AT5G62040

brother of FT and

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007031
Physical Location & Seq
Forward (+)
24922802 .. 24923797
996 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62040.1

Sequence Viewer

Length: 534 bp
ATGTCAAGAGAAATAGAGCCACTAATAGTGGGAAGAGTGATAGGAGATGTACTCGAAATGTTTAATCCAAGTGTGACAATGAGAGTCACTTTCAATTCCAACACAATCGTATCCAATGGTCACGAGCTCGCGCCTTCTCTTCTCCTCTCTAAGCCTCGCGTTGAGATCGGTGGCCAAGATCTTCGTTCCTTCTTCACCTTAATCATGATGGACCCCGATGCCCCGAGTCCTAGTAATCCTTATATGCGTGAATATCTGCATTGGATGGTGACAGATATTCCCGGGACAACCGATGCTTCTTTTGGGAGAGAGATAGTGAGATATGAGACGCCTAAACCGGTGGCGGGAATACACAGATACGTCTTTGCGCTATTCAAACAGAGAGGGAGGCAAGCTGTGAAGGCAGCGCCGGAAACTAGAGAGTGTTTCAACACAAACGCTTTCTCTTCTTACTTTGGTCTTTCTCAACCTGTTGCTGCTGTTTACTTCAACGCCCAACGTGAAACTGCTCCTCGACGACGTCCTTCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

177

Amino Acids

20.01

Weight (kDa)

