Rw6G023700

CEN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007031
Physical Location & Seq
Forward (+)
46338731 .. 46339258
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023700.1

Sequence Viewer

Length: 495 bp
ATGATGGAAACCCTAACTATTGGAAGAGTGGTAGGAGAGGTTGTGGACATGTTCACGCCAATTGTGAAAATGGATGTAATTTACAGTTGCAACAAACAAGTTTCTAATGGCCATGAGATCATGCCTTCTGTCATTACTGCTAAGCCTCGCGTCGACATCAGAGATGAAGATACGAGCGCTGCTGATACATTAATTATGACAAACCCTGATTTCCCAAGCCCCAGCGATCCATACTTGAGAGAACATCTCCACTGGTGGGTGACAGACATTCCTGGAATCACTTATGTCTCCTTTGGAAGAGAAGTTATGGAGTATAAAACTCCCAAATCGGTGGTGGGGATTCACCGTTATGTGTTTCTATTAGTTCTGGCATCGCGGGACAACTTTAACACAAGACAATTTTCACAAGACAATGGTCTTGACCTGCTTGTGGCTGTTATCTACTTCAACACACAAAGAGAAATTGGTGCCAGAAGAAGATCAGTAATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

164

Amino Acids

18.74

Weight (kDa)

5.54

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 59 - 131 1.9e-06 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 153
AccII CGCG 2 cut(s) 150, 376
AciI CCGC 1 cut(s) 376
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 109
AfeI AGCGCT 1 cut(s) 178
AfiI CCNNNNNNNGG 2 cut(s) 256, 430
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 1 cut(s) 448
AjnI CCWGG 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 178
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 179
AseI ATTAAT 1 cut(s) 191
AspLEI GCGC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 271, 335
BalI TGGCCA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 467
BbvI GCAGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 432
BisI GCNGC 1 cut(s) 180
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 380
BoxI GACNNNNGTC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 231, 263
Bpu1102I GCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 430
Bse1I ACTGG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 256, 430
BseNI ACTGG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 221
Bsh1236I CGCG 2 cut(s) 150, 376
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 467
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 256, 430
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 3 cut(s) 117, 226, 479
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 1 cut(s) 376
BspANI GGCC 1 cut(s) 111
BspFNI CGCG 2 cut(s) 150, 376
BspLI GGNNCC 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 432
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 467
BsrI ACTGG 1 cut(s) 257
BssMI GATC 3 cut(s) 117, 226, 479
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 86, 347
Bst6I CTCTTC 2 cut(s) 19, 292
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 2 cut(s) 150, 376
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 3 cut(s) 120, 229, 482
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 3 cut(s) 117, 226, 479
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 1 cut(s) 52
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 271
BstUI CGCG 2 cut(s) 150, 376
BstV1I GCAGC 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 331
BsuRI GGCC 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 432
CfoI GCGC 1 cut(s) 179
CseI GACGC 1 cut(s) 139
CviAII CATG 3 cut(s) 49, 113, 121
CviJI RGCY 4 cut(s) 111, 145, 219, 434
CviKI_1 RGCY 4 cut(s) 111, 145, 219, 434
DdeI CTNAG 1 cut(s) 141
DpnI GATC 3 cut(s) 119, 228, 481
DpnII GATC 3 cut(s) 117, 226, 479
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 19, 292
EarI CTCTTC 2 cut(s) 19, 292
Eco47III AGCGCT 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 3 cut(s) 52, 116, 124
FaiI YATR 9 cut(s) 50, 114, 122, 197, 232, 285, 308, 315, 351
FaqI GGGAC 1 cut(s) 392
FatI CATG 3 cut(s) 48, 112, 120
FauI CCCGC 1 cut(s) 369
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 493
GlaI GCGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 1 cut(s) 111
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 179
Hin1II CATG 3 cut(s) 52, 116, 124
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 276, 340
HphI GGTGA 2 cut(s) 271, 335
Hpy166II GTNNAC 3 cut(s) 46, 54, 154
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 419
Hpy8I GTNNAC 3 cut(s) 46, 54, 154
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 2 cut(s) 86, 347
HpyCH4V TGCA 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 3 cut(s) 52, 116, 124
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 3 cut(s) 117, 226, 479
LpnPI CCDG 8 cut(s) 219, 235, 238, 258, 285, 353, 437, 484
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 380
MaeI CTAG 1 cut(s) 493
MaeIII GTNAC 1 cut(s) 259
MalI GATC 3 cut(s) 119, 228, 481
MboI GATC 3 cut(s) 117, 226, 479
MboII GAAGA 5 cut(s) 36, 179, 309, 486, 489
MfeI CAATTG 1 cut(s) 60
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 6 cut(s) 60, 78, 192, 398, 462, 486
MluNI TGGCCA 1 cut(s) 111
MnlI CCTC 2 cut(s) 31, 156
Mox20I TGGCCA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 111
MseI TTAA 2 cut(s) 191, 387
MslI CAYNNNNRTG 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 2 cut(s) 150, 376
NdeII GATC 3 cut(s) 117, 226, 479
NlaIII CATG 3 cut(s) 52, 116, 124
NlaIV GGNNCC 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 52
PciI ACATGT 1 cut(s) 48
PfeI GAWTC 2 cut(s) 276, 340
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 1 cut(s) 181
PscI ACATGT 1 cut(s) 48
PshAI GACNNNNGTC 1 cut(s) 414
PshBI ATTAAT 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 348
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 191, 387
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 117, 226, 479
ScrFI CCNGG 1 cut(s) 273
SetI ASST 2 cut(s) 42, 426
SfaNI GCATC 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 6 cut(s) 60, 78, 192, 398, 462, 486
SsiI CCGC 1 cut(s) 376
SspMI CTAG 1 cut(s) 493
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 86, 347
TaqI TCGA 1 cut(s) 153
TasI AATT 6 cut(s) 60, 78, 192, 398, 462, 486
TfiI GAWTC 2 cut(s) 276, 340
Tru1I TTAA 2 cut(s) 191, 387
Tru9I TTAA 2 cut(s) 191, 387
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 257
VspI ATTAAT 1 cut(s) 191
XceI RCATGY 1 cut(s) 52
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.