RLG00000012749

CEN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007031
Physical Location & Seq
Reverse (-)
21981035 .. 21981403
369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012749

Sequence Viewer

Length: 369 bp
ATGGAAACCCTAACTCTTGGAAGAGTGGTAGGAGAGGTTGCGGACATGTTCACGCCAACTGTGAAAATGGATGTAATTTATAGTTGCAACAAACAAGTTTCTAATGGCCATGAGATCATGCCTTCTGTCATTACTGCTAAACCTCGCGTCGACATCGGAGATGAAGATATGAGCGCTGCTTATACATTAATTATGACAAACCCTGATTTCCCAAGCCCCAGTGATCTATACTTGAGAGAACATCTCCACTGGTTGGTGACAGACATTCCTGGAACCACTTATGTCTCCTTTGGAAGAGAAGTTATGGAGTATAAAACTCCCAAATCGGTGGTGGGGATTCACCGTTATGTGTTCCTGTTGTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

123

Amino Acids

13.8

Weight (kDa)

5.45

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 53 - 121 2.7e-08 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 253
AccI GTMKAC 1 cut(s) 150
AccII CGCG 1 cut(s) 147
AciI CCGC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 106
AfeI AGCGCT 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 253
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 289
Aor51HI AGCGCT 1 cut(s) 175
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 176
AseI ATTAAT 1 cut(s) 188
AspLEI GCGC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 268, 332
BalI TGGCCA 1 cut(s) 108
BbvI GCAGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 270
BmrI ACTGGG 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpuEI CTTGAG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 2 cut(s) 219, 254
BseBI CCWGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 219, 254
BseXI GCAGC 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 114, 223
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 108
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 274
BsrI ACTGG 2 cut(s) 219, 254
BssMI GATC 2 cut(s) 114, 223
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 61, 344
Bst6I CTCTTC 2 cut(s) 16, 289
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 2 cut(s) 117, 226
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 2 cut(s) 114, 223
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 268
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 328
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 226, 247
CfoI GCGC 1 cut(s) 176
CseI GACGC 1 cut(s) 136
CviAII CATG 3 cut(s) 46, 110, 118
CviJI RGCY 2 cut(s) 108, 216
CviKI_1 RGCY 2 cut(s) 108, 216
DpnI GATC 2 cut(s) 116, 225
DpnII GATC 2 cut(s) 114, 223
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 16, 289
EarI CTCTTC 2 cut(s) 16, 289
Eco47III AGCGCT 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 268
FaeI CATG 3 cut(s) 49, 113, 121
FatI CATG 3 cut(s) 45, 109, 117
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 177
GlaI GCGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 49, 113, 121
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 337
HphI GGTGA 2 cut(s) 268, 332
Hpy166II GTNNAC 2 cut(s) 51, 151
Hpy188I TCNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 51, 151
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 2 cut(s) 61, 344
HpyCH4V TGCA 1 cut(s) 87
Hsp92II CATG 3 cut(s) 49, 113, 121
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 2 cut(s) 114, 223
LpnPI CCDG 5 cut(s) 216, 232, 235, 255, 282
Lsp1109I GCAGC 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 116, 225
MboI GATC 2 cut(s) 114, 223
MboII GAAGA 3 cut(s) 33, 176, 306
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 2 cut(s) 75, 189
MluNI TGGCCA 1 cut(s) 108
MnlI CCTC 2 cut(s) 28, 153
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 147
NdeII GATC 2 cut(s) 114, 223
NlaIII CATG 3 cut(s) 49, 113, 121
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 49
PciI ACATGT 1 cut(s) 45
PfeI GAWTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 1 cut(s) 178
PscI ACATGT 1 cut(s) 45
PshBI ATTAAT 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 345
SalI GTCGAC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 114, 223
ScrFI CCNGG 1 cut(s) 270
SetI ASST 2 cut(s) 39, 145
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 2 cut(s) 75, 189
SsiI CCGC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 268
TaaI ACNGT 2 cut(s) 61, 344
TaqI TCGA 1 cut(s) 150
TasI AATT 2 cut(s) 75, 189
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 2 cut(s) 226, 254
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 226, 254
Van91I CCANNNNNTGG 1 cut(s) 253
VspI ATTAAT 1 cut(s) 188
XceI RCATGY 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.