Rw5G043410

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007365
Physical Location & Seq
Forward (+)
76256016 .. 76259941
3926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043410.1

Sequence Viewer

Length: 1440 bp
ATGGCTGGGATGTATGGTCAGGAGGGCGGTGGTGGTGCCGCTCCGCCGTATGGATCTAGCGGCGGTGGTGGCTACGGTGGCTCCGGAGGGTATGGAGGCGGTTCCGGAGGTTATGGAGGAGGCGGTGGCGGTGGAGGCTACGGAGGAGGAGGTGGTGGATATGGAGGTAAAGGCGGCGATAGCGGTGGTTACGGTGGTGGAGGCCGTGGTGGTCGAGGTGGAGGAGGTTATGGTGGCGGTGGCGGTCGAGGTGGAGGATATCAAGGCGACCGTGGTGGCGGCCGCGGAGGTGGTGGTGGCGGCGGCAGAGGTGGCCGTGGTGGCAGTGGAAGGGATGGTGATTGGCCTTGCCCTAATCCAGGCTGTGGGAATGTGAACTTTGCGAGAAGAACTGAGTGTAACAAGTGTGGTACGCCCTCTCCTGCGGGTGCTGGTGGCGGTGGGGCAGACCGTGGTGGTGGAGGTGGTTATAATAGAGGTGGAAGTGGTGGGGGATATGGTGATAACCGTGGTGGCAGAAGTGGTAATTATGATGGGGGTCGAAGTGGCAACTATGAAGGAGGTAAAGGTAGCAATTATGATGGAGGCAGAGGGGGTGGTTTTGATAGTAGAGGTGGAGGAGGTGGGAGTAGAGGTGGTTCTTATGGTGGTAACCAAGGAAGAGATGATGGTGGGTACGGTCAGGCTCCTGCAGCTGCTCCTCCATCTTATGGTGCAGGTGGCAGTTACCCACCATCGTACAATGCTAATTATGGAACTGATGCAGTCCCTCCTCCTACAAGCTATACTGGTGGGCCTGCTTCATATCCCCCATCCTATGGTGGTCCTGCAGGTGGTTATGGTGGTGATGGTCCTGCAGGTGGTTATGGTGGTGATGGTCCGGGTGATGCAAGGAGTGGCGGCCGAGGTGGCCCTCCTGCTAAATACGATGGTGGATATGGTGGTGGTGGTCGAGGTGGTTATGGAAGTGCTCCTACAGAGGCCCCTGCTAAGGTGAAGCAATGTGATGAGAACTGTGATGATACTTGTGACAATGCTAGAATCTACATTTCAAATCTGCCACCTGATGTCACGGTCGATGAACTGCAAGCTCTTTTTGGAGGCATTGGACAAGTTGGGAGAATCAAGCAGAAACGTGGGTACAAGGATCAGTGGCCATATAACATCAAAATTTACACAGATGAATCGGGAAAGAACAAAGGTGATGCATGTTTAGCCTATGAAGATCCAAATGCTGCACATTCAGCTGGCAGTTTTTACAACGGTCATGACATAAGGGGCTATAAGATCAGTGTTGCGATGGCGGAGAGGTCGGCACCTAGGGCTTACGACAATGGTGGTGGTAGAGGTGGTTATGGGGGCGGTGGGCGCAGGGACAATTATCGAGATGGTGGACCTGACAGACATCAGCATGGTGGAAACCGTTCACGTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
RRM_1 zf-RanBP

Protein Analysis

479

Amino Acids

45.91

Weight (kDa)

