Rh1AG416900

CEN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0007031
Physical Location & Seq
Reverse (-)
64892809 .. 64893668
860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG416900.1

Sequence Viewer

Length: 528 bp
ATGTCGAGGATGATGGAGACCCTAACTCTTGGAAGAGTGGTAGGAGAGGTTGTGGACATGTTCACCCCAACTGTGAAAATGGATGTAATTTACAGTAGCAACAAACAAGTTTCTAATGGCCATGAGCTCATGCCTTCTGTCATTACTGCTAAGCCTCGCGTCGACATCGGAGGTGAAGATATGAGGGCTGCTTATACATTAGTTATGACAGATCCTGATTTCCCAAGCCCCAGTGATCCATACTTGAGAGAACATCTCCACTGGTTGTTGGTGATAGACATTCCTGGTACCACTGATGTCTCCTTTGGAAGAGAAGTTGTGGAGTATGAAACTCCGATACCGGTGGTGGGGATTCACCGTTACGTGTTTCTGCTGTTCAAGCAGGCCAGAGGAAGGCAGACGGTGAGAGTTCCAGCGTCACGGGACAACTTCAACACAAGACAATTTTCACAAGAGAATGGTCTTGGCCTGCCTGTGGCTGCTGTCTACTTCAATGCACAAAGAGAAACTGCTGCCAGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

175

Amino Acids

19.79

Weight (kDa)

6.92

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 60 - 163 4.3e-10 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 2 cut(s) 162, 486
AccII CGCG 1 cut(s) 159
AclWI GGATC 2 cut(s) 206, 230
AcoI YGGCCR 1 cut(s) 118
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 3 cut(s) 347, 393, 475
AflIII ACRYGT 2 cut(s) 57, 363
AgeI ACCGGT 1 cut(s) 340
AgsI TTSAA 3 cut(s) 379, 433, 493
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 2 cut(s) 11, 304
AlwI GGATC 2 cut(s) 206, 230
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 3 cut(s) 118, 384, 466
ApeKI GCWGC 3 cut(s) 188, 479, 512
AsiGI ACCGGT 1 cut(s) 340
Asp718I GGTACC 1 cut(s) 287
AsuHPI GGTGA 5 cut(s) 55, 185, 283, 347, 415
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 175, 466, 499
BccI CCATC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 11, 304
BisI GCNGC 3 cut(s) 189, 480, 513
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 3 cut(s) 190, 481, 514
Bme1390I CCNGG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 240, 272
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 364
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 393, 475
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 2 cut(s) 231, 266
BseBI CCWGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 15, 88
BseLI CCNNNNNNNGG 3 cut(s) 347, 393, 475
BseNI ACTGG 2 cut(s) 231, 266
BseXI GCAGC 3 cut(s) 175, 466, 499
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 120, 386, 468
BshNI GGYRCC 1 cut(s) 287
BshTI ACCGGT 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 3 cut(s) 347, 393, 475
BsmAI GTCTC 2 cut(s) 11, 304
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 3 cut(s) 120, 386, 468
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 211, 235
Bsp1720I GCTNAGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 120, 386, 468
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 2 cut(s) 206, 230
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 2 cut(s) 231, 266
BssAI RCCGGY 1 cut(s) 340
BssMI GATC 2 cut(s) 211, 235
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 4 cut(s) 73, 95, 359, 403
Bst6I CTCTTC 2 cut(s) 28, 304
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 384, 470
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 2 cut(s) 15, 88
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 2 cut(s) 214, 238
BstMAI GTCTC 2 cut(s) 11, 304
BstMBI GATC 2 cut(s) 211, 235
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 283
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 175, 466, 499
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 120, 386, 468
BtsCI GGATG 2 cut(s) 15, 88
BtsIMutI CAGTG 3 cut(s) 238, 259, 291
Cac8I GCNNGC 2 cut(s) 384, 470
CaiI CAGNNNCTG 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 340
CseI GACGC 2 cut(s) 148, 405
Csp6I GTAC 1 cut(s) 288
CspAI ACCGGT 1 cut(s) 340
CviAII CATG 3 cut(s) 58, 122, 130
CviJI RGCY 8 cut(s) 120, 127, 154, 188, 228, 386, 468, 479
CviKI_1 RGCY 8 cut(s) 120, 127, 154, 188, 228, 386, 468, 479
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 213, 237
DpnII GATC 2 cut(s) 211, 235
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 28, 304
EarI CTCTTC 2 cut(s) 28, 304
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 3 cut(s) 61, 125, 133
FaiI YATR 8 cut(s) 59, 123, 131, 182, 195, 206, 241, 327
FaqI GGGAC 1 cut(s) 437
FatI CATG 3 cut(s) 57, 121, 129
FblI GTMKAC 2 cut(s) 162, 486
Fnu4HI GCNGC 3 cut(s) 189, 480, 513
FokI GGATG 2 cut(s) 22, 95
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 189, 480, 513
GluI GCNGC 3 cut(s) 189, 480, 513
HaeIII GGCC 3 cut(s) 120, 386, 468
HapII CCGG 1 cut(s) 341
HgaI GACGC 2 cut(s) 148, 405
Hin1II CATG 3 cut(s) 61, 125, 133
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 352
HpaII CCGG 1 cut(s) 341
HphI GGTGA 5 cut(s) 55, 185, 283, 347, 415
Hpy166II GTNNAC 4 cut(s) 55, 63, 163, 487
Hpy188I TCNGA 2 cut(s) 170, 336
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 4 cut(s) 55, 63, 163, 487
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 144, 387
HpyCH4III ACNGT 4 cut(s) 73, 95, 359, 403
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 1 cut(s) 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 3 cut(s) 61, 125, 133
KpnI GGTACC 1 cut(s) 291
Kzo9I GATC 2 cut(s) 211, 235
Lsp1109I GCAGC 3 cut(s) 175, 466, 499
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 359, 417
MalI GATC 2 cut(s) 213, 237
MboI GATC 2 cut(s) 211, 235
MboII GAAGA 3 cut(s) 45, 188, 321
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 2 cut(s) 87, 443
MluNI TGGCCA 1 cut(s) 120
MnlI CCTC 5 cut(s) 40, 164, 165, 177, 383
Mox20I TGGCCA 1 cut(s) 120
MscI TGGCCA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 120
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 379
NdeII GATC 2 cut(s) 211, 235
NlaIII CATG 3 cut(s) 61, 125, 133
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 417
NspI RCATGY 1 cut(s) 61
PciI ACATGT 1 cut(s) 57
PfeI GAWTC 1 cut(s) 352
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 3 cut(s) 190, 481, 514
Ppu21I YACGTR 1 cut(s) 364
PscI ACATGT 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SacI GAGCTC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 3 cut(s) 189, 480, 513
Sau3AI GATC 2 cut(s) 211, 235
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 129
SetI ASST 4 cut(s) 51, 129, 175, 366
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 2 cut(s) 87, 443
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 4 cut(s) 73, 95, 359, 403
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 5, 162
TasI AATT 2 cut(s) 87, 443
TfiI GAWTC 1 cut(s) 352
TscAI CASTG 3 cut(s) 238, 266, 298
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 3 cut(s) 188, 479, 512
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 1 cut(s) 342
TspRI CASTG 3 cut(s) 238, 266, 298
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 162, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.