RchiOBHm_Chr1g0376941

CEN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007031
Physical Location & Seq
Reverse (-)
64096217 .. 64097077
861 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60054

Sequence Viewer

Length: 525 bp
ATGTCGAGGATGATGGAGACCCTAACTCTTGGAAGAGTGGTAGGAGAGGTTGTGGACATGTTCACCCCAACTGTGAAAATGGATGTAATTTACAGTAGCAACAAACAAGTTTCTAATGGCCATGAGTTCATGCCTTCTGTCATTACTGCTAAGCCTCGCGTCGACATCGGAGGTGAAGATATGAGGGCTGCTTATACATTAGTTATGACCGATCCTGATTTCCCAAGCCCCAGTGATCCATACTTGAGAGAACATCTCCACTGGGTGGTGACAGACATTCCTGGTACCACTGATGTCTCCTTTGGAAGAGAAGTTGTGGAGTATGAAACTCCGAAACCGGTGGTGGGGATTCACCGTTACGTGTTTCTGCTGTTCAAGCAGGCCAGAGGAAGGCAGACGGTGAGAGTTCCGGCGTCACGGGACAACTTCAACACAAGACAATTTTCACAAGAGAATGGTCTTGGCCTGCCTGTGGCTGCTGTCTACTTCAATGCACAAAGAGAAACTGCTGCCAGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

174

Amino Acids

19.7

Weight (kDa)