8.86

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 111 - 141 1.6e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AarI CACCTGC 3 cut(s) 707, 821, 848
Acc36I ACCTGC 3 cut(s) 707, 821, 848
AccB1I GGYRCC 2 cut(s) 35, 1315
AccB7I CCANNNNNTGG 3 cut(s) 365, 710, 818
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 1 cut(s) 285
AccIII TCCGGA 2 cut(s) 83, 104
AclWI GGATC 3 cut(s) 61, 1155, 1220
AcoI YGGCCR 4 cut(s) 280, 313, 901, 1154
AcsI RAATTY 1 cut(s) 1170
AfaI GTAC 4 cut(s) 412, 677, 740, 1142
AfiI CCNNNNNNNGG 8 cut(s) 50, 359, 365, 710, 818, 833, 860, 991
AgsI TTSAA 1 cut(s) 1053
AjiI CACGTC 1 cut(s) 1430
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 4 cut(s) 695, 783, 1091, 1247
AluI AGCT 4 cut(s) 695, 783, 1091, 1247
Alw21I GWGCWC 1 cut(s) 973
AlwI GGATC 3 cut(s) 61, 1155, 1220
Aor13HI TCCGGA 2 cut(s) 83, 104
AoxI GGCC 9 cut(s) 202, 280, 313, 344, 794, 901, 910, 981, 1154
ApeKI GCWGC 3 cut(s) 692, 695, 1235
ApoI RAATTY 1 cut(s) 1170
Asp700I GAANNNNTTC 1 cut(s) 1423
AspA2I CCTAGG 1 cut(s) 1319
AspLEI GCGC 1 cut(s) 1371
AspS9I GGNCC 7 cut(s) 794, 824, 851, 878, 911, 982, 1394
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 7 cut(s) 350, 512, 857, 884, 896, 1006, 1214
AvaII GGWCC 4 cut(s) 824, 851, 878, 1394
AvrII CCTAGG 1 cut(s) 1319
BalI TGGCCA 1 cut(s) 1156
BanI GGYRCC 2 cut(s) 35, 1315
BarI GAAGNNNNNNTAC 2 cut(s) 958, 990
Bbv12I GWGCWC 1 cut(s) 973
BbvI GCAGC 3 cut(s) 682, 704, 1222
BceAI ACGGC 3 cut(s) 31, 189, 300
BciT130I CCWGG 1 cut(s) 360
BcnI CCSGG 1 cut(s) 882
BfaI CTAG 3 cut(s) 57, 1038, 1320
BfmI CTRYAG 4 cut(s) 690, 828, 855, 975
BfuAI ACCTGC 3 cut(s) 707, 821, 848
BglI GCCNNNNNGGC 2 cut(s) 321, 909
BlnI CCTAGG 1 cut(s) 1319
Bme1390I CCNGG 2 cut(s) 360, 882
Bme18I GGWCC 4 cut(s) 824, 851, 878, 1394
BmgBI CACGTC 1 cut(s) 1430
BmgT120I GGNCC 7 cut(s) 794, 824, 851, 878, 911, 982, 1394
BmiI GGNNCC 6 cut(s) 37, 82, 103, 687, 984, 1317
BmrFI CCNGG 2 cut(s) 360, 882
BmsI GCATC 3 cut(s) 751, 877, 1195
Bpu10I CCTNAGC 1 cut(s) 990
BpuMI CCSGG 1 cut(s) 882
BsaJI CCNNGG 9 cut(s) 205, 271, 283, 316, 451, 508, 655, 904, 1319
BsaWI WCCGGW 2 cut(s) 83, 104
BsaXI ACNNNNNCTCC 6 cut(s) 65, 95, 403, 433, 619, 649
Bsc4I CCNNNNNNNGG 8 cut(s) 50, 359, 365, 710, 818, 833, 860, 991
Bse1I ACTGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 1007
BseAI TCCGGA 2 cut(s) 83, 104
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 9 cut(s) 205, 271, 283, 316, 451, 508, 655, 904, 1319
BseGI GGATG 3 cut(s) 15, 340, 812
BseLI CCNNNNNNNGG 8 cut(s) 50, 359, 365, 710, 818, 833, 860, 991
BseMI GCAATG 1 cut(s) 1007
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 793
BseRI GAGGAG 7 cut(s) 132, 159, 162, 237, 633, 690, 762
