Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007031

Physical Location & Seq

Genomic Coordinates Reverse (-)

25135868 .. 25136748

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCAAGGACGATGGAGCCATTAACTCTTGGAAGAGTGATAGGAGAGGTTGTGGACATCTTCACCCCAACTGTGAACCTGAATGTAGTTTACAACCCAAACAGACAAGTTGCTAATGGACATGAGCTCATGCCTTCTGTAATTGCTGCTAAACCTCGCGTCGAGATCGGAGGTGAAGATATGAGGATTGCTTATACCTTAATAATGACAGACCCAGATTTTCCAAGCCCCAGCGAACCATACCTGAGAGAACATCTCCACTGGATGGTCACAGACATTCCTGGCACCACTGATGTCTCATTTGGAAAAGAGATTGTCGAGTATGAAATTCCACGGCCGGTCGTAGGCATTCACAGGTACGTATTCCTGCTATTCAAGCAGAGAGGAAGACAAACAGTGAGAGCTCCAGCTTCCAGAGACAATTTCAATACCAGGATATTCTCGCAGGAGAATGGTCTCGGGCTGCCTGTGGCTGCCGTCTACTTCAATGCGCAACGGGCAACTGCAGCTAGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

174

Amino Acids

19.57

Weight (kDa)

9.09

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62040
fragaria_vesca	FvH4_7g29150 FvH4_7g29150
malus_domestica	MD01G1198400.v1.1 MD07G1265900.v1.1
prunus_persica	Prupe.2G291900_v2.0.a1
pyrus_communis	pycom01g20860 pycom07g24410
rosa_chinensis	RchiOBHm_Chr1g0376941 RchiOBHm_Chr6g0284341
rosa_laevigata	RLG00000012749 RLG00000026558
rosa_multiflora	Rmu_ssc0000155.1_g000037
rosa_roxburghii	Rroxscaffold_4G00281620
rosa_rugosa	Rorug01G0399600 Rorug06G0162700
rosa_samantha	Rh1AG416900 Rh1BG376300 Rh1CG390100 Rh1DG406900 Rh6BG275800 Rh6BG275900 Rh6DG270500
rosa_wichuraiana	Rw1G036580 Rw6G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	265, 344
AgsI	TTSAA	3 cut(s)	376, 427, 487
AjnI	CCWGG	2 cut(s)	280, 431
AluBI	AGCT	4 cut(s)	127, 404, 410, 509
AluI	AGCT	4 cut(s)	127, 404, 410, 509
Alw21I	GWGCWC	2 cut(s)	129, 406
Alw26I	GTCTC	3 cut(s)	301, 411, 461
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	4 cut(s)	146, 463, 473, 506
ApoI	RAATTY	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	493
AsuHPI	GGTGA	2 cut(s)	55, 185
AvaI	CYCGRG	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	2 cut(s)	129, 406
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	2 cut(s)	129, 406
BbvI	GCAGC	4 cut(s)	133, 450, 460, 518
BccI	CCATC	2 cut(s)	7, 259
BceAI	ACGGC	2 cut(s)	350, 461
BciT130I	CCWGG	2 cut(s)	282, 433
BcoDI	GTCTC	3 cut(s)	301, 411, 461
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	4 cut(s)	147, 464, 474, 507
BlsI	GCNGC	4 cut(s)	148, 465, 475, 508
Bme1390I	CCNGG	2 cut(s)	282, 433
BmeT110I	CYCGRG	1 cut(s)	458
BmiI	GGNNCC	2 cut(s)	18, 286
BmrFI	CCNGG	2 cut(s)	282, 433
BpiI	GAAGAC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpmI	CTGGAG	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 344
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	282, 433
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	265, 344
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	266
BseX3I	CGGCCG	1 cut(s)	335
BseXI	GCAGC	4 cut(s)	133, 450, 460, 518
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	2 cut(s)	338, 342
BshFI	GGCC	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	2 cut(s)	338, 342
BsiHKAI	GWGCWC	2 cut(s)	129, 406
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	265, 344
BsmAI	GTCTC	3 cut(s)	301, 411, 461
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	461
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	129, 406
Bsp143I	GATC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	18, 286
BspMAI	CTGCAG	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	282, 433
Bst4CI	ACNGT	2 cut(s)	73, 397
Bst6I	CTCTTC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	361
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	3 cut(s)	301, 411, 461
BstMBI	GATC	1 cut(s)	165
BstMCI	CGRYCG	2 cut(s)	338, 342
BstMWI	GCNNNNNNNGC	3 cut(s)	376, 497, 506
BstNI	CCWGG	2 cut(s)	282, 433
BstSCI	CCNGG	2 cut(s)	280, 431
BstSFI	CTRYAG	1 cut(s)	504
BstSNI	TACGTA	1 cut(s)	361