8.04

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 61 - 162 6.4e-13 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 265
AccI GTMKAC 2 cut(s) 162, 483
AccII CGCG 1 cut(s) 159
AclWI GGATC 2 cut(s) 206, 230
AcoI YGGCCR 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 413
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
AflIII ACRYGT 2 cut(s) 57, 360
AgeI ACCGGT 1 cut(s) 337
AgsI TTSAA 3 cut(s) 376, 430, 490
AjnI CCWGG 1 cut(s) 280
Alw26I GTCTC 2 cut(s) 11, 301
AlwI GGATC 2 cut(s) 206, 230
AoxI GGCC 3 cut(s) 118, 381, 463
ApeKI GCWGC 3 cut(s) 188, 476, 509
AsiGI ACCGGT 1 cut(s) 337
Asp718I GGTACC 1 cut(s) 284
AsuHPI GGTGA 5 cut(s) 55, 185, 280, 344, 412
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 284
BbvI GCAGC 3 cut(s) 175, 463, 496
BccI CCATC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 11, 301
BisI GCNGC 3 cut(s) 189, 477, 510
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 3 cut(s) 190, 478, 511
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 2 cut(s) 225, 271
BmuI ACTGGG 2 cut(s) 225, 271
BplI GAGNNNNNCTC 2 cut(s) 240, 272
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 231, 266
BseBI CCWGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 15, 88
BseLI CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
BseNI ACTGG 2 cut(s) 231, 266
BseXI GCAGC 3 cut(s) 175, 463, 496
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 120, 383, 465
BshNI GGYRCC 1 cut(s) 284
BshTI ACCGGT 1 cut(s) 337
BsiSI CCGG 2 cut(s) 338, 410
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 4 cut(s) 265, 344, 390, 472
BsmAI GTCTC 2 cut(s) 11, 301
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 3 cut(s) 120, 383, 465
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 211, 235
Bsp1720I GCTNAGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 120, 383, 465
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 2 cut(s) 206, 230
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 2 cut(s) 231, 266
BssAI RCCGGY 1 cut(s) 337
BssMI GATC 2 cut(s) 211, 235
BssNI GRCGYC 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 4 cut(s) 73, 95, 356, 400
Bst6I CTCTTC 2 cut(s) 28, 301
BstACI GRCGYC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 381, 467
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 2 cut(s) 15, 88
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 2 cut(s) 214, 238
BstMAI GTCTC 2 cut(s) 11, 301
BstMBI GATC 2 cut(s) 211, 235
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 280
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 175, 463, 496
BsuRI GGCC 3 cut(s) 120, 383, 465
BtsCI GGATG 2 cut(s) 15, 88
BtsIMutI CAGTG 3 cut(s) 238, 259, 288
Cac8I GCNNGC 2 cut(s) 381, 467
Cfr10I RCCGGY 1 cut(s) 337
CseI GACGC 2 cut(s) 148, 402
Csp6I GTAC 1 cut(s) 285
CspAI ACCGGT 1 cut(s) 337
CviAII CATG 3 cut(s) 58, 122, 130
CviJI RGCY 7 cut(s) 120, 154, 188, 228, 383, 465, 476
CviKI_1 RGCY 7 cut(s) 120, 154, 188, 228, 383, 465, 476
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 213, 237
DpnII GATC 2 cut(s) 211, 235
DraIII CACNNNGTG 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 28, 301
EarI CTCTTC 2 cut(s) 28, 301
Eco31I GGTCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 3 cut(s) 61, 125, 133
FaiI YATR 8 cut(s) 59, 123, 131, 182, 195, 206, 241, 324
FaqI GGGAC 1 cut(s) 434
FatI CATG 3 cut(s) 57, 121, 129
FblI GTMKAC 2 cut(s) 162, 483
Fnu4HI GCNGC 3 cut(s) 189, 477, 510
FokI GGATG 2 cut(s) 22, 95
Fsp4HI GCNGC 3 cut(s) 189, 477, 510
GluI GCNGC 3 cut(s) 189, 477, 510
HaeIII GGCC 3 cut(s) 120, 383, 465
HapII CCGG 2 cut(s) 338, 410
HgaI GACGC 2 cut(s) 148, 402
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 3 cut(s) 61, 125, 133
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 349
HpaII CCGG 2 cut(s) 338, 410
HphI GGTGA 5 cut(s) 55, 185, 280, 344, 412
Hpy166II GTNNAC 4 cut(s) 55, 63, 163, 484
Hpy188I TCNGA 2 cut(s) 170, 333
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 4 cut(s) 55, 63, 163, 484
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 144, 384
HpyCH4III ACNGT 4 cut(s) 73, 95, 356, 400
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 3 cut(s) 61, 125, 133
KpnI GGTACC 1 cut(s) 288
Kzo9I GATC 2 cut(s) 211, 235
Lsp1109I GCAGC 3 cut(s) 175, 463, 496
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 3 cut(s) 268, 356, 414
MalI GATC 2 cut(s) 213, 237
MboI GATC 2 cut(s) 211, 235
MboII GAAGA 3 cut(s) 45, 188, 318
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 2 cut(s) 87, 440
MluNI TGGCCA 1 cut(s) 120
MnlI CCTC 5 cut(s) 40, 164, 165, 177, 380
Mox20I TGGCCA 1 cut(s) 120
MscI TGGCCA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 120
MspI CCGG 2 cut(s) 338, 410
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 2 cut(s) 211, 235
NlaIII CATG 3 cut(s) 61, 125, 133
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 268, 414
NspI RCATGY 1 cut(s) 61
PciI ACATGT 1 cut(s) 57
PfeI GAWTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 265
PinAI ACCGGT 1 cut(s) 337
PkrI GCNGC 3 cut(s) 190, 478, 511
Ppu21I YACGTR 1 cut(s) 361
PscI ACATGT 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 286
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 3 cut(s) 189, 477, 510
Sau3AI GATC 2 cut(s) 211, 235
ScrFI CCNGG 1 cut(s) 282
SetI ASST 3 cut(s) 51, 175, 363
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 2 cut(s) 87, 440
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 4 cut(s) 73, 95, 356, 400
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 5, 162
TaqII GACCGA 1 cut(s) 224
TasI AATT 2 cut(s) 87, 440
TfiI GAWTC 1 cut(s) 349
TscAI CASTG 3 cut(s) 238, 266, 295
TseFI GTSAC 2 cut(s) 268, 414
TseI GCWGC 3 cut(s) 188, 476, 509
Tsp45I GTSAC 2 cut(s) 268, 414
TspDTI ATGAA 2 cut(s) 118, 339
TspRI CASTG 3 cut(s) 238, 266, 295
Van91I CCANNNNNTGG 1 cut(s) 265
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 162, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.