BseX3I CGGCCG 2 cut(s) 280, 901
BseXI GCAGC 3 cut(s) 682, 704, 1222
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 2 cut(s) 735, 1221
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 5 cut(s) 247, 271, 283, 904, 1077
BshFI GGCC 9 cut(s) 204, 282, 315, 346, 796, 903, 912, 983, 1156
BshNI GGYRCC 2 cut(s) 35, 1315
BsiEI CGRYCG 5 cut(s) 247, 271, 283, 904, 1077
BsiHKAI GWGCWC 1 cut(s) 973
BsiSI CCGG 3 cut(s) 84, 105, 881
BslFI GGGAC 2 cut(s) 752, 1388
BslI CCNNNNNNNGG 8 cut(s) 50, 359, 365, 710, 818, 833, 860, 991
BsmFI GGGAC 2 cut(s) 752, 1388
BsnI GGCC 9 cut(s) 204, 282, 315, 346, 796, 903, 912, 983, 1156
Bsp1286I GDGCHC 1 cut(s) 973
Bsp13I TCCGGA 2 cut(s) 83, 104
Bsp143I GATC 4 cut(s) 53, 1147, 1225, 1287
BspANI GGCC 9 cut(s) 204, 282, 315, 346, 796, 903, 912, 983, 1156
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 2 cut(s) 83, 104
BspFNI CGCG 1 cut(s) 285
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 6 cut(s) 37, 82, 103, 687, 984, 1317
BspMAI CTGCAG 3 cut(s) 694, 832, 859
BspMI ACCTGC 3 cut(s) 707, 821, 848
BspPI GGATC 3 cut(s) 61, 1155, 1220
BspT107I GGYRCC 2 cut(s) 35, 1315
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 1007
BsrI ACTGG 1 cut(s) 793
BssECI CCNNGG 9 cut(s) 205, 271, 283, 316, 451, 508, 655, 904, 1319
BssMI GATC 4 cut(s) 53, 1147, 1225, 1287
BssT1I CCWWGG 2 cut(s) 655, 1319
Bst2UI CCWGG 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 655
BstC8I GCNNGC 3 cut(s) 798, 1089, 1249
BstDEI CTNAG 2 cut(s) 393, 990
BstDSI CCRYGG 6 cut(s) 205, 271, 283, 316, 451, 508
BstEII GGTNACC 1 cut(s) 650
BstENI CCTNNNNNAGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 15, 340, 812
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 1371
BstKTI GATC 4 cut(s) 56, 1150, 1228, 1290
BstMBI GATC 4 cut(s) 53, 1147, 1225, 1287
BstMCI CGRYCG 5 cut(s) 247, 271, 283, 904, 1077
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 1212
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 2 cut(s) 358, 880
BstSFI CTRYAG 4 cut(s) 690, 828, 855, 975
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 682, 704, 1222
BstX2I RGATCY 2 cut(s) 53, 1225
BstYI RGATCY 2 cut(s) 53, 1225
BstZI CGGCCG 2 cut(s) 280, 901
BsuRI GGCC 9 cut(s) 204, 282, 315, 346, 796, 903, 912, 983, 1156
BtgI CCRYGG 6 cut(s) 205, 271, 283, 316, 451, 508
BtgZI GCGATG 1 cut(s) 1313
BtrI CACGTC 1 cut(s) 1430
BtsCI GGATG 3 cut(s) 15, 340, 812
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 3 cut(s) 331, 1157, 1297
BveI ACCTGC 3 cut(s) 707, 821, 848
Cac8I GCNNGC 3 cut(s) 798, 1089, 1249
CciI TCATGA 1 cut(s) 1267
CciNI GCGGCCGC 1 cut(s) 280
CfoI GCGC 1 cut(s) 1371
Cfr13I GGNCC 7 cut(s) 794, 824, 851, 878, 911, 982, 1394
