana	Rw5G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AarI	CACCTGC	2 cut(s)	377, 491
Acc36I	ACCTGC	2 cut(s)	377, 491
AccB1I	GGYRCC	1 cut(s)	958
AccB7I	CCANNNNNTGG	2 cut(s)	380, 488
AciI	CCGC	4 cut(s)	95, 108, 543, 1005
AclWI	GGATC	2 cut(s)	798, 863
AcoI	YGGCCR	2 cut(s)	544, 797
AcsI	RAATTY	1 cut(s)	813
AfaI	GTAC	4 cut(s)	82, 347, 410, 785
AfiI	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
AgsI	TTSAA	2 cut(s)	10, 696
AjiI	CACGTC	1 cut(s)	1073
AluBI	AGCT	5 cut(s)	33, 365, 453, 734, 890
AluI	AGCT	5 cut(s)	33, 365, 453, 734, 890
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	798, 863
AoxI	GGCC	5 cut(s)	464, 544, 553, 624, 797
ApeKI	GCWGC	3 cut(s)	362, 365, 878
ApoI	RAATTY	1 cut(s)	813
Asp700I	GAANNNNTTC	1 cut(s)	1066
AspA2I	CCTAGG	1 cut(s)	962
AspLEI	GCGC	1 cut(s)	1014
AspS9I	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	5 cut(s)	182, 527, 539, 649, 857
AvaII	GGWCC	3 cut(s)	494, 521, 1037
AvrII	CCTAGG	1 cut(s)	962
BalI	TGGCCA	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	958
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	352, 374, 865
BcgI	CGANNNNNNTGC	2 cut(s)	936, 970
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	681, 963
BfmI	CTRYAG	3 cut(s)	360, 498, 618
BfuAI	ACCTGC	2 cut(s)	377, 491
BglI	GCCNNNNNGGC	1 cut(s)	552
BisI	GCNGC	4 cut(s)	363, 366, 544, 879
BlnI	CCTAGG	1 cut(s)	962
BlsI	GCNGC	4 cut(s)	364, 367, 545, 880
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	3 cut(s)	494, 521, 1037
BmgBI	CACGTC	1 cut(s)	1073
BmgT120I	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
BmiI	GGNNCC	3 cut(s)	357, 627, 960
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	3 cut(s)	421, 520, 838
Bpu10I	CCTNAGC	1 cut(s)	633
BpuMI	CCSGG	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	5 cut(s)	121, 178, 325, 547, 962
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 289, 319
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
Bse1I	ACTGG	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	650
BseDI	CCNNGG	5 cut(s)	121, 178, 325, 547, 962
BseGI	GGATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	3 cut(s)	303, 360, 432
BseX3I	CGGCCG	1 cut(s)	544
BseXI	GCAGC	3 cut(s)	352, 374, 865
BsgI	GTGCAG	2 cut(s)	405, 864
Bsh1285I	CGRYCG	2 cut(s)	547, 720
BshFI	GGCC	5 cut(s)	466, 546, 555, 626, 799
BshNI	GGYRCC	1 cut(s)	958
BsiEI	CGRYCG	2 cut(s)	547, 720
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	2 cut(s)	422, 1031
BslI	CCNNNNNNNGG	4 cut(s)	380, 488, 503, 634
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	422, 1031
BsnI	GGCC	5 cut(s)	466, 546, 555, 626, 799
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	3 cut(s)	790, 868, 930
BspACI	CCGC	4 cut(s)	95, 108, 543, 1005
BspANI	GGCC	5 cut(s)	466, 546, 555, 626, 799
BspCNI	CTCAG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	3 cut(s)	357, 627, 960
BspMAI	CTGCAG	2 cut(s)	364, 502
BspMI	ACCTGC	2 cut(s)	377, 491
BspPI	GGATC	2 cut(s)	798, 863
BspT107I	GGYRCC	1 cut(s)	958