9.16

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 61 - 149 3.6e-13 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 523
AccII CGCG 2 cut(s) 131, 159
AciI CCGC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 172
AcyI GRCGYC 2 cut(s) 329, 520
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 344
AgeI ACCGGT 1 cut(s) 337
AgsI TTSAA 4 cut(s) 94, 376, 430, 490
AluBI AGCT 2 cut(s) 127, 395
AluI AGCT 2 cut(s) 127, 395
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 320
Ama87I CYCGRG 2 cut(s) 223, 281
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 404, 476
AsiGI ACCGGT 1 cut(s) 337
AspLEI GCGC 3 cut(s) 133, 370, 409
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 2 cut(s) 282, 283
AsuHPI GGTGA 2 cut(s) 187, 280
AvaI CYCGRG 2 cut(s) 223, 281
AvaII GGWCC 1 cut(s) 211
BaeI ACNNNNGTAYC 2 cut(s) 93, 126
BalI TGGCCA 1 cut(s) 174
BanII GRGCYC 1 cut(s) 129
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 416, 463
BccI CCATC 2 cut(s) 202, 259
BciVI GTATCC 1 cut(s) 121
BcnI CCSGG 2 cut(s) 282, 283
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 2 cut(s) 231, 417
BfoI RGCGCY 1 cut(s) 410
BfuI GTATCC 1 cut(s) 121
BglII AGATCT 1 cut(s) 178
BisI GCNGC 2 cut(s) 405, 477
BlsI GCNGC 2 cut(s) 406, 478
Bme1390I CCNGG 2 cut(s) 282, 283
Bme18I GGWCC 1 cut(s) 211
BmeT110I CYCGRG 2 cut(s) 223, 281
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 282, 283
BmsI GCATC 2 cut(s) 208, 283
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpuMI CCSGG 2 cut(s) 282, 283
BsaHI GRCGYC 2 cut(s) 329, 520
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 337
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 344
BseRI GAGGAG 2 cut(s) 134, 501
BseXI GCAGC 2 cut(s) 416, 463
Bsh1236I CGCG 2 cut(s) 131, 159
BshFI GGCC 1 cut(s) 174
BshTI ACCGGT 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 2 cut(s) 223, 281
BsiSI CCGG 3 cut(s) 282, 338, 410
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 320
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 174
BsoBI CYCGRG 2 cut(s) 223, 281
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 165, 178
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 174
BspFNI CGCG 2 cut(s) 131, 159
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 2 cut(s) 165, 178
BssNI GRCGYC 2 cut(s) 329, 520
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst6I CTCTTC 3 cut(s) 28, 144, 451
BstACI GRCGYC 2 cut(s) 329, 520
BstC8I GCNNGC 2 cut(s) 129, 393
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 270
BstFNI CGCG 2 cut(s) 131, 159
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 3 cut(s) 133, 370, 409
BstKTI GATC 2 cut(s) 168, 181
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 2 cut(s) 165, 178
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 280, 281
BstUI CGCG 2 cut(s) 131, 159
BstV1I GCAGC 2 cut(s) 416, 463
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 129, 393
CciI TCATGA 1 cut(s) 204
CfoI GCGC 3 cut(s) 133, 370, 409
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 211
Cfr9I CCCGGG 1 cut(s) 281
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 337
CviAII CATG 1 cut(s) 205
CviJI RGCY 5 cut(s) 19, 127, 154, 174, 395
CviKI_1 RGCY 5 cut(s) 19, 127, 154, 174, 395
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 167, 180
DpnII GATC 2 cut(s) 165, 178
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 3 cut(s) 28, 144, 451
EarI CTCTTC 3 cut(s) 28, 144, 451
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 127
Eco88I CYCGRG 2 cut(s) 223, 281
EcoICRI GAGCTC 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 1 cut(s) 208
FaiI YATR 4 cut(s) 206, 243, 245, 324
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 405, 477
FokI GGATG 1 cut(s) 277
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 405, 477
FspBI CTAG 2 cut(s) 231, 417
GlaI GCGC 3 cut(s) 132, 369, 408
GluI GCNGC 2 cut(s) 405, 477
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 1 cut(s) 174
HapII CCGG 3 cut(s) 282, 338, 410
HgaI GACGC 1 cut(s) 337
HhaI GCGC 3 cut(s) 133, 370, 409
Hin1I GRCGYC 2 cut(s) 329, 520
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 3 cut(s) 131, 368, 407
HinP1I GCGC 3 cut(s) 131, 368, 407
HinfI GANTC 2 cut(s) 84, 226
HpaII CCGG 3 cut(s) 282, 338, 410
HphI GGTGA 2 cut(s) 187, 280
Hpy166II GTNNAC 1 cut(s) 484
Hpy188III TCNNGA 3 cut(s) 6, 122, 205
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 2 cut(s) 519, 522
HpyAV CCTTC 4 cut(s) 144, 199, 394, 534
HpyCH4IV ACGT 3 cut(s) 360, 499, 520
HpyCH4V TGCA 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 3 cut(s) 360, 499, 520
Hsp92I GRCGYC 2 cut(s) 329, 520
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 3 cut(s) 131, 368, 407
Kzo9I GATC 2 cut(s) 165, 178
LmnI GCTCC 1 cut(s) 514
LpnPI CCDG 4 cut(s) 295, 351, 423, 483
Lsp1109I GCAGC 2 cut(s) 416, 463
LweI GCATC 2 cut(s) 208, 283
MaeI CTAG 2 cut(s) 231, 417
MaeII ACGT 3 cut(s) 360, 499, 520
MaeIII GTNAC 4 cut(s) 73, 85, 119, 268
MalI GATC 2 cut(s) 167, 180
MboI GATC 2 cut(s) 165, 178
MboII GAAGA 5 cut(s) 45, 131, 173, 184, 438
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 2 cut(s) 93, 235
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 155, 165, 377, 381, 522
Mox20I TGGCCA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 174
MseI TTAA 3 cut(s) 63, 200, 532
Msp20I TGGCCA 1 cut(s) 174
MspI CCGG 3 cut(s) 282, 338, 410
MspR9I CCNGG 2 cut(s) 282, 283
MvnI CGCG 2 cut(s) 131, 159
MwoI GCNNNNNNNGC 1 cut(s) 401
NciI CCSGG 2 cut(s) 282, 283
NdeII GATC 2 cut(s) 165, 178
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 4 cut(s) 73, 85, 119, 268
PagI TCATGA 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 519
PinAI ACCGGT 1 cut(s) 337
PkrI GCNGC 2 cut(s) 406, 478
PleI GAGTC 2 cut(s) 92, 234
PpsI GAGTC 2 cut(s) 92, 234
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 178
PsyI GACNNNGTC 1 cut(s) 519
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 3 cut(s) 63, 200, 532
SatI GCNGC 2 cut(s) 405, 477
Sau3AI GATC 2 cut(s) 165, 178
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 2 cut(s) 93, 235
ScrFI CCNGG 2 cut(s) 282, 283
SduI GDGCHC 1 cut(s) 129
SetI ASST 7 cut(s) 129, 200, 363, 397, 472, 502, 523
SfaNI GCATC 2 cut(s) 208, 283
SinI GGWCC 1 cut(s) 211
SmaI CCCGGG 1 cut(s) 283
Sse9I AATT 1 cut(s) 94
SsiI CCGC 1 cut(s) 344
SspMI CTAG 2 cut(s) 231, 417
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 280, 281
TaiI ACGT 3 cut(s) 363, 502, 523
TaqI TCGA 2 cut(s) 54, 514
TasI AATT 1 cut(s) 94
TatI WGTACW 1 cut(s) 49
Tru1I TTAA 3 cut(s) 63, 200, 532
Tru9I TTAA 3 cut(s) 63, 200, 532
TseFI GTSAC 4 cut(s) 73, 85, 119, 268
TseI GCWGC 2 cut(s) 404, 476
Tsp45I GTSAC 4 cut(s) 73, 85, 119, 268
TspMI CCCGGG 1 cut(s) 281
Tth111I GACNNNGTC 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 211
XmaI CCCGGG 1 cut(s) 281
XspI CTAG 2 cut(s) 231, 417
ZraI GACGTC 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.