Cfr42I CCGCGG 1 cut(s) 286
Csp6I GTAC 4 cut(s) 411, 676, 739, 1141
CspCI CAANNNNNGTGG 2 cut(s) 1321, 1356
CviAII CATG 3 cut(s) 1209, 1268, 1412
CviQI GTAC 4 cut(s) 411, 676, 739, 1141
DdeI CTNAG 2 cut(s) 393, 990
DpnI GATC 4 cut(s) 55, 1149, 1227, 1289
DpnII GATC 4 cut(s) 53, 1147, 1225, 1287
EaeI YGGCCR 4 cut(s) 280, 313, 901, 1154
EagI CGGCCG 2 cut(s) 280, 901
Eam1104I CTCTTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 655
EciI GGCGGA 2 cut(s) 33, 1319
EclXI CGGCCG 2 cut(s) 280, 901
Eco130I CCWWGG 2 cut(s) 655, 1319
Eco32I GATATC 1 cut(s) 260
Eco47I GGWCC 4 cut(s) 824, 851, 878, 1394
Eco52I CGGCCG 2 cut(s) 280, 901
Eco91I GGTNACC 1 cut(s) 650
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 982
EcoO65I GGTNACC 1 cut(s) 650
EcoRII CCWGG 1 cut(s) 358
EcoRV GATATC 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 655, 1319
EcoT22I ATGCAT 1 cut(s) 1210
ErhI CCWWGG 2 cut(s) 655, 1319
FaeI CATG 3 cut(s) 1212, 1271, 1415
FaqI GGGAC 2 cut(s) 752, 1388
FatI CATG 3 cut(s) 1208, 1267, 1411
FauI CCCGC 1 cut(s) 418
FokI GGATG 3 cut(s) 22, 347, 799
FspBI CTAG 3 cut(s) 57, 1038, 1320
GlaI GCGC 1 cut(s) 1370
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 9 cut(s) 204, 282, 315, 346, 796, 903, 912, 983, 1156
HapII CCGG 3 cut(s) 84, 105, 881
HhaI GCGC 1 cut(s) 1371
Hin1II CATG 3 cut(s) 1212, 1271, 1415
Hin6I GCGC 1 cut(s) 1369
HinP1I GCGC 1 cut(s) 1369
HinfI GANTC 3 cut(s) 1041, 1122, 1184
HpaII CCGG 3 cut(s) 84, 105, 881
HphI GGTGA 7 cut(s) 350, 512, 857, 884, 896, 1006, 1214
Hpy166II GTNNAC 3 cut(s) 376, 1394, 1427
Hpy188III TCNNGA 6 cut(s) 20, 84, 105, 1188, 1268, 1385
Hpy8I GTNNAC 3 cut(s) 376, 1394, 1427
HpyAV CCTTC 2 cut(s) 324, 551
HpyCH4IV ACGT 2 cut(s) 1135, 1429
HpyCH4V TGCA 9 cut(s) 692, 716, 764, 830, 857, 890, 1087, 1208, 1238
HpyF3I CTNAG 2 cut(s) 393, 990
HpySE526I ACGT 2 cut(s) 1135, 1429
Hsp92II CATG 3 cut(s) 1212, 1271, 1415
HspAI GCGC 1 cut(s) 1369
Kpn2I TCCGGA 2 cut(s) 83, 104
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 4 cut(s) 53, 1147, 1225, 1287
LmnI GCTCC 5 cut(s) 46, 86, 691, 703, 976
Lsp1109I GCAGC 3 cut(s) 682, 704, 1222
LweI GCATC 3 cut(s) 751, 877, 1195
MaeI CTAG 3 cut(s) 57, 1038, 1320
MaeII ACGT 2 cut(s) 1135, 1429
MaeIII GTNAC 6 cut(s) 188, 398, 650, 725, 1028, 1069
MalI GATC 4 cut(s) 55, 1149, 1227, 1289
MbiI CCGCTC 1 cut(s) 41
MboI GATC 4 cut(s) 53, 1147, 1225, 1287
MboII GAAGA 3 cut(s) 399, 672, 1235
MflI RGATCY 2 cut(s) 53, 1225
MhlI GDGCHC 1 cut(s) 973
MlsI TGGCCA 1 cut(s) 1156
MluCI AATT 5 cut(s) 526, 574, 748, 1170, 1378
MluNI TGGCCA 1 cut(s) 1156
Mox20I TGGCCA 1 cut(s) 1156
Mph1103I ATGCAT 1 cut(s) 1210
MroI TCCGGA 2 cut(s) 83, 104
MroXI GAANNNNTTC 1 cut(s) 1423