BspTNI	GGTCTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	5 cut(s)	121, 178, 325, 547, 962
BssMI	GATC	3 cut(s)	790, 868, 930
BssT1I	CCWWGG	2 cut(s)	325, 962
Bst4CI	ACNGT	7 cut(s)	122, 179, 350, 659, 718, 908, 1067
Bst6I	CTCTTC	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	468, 732, 892
BstDEI	CTNAG	2 cut(s)	63, 633
BstDSI	CCRYGG	2 cut(s)	121, 178
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	1014
BstKTI	GATC	3 cut(s)	793, 871, 933
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	3 cut(s)	790, 868, 930
BstMCI	CGRYCG	2 cut(s)	547, 720
BstMWI	GCNNNNNNNGC	6 cut(s)	362, 552, 857, 887, 965, 1011
BstNSI	RCATGY	1 cut(s)	855
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	3 cut(s)	360, 498, 618
BstV1I	GCAGC	3 cut(s)	352, 374, 865
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
BstZI	CGGCCG	1 cut(s)	544
BsuRI	GGCC	5 cut(s)	466, 546, 555, 626, 799
BtgI	CCRYGG	2 cut(s)	121, 178
BtgZI	GCGATG	1 cut(s)	956
BtrI	CACGTC	1 cut(s)	1073
BtsCI	GGATG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	800, 940
BveI	ACCTGC	2 cut(s)	377, 491
Cac8I	GCNNGC	3 cut(s)	468, 732, 892
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	1 cut(s)	1014
Cfr13I	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
Csp6I	GTAC	4 cut(s)	81, 346, 409, 784
CspCI	CAANNNNNGTGG	2 cut(s)	964, 999
CviAII	CATG	3 cut(s)	852, 911, 1055
CviQI	GTAC	4 cut(s)	81, 346, 409, 784
DdeI	CTNAG	2 cut(s)	63, 633
DpnI	GATC	3 cut(s)	792, 870, 932
DpnII	GATC	3 cut(s)	790, 868, 930
EaeI	YGGCCR	2 cut(s)	544, 797
EagI	CGGCCG	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
EclXI	CGGCCG	1 cut(s)	544
Eco130I	CCWWGG	2 cut(s)	325, 962
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	3 cut(s)	494, 521, 1037
Eco52I	CGGCCG	1 cut(s)	544
Eco91I	GGTNACC	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	325, 962
EcoT22I	ATGCAT	1 cut(s)	853
ErhI	CCWWGG	2 cut(s)	325, 962
FaeI	CATG	3 cut(s)	855, 914, 1058
FaqI	GGGAC	2 cut(s)	422, 1031
FatI	CATG	3 cut(s)	851, 910, 1054
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	363, 366, 544, 879
FokI	GGATG	1 cut(s)	469
Fsp4HI	GCNGC	4 cut(s)	363, 366, 544, 879
FspBI	CTAG	2 cut(s)	681, 963
GlaI	GCGC	1 cut(s)	1013
GluI	GCNGC	4 cut(s)	363, 366, 544, 879
HaeIII	GGCC	5 cut(s)	466, 546, 555, 626, 799
HapII	CCGG	1 cut(s)	524
HhaI	GCGC	1 cut(s)	1014
Hin1II	CATG	3 cut(s)	855, 914, 1058
Hin6I	GCGC	1 cut(s)	1012
HinP1I	GCGC	1 cut(s)	1012
HinfI	GANTC	3 cut(s)	684, 765, 827
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	5 cut(s)	182, 527, 539, 649, 857
Hpy166II	GTNNAC	3 cut(s)	46, 1037, 1070
Hpy188III	TCNNGA	3 cut(s)	831, 911, 1028
Hpy8I	GTNNAC	3 cut(s)	46, 1037, 1070
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	7 cut(s)	122, 179, 350, 659, 718, 908, 1067
HpyCH4IV	ACGT	2 cut(s)	778, 1072
HpyCH4V	TGCA	9 cut(s)	26, 362, 386, 434, 500, 533, 730, 851, 881
HpyF10VI	GCNNNNNNNGC	6 cut(s)	362, 552, 857, 887, 965, 1011
HpyF3I	CTNAG	2 cut(s)	63, 633
HpySE526I	ACGT	2 cut(s)	778, 1072
Hsp92II	CATG	3 cut(s)	855, 914, 1058
HspAI	GCGC	1 cut(s)	1012
