RchiOBHm_Chr6g0284341

CEN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007031
Physical Location & Seq
Forward (+)
47583816 .. 47584292
477 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25499

Sequence Viewer

Length: 477 bp
ATGGATGTAATTTACAGTTGCAACAAACAAGTATCTAATGGCCATGAGATCATGCCTTCTATCATTACTGCTAAGCCTCGCATCGACATCGGAGGTGAAGATATGAGCGCTGCTTATACATTGATTATGACAGACCCTGATTTCCCAAGCCCCAGTGATCCATACTTGAGAGAACATCTCCACCAGTTGGTGACAGACATTCCTGGTACCACTGATGTCTCCTTTGGAAGAGAAGTTGTGGAGTATGAAACTCTGAAACCGGTGGTGGGGATTCACCATTACGTGTTCTTGCTGTTCAAGCAAGCTAGAGGAAGGCAGACGGTGAGAGTTCTGGCATCGCGGGACAACTTTAACACAAGACAGTTTTCACAAGGGAATGGTCTTGGCCTGCTTGTAGCTGCTGTCTACTTCAATACACAAAGAGAGATTACTACCAGAAGAAGATTTGGAATTTTTGGAATTCAAATTAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

158

Amino Acids

17.89

Weight (kDa)

8.76

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 26 - 131 3.3e-09 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 340
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 2 cut(s) 450, 459
AfaI GTAC 1 cut(s) 208
AfeI AGCGCT 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 187, 266
AflIII ACRYGT 1 cut(s) 282
AgeI ACCGGT 1 cut(s) 259
AgsI TTSAA 3 cut(s) 298, 412, 464
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 305, 398
AluI AGCT 2 cut(s) 305, 398
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 137
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 2 cut(s) 40, 385
ApeKI GCWGC 2 cut(s) 110, 398
ApoI RAATTY 2 cut(s) 450, 459
AsiGI ACCGGT 1 cut(s) 259
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 110
AsuHPI GGTGA 4 cut(s) 107, 202, 266, 334
BalI TGGCCA 1 cut(s) 42
BanI GGYRCC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 97, 385
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 2 cut(s) 111, 399
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 2 cut(s) 112, 400
Bme1390I CCNGG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 2 cut(s) 90, 344
BmuI ACTGGG 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 162, 194
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 266
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 153, 184
BseBI CCWGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 187, 266
BseNI ACTGG 2 cut(s) 153, 184
BseXI GCAGC 2 cut(s) 97, 385
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 2 cut(s) 42, 387
BshNI GGYRCC 1 cut(s) 206
BshTI ACCGGT 1 cut(s) 259
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 187, 266
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 2 cut(s) 42, 387
Bsp143I GATC 2 cut(s) 48, 157
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 1 cut(s) 340
BspANI GGCC 2 cut(s) 42, 387
BspFNI CGCG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 2 cut(s) 153, 184
BssAI RCCGGY 1 cut(s) 259
BssMI GATC 2 cut(s) 48, 157
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 17, 322, 363
Bst6I CTCTTC 1 cut(s) 223
BstBAI YACGTR 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 303, 389
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 51, 160
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 48, 157
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 97, 385
BsuRI GGCC 2 cut(s) 42, 387
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 160, 210
Cac8I GCNNGC 2 cut(s) 303, 389
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 259
Csp6I GTAC 1 cut(s) 207
CspAI ACCGGT 1 cut(s) 259
CviAII CATG 2 cut(s) 44, 52
CviJI RGCY 6 cut(s) 42, 76, 150, 305, 387, 398
CviKI_1 RGCY 6 cut(s) 42, 76, 150, 305, 387, 398
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 50, 159
DpnII GATC 2 cut(s) 48, 157
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 47, 55
FaiI YATR 7 cut(s) 45, 53, 104, 117, 128, 163, 246
FaqI GGGAC 1 cut(s) 356
FatI CATG 2 cut(s) 43, 51
FauI CCCGC 1 cut(s) 333
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 111, 399
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 111, 399
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 111, 399
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 42, 387
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 47, 55
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 260
HphI GGTGA 4 cut(s) 107, 202, 266, 334
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 92, 255
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 66, 306
HpyCH4III ACNGT 3 cut(s) 17, 322, 363
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 2 cut(s) 47, 55
HspAI GCGC 1 cut(s) 108
KpnI GGTACC 1 cut(s) 210
Kzo9I GATC 2 cut(s) 48, 157
LpnPI CCDG 9 cut(s) 150, 166, 189, 197, 216, 273, 317, 401, 448
Lsp1109I GCAGC 2 cut(s) 97, 385
LweI GCATC 2 cut(s) 90, 344
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 50, 159
MboI GATC 2 cut(s) 48, 157
MboII GAAGA 4 cut(s) 110, 240, 450, 453
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 4 cut(s) 9, 450, 459, 465
MluNI TGGCCA 1 cut(s) 42
MnlI CCTC 3 cut(s) 86, 87, 302
Mox20I TGGCCA 1 cut(s) 42
MscI TGGCCA 1 cut(s) 42
MseI TTAA 2 cut(s) 351, 468
Msp20I TGGCCA 1 cut(s) 42
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeII GATC 2 cut(s) 48, 157
NlaIII CATG 2 cut(s) 47, 55
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 2 cut(s) 112, 400
Ppu21I YACGTR 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 351, 468
SatI GCNGC 2 cut(s) 111, 399
Sau3AI GATC 2 cut(s) 48, 157
ScrFI CCNGG 1 cut(s) 204
SetI ASST 4 cut(s) 97, 285, 307, 400
SfaNI GCATC 2 cut(s) 90, 344
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 4 cut(s) 9, 450, 459, 465
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 3 cut(s) 17, 322, 363
TaiI ACGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 84
TasI AATT 4 cut(s) 9, 450, 459, 465
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 351, 468
Tru9I TTAA 2 cut(s) 351, 468
TscAI CASTG 2 cut(s) 160, 217
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 2 cut(s) 110, 398
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 261
TspRI CASTG 2 cut(s) 160, 217
Van91I CCANNNNNTGG 1 cut(s) 187
XapI RAATTY 2 cut(s) 450, 459
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.