MscI TGGCCA 1 cut(s) 1156
MslI CAYNNNNRTG 1 cut(s) 1410
Msp20I TGGCCA 1 cut(s) 1156
MspA1I CMGCKG 3 cut(s) 285, 695, 1247
MspI CCGG 3 cut(s) 84, 105, 881
MspR9I CCNGG 2 cut(s) 360, 882
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 1 cut(s) 285
NciI CCSGG 1 cut(s) 882
NdeII GATC 4 cut(s) 53, 1147, 1225, 1287
NlaIII CATG 3 cut(s) 1212, 1271, 1415
NlaIV GGNNCC 6 cut(s) 37, 82, 103, 687, 984, 1317
NmeAIII GCCGAG 1 cut(s) 929
NmuCI GTSAC 2 cut(s) 1028, 1069
NotI GCGGCCGC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 1210
NspI RCATGY 1 cut(s) 1212
PagI TCATGA 1 cut(s) 1267
PaqCI CACCTGC 3 cut(s) 707, 821, 848
PdmI GAANNNNTTC 1 cut(s) 1423
PfeI GAWTC 3 cut(s) 1041, 1122, 1184
PflMI CCANNNNNTGG 3 cut(s) 365, 710, 818
PsiI TTATAA 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 358
PspEI GGTNACC 1 cut(s) 650
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 6 cut(s) 37, 82, 103, 687, 984, 1317
PspPI GGNCC 7 cut(s) 794, 824, 851, 878, 911, 982, 1394
PsrI GAACNNNNNNTAC 2 cut(s) 622, 654
PstI CTGCAG 3 cut(s) 694, 832, 859
PsuI RGATCY 2 cut(s) 53, 1225
PvuII CAGCTG 2 cut(s) 695, 1247
RsaI GTAC 4 cut(s) 412, 677, 740, 1142
RsaNI GTAC 4 cut(s) 411, 676, 739, 1141
RseI CAYNNNNRTG 1 cut(s) 1410
SacII CCGCGG 1 cut(s) 286
Sau3AI GATC 4 cut(s) 53, 1147, 1225, 1287
Sau96I GGNCC 7 cut(s) 794, 824, 851, 878, 911, 982, 1394
SbfI CCTGCAGG 2 cut(s) 832, 859
ScrFI CCNGG 2 cut(s) 360, 882
SdaI CCTGCAGG 2 cut(s) 832, 859
SduI GDGCHC 1 cut(s) 973
SfaNI GCATC 3 cut(s) 751, 877, 1195
SfcI CTRYAG 4 cut(s) 690, 828, 855, 975
SfiI GGCCNNNNNGGCC 1 cut(s) 909
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 4 cut(s) 824, 851, 878, 1394
SmiMI CAYNNNNRTG 1 cut(s) 1410
Sse8387I CCTGCAGG 2 cut(s) 832, 859
Sse9I AATT 5 cut(s) 526, 574, 748, 1170, 1378
SspMI CTAG 3 cut(s) 57, 1038, 1320
StyD4I CCNGG 2 cut(s) 358, 880
StyI CCWWGG 2 cut(s) 655, 1319
TaiI ACGT 2 cut(s) 1138, 1432
TaqI TCGA 6 cut(s) 214, 247, 541, 952, 1077, 1384
TasI AATT 5 cut(s) 526, 574, 748, 1170, 1378
TauI GCSGC 8 cut(s) 41, 63, 177, 282, 285, 303, 306, 903
TfiI GAWTC 3 cut(s) 1041, 1122, 1184
TscAI CASTG 3 cut(s) 331, 1157, 1297
TseFI GTSAC 2 cut(s) 1028, 1069
TseI GCWGC 3 cut(s) 692, 695, 1235
Tsp45I GTSAC 2 cut(s) 1028, 1069
TspDTI ATGAA 5 cut(s) 570, 792, 1095, 1197, 1236
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 331, 1157, 1297
Van91I CCANNNNNTGG 3 cut(s) 365, 710, 818
VpaK11BI GGWCC 4 cut(s) 824, 851, 878, 1394
XagI CCTNNNNNAGG 1 cut(s) 357
XapI RAATTY 1 cut(s) 1170
XceI RCATGY 1 cut(s) 1212
XmaJI CCTAGG 1 cut(s) 1319
XmnI GAANNNNTTC 1 cut(s) 1423
XspI CTAG 3 cut(s) 57, 1038, 1320
Zsp2I ATGCAT 1 cut(s) 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.