RLG00000026558

CEN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007031
Physical Location & Seq
Forward (+)
3827344 .. 3828204
861 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026558

Sequence Viewer

Length: 525 bp
ATGTCGAGGATGATGGAGACCCTAACTCTTGGAAGAGTGGTAGGAGAGGTTGTGGACATGTTCACCCCAACTGTGAAAATGGATGTAATTTACAGTAGCAACAAACAAGTTTCTAATGGCCATGAGCTCATGCCTTCTGTTATTACTACCAAGCCTCGCGTCGACATCGGAGGTGAAGATATGAGGGCTGCTTATACATTAATTATGACAGATCCTGATTTCCCAAGCCCCAGTGATCCATACTTGAGAGAACATCTCCACTGGTTGGTGACAGACATTCCTGGTACCACTGATGTCTCCTTTGGAAGAGAAGTTGTGGAGTATCAAACTCCGAAGCCGGTGGTGGGGATTCACCGTTACGTGTTTCTGCTGTTCAAGCAGGCCAGAGGAAGGCAGACTGTGAGAGTTCCGGCATCACGGGACAACTTCAACACAAGACAATTTTCACAAGAGAACGATCTTGGCCTGCCTGTGGCTGCTGTCTACTTCAATGCACAAAGAGAAACTGCTGCCAGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

175

Amino Acids

19.78

Weight (kDa)

8.04

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 52 - 161 1.1e-12 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 265
AccI GTMKAC 2 cut(s) 162, 483
AccII CGCG 1 cut(s) 159
AclWI GGATC 2 cut(s) 206, 230
AcoI YGGCCR 1 cut(s) 118
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
AflIII ACRYGT 2 cut(s) 57, 360
AgsI TTSAA 3 cut(s) 376, 430, 490
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 2 cut(s) 11, 301
AlwI GGATC 2 cut(s) 206, 230
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 3 cut(s) 118, 381, 463
ApeKI GCWGC 3 cut(s) 188, 476, 509
AseI ATTAAT 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 284
AsuHPI GGTGA 4 cut(s) 55, 185, 280, 344
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 175, 463, 496
BccI CCATC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 11, 301
BisI GCNGC 3 cut(s) 189, 477, 510
BlsI GCNGC 3 cut(s) 190, 478, 511
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 422
BmuI ACTGGG 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpuEI CTTGAG 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 231, 266
BseBI CCWGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 15, 88
BseLI CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
BseNI ACTGG 2 cut(s) 231, 266
BseXI GCAGC 3 cut(s) 175, 463, 496
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 120, 383, 465
BshNI GGYRCC 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 338, 410
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
BsmAI GTCTC 2 cut(s) 11, 301
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 3 cut(s) 120, 383, 465
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 211, 235, 457
BspANI GGCC 3 cut(s) 120, 383, 465
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 2 cut(s) 206, 230
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 2 cut(s) 231, 266
BssAI RCCGGY 1 cut(s) 337
BssMI GATC 3 cut(s) 211, 235, 457
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 4 cut(s) 73, 95, 356, 400
Bst6I CTCTTC 2 cut(s) 28, 301
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 381, 467
BstF5I GGATG 2 cut(s) 15, 88
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 3 cut(s) 214, 238, 460
BstMAI GTCTC 2 cut(s) 11, 301
BstMBI GATC 3 cut(s) 211, 235, 457
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 280
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 175, 463, 496
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 120, 383, 465
BtsCI GGATG 2 cut(s) 15, 88
BtsIMutI CAGTG 3 cut(s) 238, 259, 288
Cac8I GCNNGC 2 cut(s) 381, 467
CaiI CAGNNNCTG 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 337
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 285
CviAII CATG 3 cut(s) 58, 122, 130
CviJI RGCY 9 cut(s) 120, 127, 154, 188, 228, 337, 383, 465, 476
CviKI_1 RGCY 9 cut(s) 120, 127, 154, 188, 228, 337, 383, 465, 476
CviQI GTAC 1 cut(s) 285
DpnI GATC 3 cut(s) 213, 237, 459
DpnII GATC 3 cut(s) 211, 235, 457
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 28, 301
EarI CTCTTC 2 cut(s) 28, 301
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 3 cut(s) 61, 125, 133
FaiI YATR 7 cut(s) 59, 123, 131, 182, 195, 206, 241
FaqI GGGAC 1 cut(s) 434
FatI CATG 3 cut(s) 57, 121, 129
FblI GTMKAC 2 cut(s) 162, 483
Fnu4HI GCNGC 3 cut(s) 189, 477, 510
FokI GGATG 2 cut(s) 22, 95
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 189, 477, 510
GluI GCNGC 3 cut(s) 189, 477, 510
HaeIII GGCC 3 cut(s) 120, 383, 465
HapII CCGG 2 cut(s) 338, 410
HgaI GACGC 1 cut(s) 148
Hin1II CATG 3 cut(s) 61, 125, 133
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 349
HpaII CCGG 2 cut(s) 338, 410
HphI GGTGA 4 cut(s) 55, 185, 280, 344
Hpy166II GTNNAC 4 cut(s) 55, 63, 163, 484
Hpy188I TCNGA 2 cut(s) 170, 333
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 4 cut(s) 55, 63, 163, 484
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 144, 384
HpyCH4III ACNGT 4 cut(s) 73, 95, 356, 400
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 3 cut(s) 61, 125, 133
KpnI GGTACC 1 cut(s) 288
Kzo9I GATC 3 cut(s) 211, 235, 457
Lsp1109I GCAGC 3 cut(s) 175, 463, 496
LweI GCATC 1 cut(s) 422
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 268, 356
MalI GATC 3 cut(s) 213, 237, 459
MboI GATC 3 cut(s) 211, 235, 457
MboII GAAGA 3 cut(s) 45, 188, 318
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 3 cut(s) 87, 201, 440
MluNI TGGCCA 1 cut(s) 120
MnlI CCTC 5 cut(s) 40, 164, 165, 177, 380
Mox20I TGGCCA 1 cut(s) 120
MscI TGGCCA 1 cut(s) 120
MseI TTAA 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 120
MspI CCGG 2 cut(s) 338, 410
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 3 cut(s) 211, 235, 457
NlaIII CATG 3 cut(s) 61, 125, 133
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 61
PciI ACATGT 1 cut(s) 57
PfeI GAWTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 3 cut(s) 190, 478, 511
Ppu21I YACGTR 1 cut(s) 361
PscI ACATGT 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SacI GAGCTC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 3 cut(s) 189, 477, 510
Sau3AI GATC 3 cut(s) 211, 235, 457
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 129
SetI ASST 4 cut(s) 51, 129, 175, 363
SfaNI GCATC 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 3 cut(s) 87, 201, 440
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 4 cut(s) 73, 95, 356, 400
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 5, 162
TasI AATT 3 cut(s) 87, 201, 440
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 3 cut(s) 238, 266, 295
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 3 cut(s) 188, 476, 509
Tsp45I GTSAC 1 cut(s) 268
TspRI CASTG 3 cut(s) 238, 266, 295
Van91I CCANNNNNTGG 1 cut(s) 265
VspI ATTAAT 1 cut(s) 200
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 162, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.