Rh6BG275800

CEN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007031
Physical Location & Seq
Forward (+)
49684365 .. 49684667
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG275800.1

Sequence Viewer

Length: 303 bp
ATGGATGTAATTTACAGTTGCAACAAACAAGTTTCTAATGGCCATGAGATCATGCCTTCTGTCATTACTGCTAAGCCTCGCGTCGACATCAGAGATGAAGATATGAGCGCTGCTGATACATTAATTATGACAGACCCTGATTTCCCAAGCCCTAGTGATCCATACTTGAGAGAACATCTCCACTGGTTGGTGACAGACATTCCTGGAATCACTGATGTCTCCTTTGGAAGAGAAGTTGTGGAGTATAAAACTCCGAAATCGGTGGTGGGGATTCACCGTTATGTGTTCCTGTTGTTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

100

Amino Acids

11.39

Weight (kDa)

5.16

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 40 - 99 3.2e-08 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 81
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 40
AfeI AGCGCT 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 137
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 110
AseI ATTAAT 1 cut(s) 122
AspLEI GCGC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 202, 266
BalI TGGCCA 1 cut(s) 42
BbvI GCAGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 162, 194
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 223
BsnI GGCC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 48, 157
Bsp1720I GCTNAGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 42
BspFNI CGCG 1 cut(s) 81
BspPI GGATC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 188
BssMI GATC 2 cut(s) 48, 157
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 17, 278
Bst6I CTCTTC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 51, 160
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 48, 157
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 181, 210
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 1 cut(s) 110
CseI GACGC 1 cut(s) 70
CviAII CATG 2 cut(s) 44, 52
CviJI RGCY 3 cut(s) 42, 76, 150
CviKI_1 RGCY 3 cut(s) 42, 76, 150
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 50, 159
DpnII GATC 2 cut(s) 48, 157
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 47, 55
FaiI YATR 7 cut(s) 45, 53, 104, 128, 163, 246, 282
FatI CATG 2 cut(s) 43, 51
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 42
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 47, 55
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 207, 271
HphI GGTGA 2 cut(s) 202, 266
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 92, 255
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 17, 278
HpyCH4V TGCA 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 2 cut(s) 47, 55
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 48, 157
LpnPI CCDG 4 cut(s) 150, 169, 189, 216
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 50, 159
MboI GATC 2 cut(s) 48, 157
MboII GAAGA 2 cut(s) 110, 240
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 2 cut(s) 9, 123
MluNI TGGCCA 1 cut(s) 42
MnlI CCTC 1 cut(s) 87
Mox20I TGGCCA 1 cut(s) 42
MscI TGGCCA 1 cut(s) 42
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 81
NdeII GATC 2 cut(s) 48, 157
NlaIII CATG 2 cut(s) 47, 55
NmuCI GTSAC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 207, 271
PflMI CCANNNNNTGG 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 279
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 48, 157
ScrFI CCNGG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 9, 123
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 17, 278
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 9, 123
TfiI GAWTC 2 cut(s) 207, 271
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 2 cut(s) 188, 217
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 2 cut(s) 188, 217
Van91I CCANNNNNTGG 1 cut(s) 187
VspI ATTAAT 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.