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	133, 450, 460, 518
BstV2I	GAAGAC	1 cut(s)	394
BstZI	CGGCCG	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	259, 288, 402
CfoI	GCGC	1 cut(s)	493
Cfr10I	RCCGGY	1 cut(s)	337
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	122, 130
CviJI	RGCY	9 cut(s)	19, 127, 228, 337, 404, 410, 463, 473, 509
CviKI_1	RGCY	9 cut(s)	19, 127, 228, 337, 404, 410, 463, 473, 509
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	335
EagI	CGGCCG	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Ecl136II	GAGCTC	2 cut(s)	127, 404
EclXI	CGGCCG	1 cut(s)	335
Eco105I	TACGTA	1 cut(s)	361
Eco24I	GRGCYC	2 cut(s)	129, 406
Eco31I	GGTCTC	1 cut(s)	461
Eco52I	CGGCCG	1 cut(s)	335
Eco53kI	GAGCTC	2 cut(s)	127, 404
Eco88I	CYCGRG	1 cut(s)	458
EcoICRI	GAGCTC	2 cut(s)	127, 404
EcoRII	CCWGG	2 cut(s)	280, 431
EcoT38I	GRGCYC	2 cut(s)	129, 406
FaeI	CATG	2 cut(s)	125, 133
FaiI	YATR	6 cut(s)	123, 131, 182, 195, 241, 324
FatI	CATG	2 cut(s)	121, 129
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	147, 464, 474, 507
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	2 cut(s)	129, 406
Fsp4HI	GCNGC	4 cut(s)	147, 464, 474, 507
FspBI	CTAG	1 cut(s)	510
FspI	TGCGCA	1 cut(s)	492
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	4 cut(s)	147, 464, 474, 507
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	2 cut(s)	125, 133
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	55, 185
Hpy166II	GTNNAC	4 cut(s)	55, 76, 91, 481
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	163, 414
Hpy8I	GTNNAC	4 cut(s)	55, 76, 91, 481
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	2 cut(s)	73, 397
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	1 cut(s)	506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	376, 497, 506
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	125, 133
HspAI	GCGC	1 cut(s)	491
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	16, 409
Lsp1109I	GCAGC	4 cut(s)	133, 450, 460, 518
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	4 cut(s)	45, 52, 188, 399
MhlI	GDGCHC	2 cut(s)	129, 406
MluCI	AATT	3 cut(s)	141, 327, 421
MnlI	CCTC	5 cut(s)	40, 164, 165, 177, 377
MseI	TTAA	2 cut(s)	23, 200
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	2 cut(s)	282, 433
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	2 cut(s)	282, 433
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	376, 497, 506
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	2 cut(s)	125, 133
NlaIV	GGNNCC	2 cut(s)	18, 286
NmuCI	GTSAC	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	492
PctI	GAATGC	1 cut(s)	348
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	4 cut(s)	148, 465, 475, 508
Ppu21I	YACGTR	1 cut(s)	361
Psp124BI	GAGCTC	2 cut(s)	129, 406
Psp6I	CCWGG	2 cut(s)	280, 431
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	280, 431
PspN4I	GGNNCC	2 cut(s)	18, 286
PstI	CTGCAG	1 cut(s)	508
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SacI	GAGCTC	2 cut(s)	129, 406
SaqAI	TTAA	2 cut(s)	23, 200
SatI	GCNGC	4 cut(s)	147, 464, 474, 507
Sau3AI	GATC	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	282, 433
SduI	GDGCHC	2 cut(s)	129, 406
SfcI	CTRYAG	1 cut(s)	504
SnaBI	TACGTA	1 cut(s)	361
Sse9I	AATT	3 cut(s)	141, 327, 421
SspMI	CTAG	1 cut(s)	510
SstI	GAGCTC	2 cut(s)	129, 406
StyD4I	CCNGG	2 cut(s)	280, 431
TaaI	ACNGT	2 cut(s)	73, 397
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	162, 318
TasI	AATT	3 cut(s)	141, 327, 421
Tru1I	TTAA	2 cut(s)	23, 200
Tru9I	TTAA	2 cut(s)	23, 200
TscAI	CASTG	3 cut(s)	266, 295, 402
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	4 cut(s)	146, 463, 473, 506
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	3 cut(s)	266, 295, 402
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.