Kzo9I	GATC	3 cut(s)	790, 868, 930
LmnI	GCTCC	3 cut(s)	361, 373, 619
Lsp1109I	GCAGC	3 cut(s)	352, 374, 865
LweI	GCATC	3 cut(s)	421, 520, 838
MaeI	CTAG	2 cut(s)	681, 963
MaeII	ACGT	2 cut(s)	778, 1072
MaeIII	GTNAC	5 cut(s)	68, 320, 395, 671, 712
MalI	GATC	3 cut(s)	792, 870, 932
MboI	GATC	3 cut(s)	790, 868, 930
MboII	GAAGA	3 cut(s)	69, 342, 878
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	1 cut(s)	616
MlsI	TGGCCA	1 cut(s)	799
MluCI	AATT	6 cut(s)	11, 196, 244, 418, 813, 1021
MluNI	TGGCCA	1 cut(s)	799
MlyI	GAGTC	1 cut(s)	836
Mox20I	TGGCCA	1 cut(s)	799
Mph1103I	ATGCAT	1 cut(s)	853
MroXI	GAANNNNTTC	1 cut(s)	1066
MscI	TGGCCA	1 cut(s)	799
MslI	CAYNNNNRTG	1 cut(s)	1053
Msp20I	TGGCCA	1 cut(s)	799
MspA1I	CMGCKG	2 cut(s)	365, 890
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	6 cut(s)	362, 552, 857, 887, 965, 1011
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	790, 868, 930
NlaIII	CATG	3 cut(s)	855, 914, 1058
NlaIV	GGNNCC	3 cut(s)	357, 627, 960
NmeAIII	GCCGAG	1 cut(s)	572
NmuCI	GTSAC	2 cut(s)	671, 712
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	1 cut(s)	855
PagI	TCATGA	1 cut(s)	910
PaqCI	CACCTGC	2 cut(s)	377, 491
PdmI	GAANNNNTTC	1 cut(s)	1066
PfeI	GAWTC	2 cut(s)	684, 765
PflMI	CCANNNNNTGG	2 cut(s)	380, 488
PkrI	GCNGC	4 cut(s)	364, 367, 545, 880
PleI	GAGTC	1 cut(s)	835
PpsI	GAGTC	1 cut(s)	835
PsiI	TTATAA	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	357, 627, 960
PspPI	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PstI	CTGCAG	2 cut(s)	364, 502
PsuI	RGATCY	1 cut(s)	868
PvuII	CAGCTG	2 cut(s)	365, 890
RsaI	GTAC	4 cut(s)	82, 347, 410, 785
RsaNI	GTAC	4 cut(s)	81, 346, 409, 784
RseI	CAYNNNNRTG	1 cut(s)	1053
SatI	GCNGC	4 cut(s)	363, 366, 544, 879
Sau3AI	GATC	3 cut(s)	790, 868, 930
Sau96I	GGNCC	6 cut(s)	464, 494, 521, 554, 625, 1037
SbfI	CCTGCAGG	1 cut(s)	502
SchI	GAGTC	1 cut(s)	836
ScrFI	CCNGG	1 cut(s)	525
SdaI	CCTGCAGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	421, 520, 838
SfcI	CTRYAG	3 cut(s)	360, 498, 618
SfiI	GGCCNNNNNGGCC	1 cut(s)	552
SinI	GGWCC	3 cut(s)	494, 521, 1037
SmiMI	CAYNNNNRTG	1 cut(s)	1053
Sse8387I	CCTGCAGG	1 cut(s)	502
Sse9I	AATT	6 cut(s)	11, 196, 244, 418, 813, 1021
SsiI	CCGC	4 cut(s)	95, 108, 543, 1005
SspMI	CTAG	2 cut(s)	681, 963
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	2 cut(s)	325, 962
TaaI	ACNGT	7 cut(s)	122, 179, 350, 659, 718, 908, 1067
TaiI	ACGT	2 cut(s)	781, 1075
TaqI	TCGA	4 cut(s)	211, 595, 720, 1027
TasI	AATT	6 cut(s)	11, 196, 244, 418, 813, 1021
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	684, 765
TscAI	CASTG	2 cut(s)	800, 940
TseFI	GTSAC	2 cut(s)	671, 712
TseI	GCWGC	3 cut(s)	362, 365, 878
Tsp45I	GTSAC	2 cut(s)	671, 712
TspDTI	ATGAA	4 cut(s)	240, 462, 738, 879
TspRI	CASTG	2 cut(s)	800, 940
Van91I	CCANNNNNTGG	2 cut(s)	380, 488
VpaK11BI	GGWCC	3 cut(s)	494, 521, 1037
XapI	RAATTY	1 cut(s)	813
XceI	RCATGY	1 cut(s)	855
XmaJI	CCTAGG	1 cut(s)	962
XmnI	GAANNNNTTC	1 cut(s)	1066
XspI	CTAG	2 cut(s)	681, 963
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.