Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007031

Physical Location & Seq

Genomic Coordinates Reverse (-)

19158165 .. 19159055

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20860.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCGAGGACGATCGAGCCATTGACTGTAGGAAGAGTGATAGGAGAAGTTGTCGACATCTTCACCCCAAGTGTGAAACTGAATGTAGTTTACAATCCAAACAAGCAAGTTGCTAATGGACATGAGCTCATGCCTTCTGTCATTGCTGCAAAACCTCGCGTCGACATCGGCGGTGACGATATGAGGACTGCTTATACCTTACTAATGACAGACCCAGATTATCCAGGCCCCAGCGATCCATACCTGAAAGAGCATCTCCACTGGATGGTCACAGACATTCCTGGGACCACTGATGTCTCATTTGGAAAAGAAACTGTGGAGTATGAAACTCCAAAGCCGGTCGTAGGCATTCACAGGTACGTGTTCTTGCTATTCAAGCAGAGAGGAAGACAAACAGTGAGAGCTCCAGCTTCCAGGGACAATTTCAACACCAGAAAATTCTCGCAGGAGAACGATCTTGGGCTGCCTGTGGCTGCCGTCTATTTCAATGCACAACGAGAAACTGCTGCTAGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

174

Amino Acids

19.49

Weight (kDa)

8.86

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62040
fragaria_vesca	FvH4_7g29150 FvH4_7g29150
malus_domestica	MD01G1198400.v1.1 MD07G1265900.v1.1
prunus_persica	Prupe.2G291900_v2.0.a1
pyrus_communis	pycom01g20860 pycom07g24410
rosa_chinensis	RchiOBHm_Chr1g0376941 RchiOBHm_Chr6g0284341
rosa_laevigata	RLG00000012749 RLG00000026558
rosa_multiflora	Rmu_ssc0000155.1_g000037
rosa_roxburghii	Rroxscaffold_4G00281620
rosa_rugosa	Rorug01G0399600 Rorug06G0162700
rosa_samantha	Rh1AG416900 Rh1BG376300 Rh1CG390100 Rh1DG406900 Rh6BG275800 Rh6BG275900 Rh6DG270500
rosa_wichuraiana	Rw1G036580 Rw6G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	2 cut(s)	54, 162
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	265, 344
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	376, 427, 487
AjnI	CCWGG	3 cut(s)	223, 280, 413
AluBI	AGCT	3 cut(s)	127, 404, 410
AluI	AGCT	3 cut(s)	127, 404, 410
Alw21I	GWGCWC	2 cut(s)	129, 406
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	4 cut(s)	146, 463, 473, 506
ApoI	RAATTY	1 cut(s)	437
AspS9I	GGNCC	2 cut(s)	227, 285
AsuHPI	GGTGA	2 cut(s)	55, 185
AvaII	GGWCC	1 cut(s)	285
BanII	GRGCYC	2 cut(s)	129, 406
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	2 cut(s)	129, 406
BbvI	GCAGC	4 cut(s)	133, 450, 460, 493
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	3 cut(s)	225, 282, 415
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	4 cut(s)	147, 464, 474, 507
BlsI	GCNGC	4 cut(s)	148, 465, 475, 508
Bme1390I	CCNGG	3 cut(s)	225, 282, 415
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	227, 285
BmiI	GGNNCC	2 cut(s)	229, 286
BmrFI	CCNGG	3 cut(s)	225, 282, 415
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	281, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 344
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	225, 282, 415
BseDI	CCNNGG	2 cut(s)	281, 414
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	265, 344
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	4 cut(s)	133, 450, 460, 493
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	2 cut(s)	15, 342
BshFI	GGCC	1 cut(s)	228
BsiEI	CGRYCG	2 cut(s)	15, 342
BsiHKAI	GWGCWC	2 cut(s)	129, 406
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	2 cut(s)	298, 431
BslI	CCNNNNNNNGG	2 cut(s)	265, 344
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	298, 431
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	129, 406
Bsp143I	GATC	3 cut(s)	12, 235, 454
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	229, 286
BspPI	GGATC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	281, 414
BssMI	GATC	3 cut(s)	12, 235, 454
Bst2UI	CCWGG	3 cut(s)	225, 282, 415
Bst4CI	ACNGT	3 cut(s)	28, 316, 397
Bst6I	CTCTTC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	15, 238, 457
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	3 cut(s)	12, 235, 454
BstMCI	CGRYCG	2 cut(s)	15, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	3 cut(s)	225, 282, 415
BstSCI	CCNGG	3 cut(s)	223, 280, 413
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	133, 450, 460, 493
BstV2I	GAAGAC	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	259, 288, 402
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	227, 285
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	122, 130
CviJI	RGCY	8 cut(s)	19, 127, 228, 337, 404, 410, 463, 473
CviKI_1	RGCY	8 cut(s)	19, 127, 228, 337, 404, 410, 463, 473
CviQI	GTAC	1 cut(s)	358
DpnI	GATC	3 cut(s)	14, 237, 456
DpnII	GATC	3 cut(s)	12, 235, 454
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Ecl136II	GAGCTC	2 cut(s)	127, 404
Eco24I	GRGCYC	2 cut(s)	129, 406
Eco47I	GGWCC	1 cut(s)	285
Eco53kI	GAGCTC	2 cut(s)	127, 404
EcoICRI	GAGCTC	2 cut(s)	127, 404
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	223, 280, 413
EcoT38I	GRGCYC	2 cut(s)	129, 406
FaeI	CATG	2 cut(s)	125, 133
FaiI	YATR	6 cut(s)	123, 131, 182, 195, 241, 324
FaqI	GGGAC	2 cut(s)	298, 431
FatI	CATG	2 cut(s)	121, 129
FblI	GTMKAC	2 cut(s)	54, 162
Fnu4HI	GCNGC	4 cut(s)	147, 464, 474, 507
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	2 cut(s)	129, 406
Fsp4HI	GCNGC	4 cut(s)	147, 464, 474, 507
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	4 cut(s)	147, 464, 474, 507
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	125, 133
HincII	GTYRAC	2 cut(s)	55, 163
HindII	GTYRAC	2 cut(s)	55, 163
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	55, 185
Hpy166II	GTNNAC	3 cut(s)	55, 91, 163
Hpy8I	GTNNAC	3 cut(s)	55, 91, 163
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	3 cut(s)	28, 316, 397
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	2 cut(s)	149, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	125, 133
Kzo9I	GATC	3 cut(s)	12, 235, 454
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	4 cut(s)	133, 450, 460, 493
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	173, 268
MalI	GATC	3 cut(s)	14, 237, 456
MboI	GATC	3 cut(s)	12, 235, 454
MboII	GAAGA	3 cut(s)	45, 52, 399
MhlI	GDGCHC	2 cut(s)	129, 406
MluCI	AATT	2 cut(s)	421, 437
MnlI	CCTC	3 cut(s)	165, 177, 377
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	3 cut(s)	225, 282, 415
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	3 cut(s)	225, 282, 415
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	3 cut(s)	12, 235, 454
NlaIII	CATG	2 cut(s)	125, 133
NlaIV	GGNNCC	2 cut(s)	229, 286
NmuCI	GTSAC	2 cut(s)	173, 268
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	348
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	4 cut(s)	148, 465, 475, 508
Ple19I	CGATCG	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	361
Psp124BI	GAGCTC	2 cut(s)	129, 406
Psp6I	CCWGG	3 cut(s)	223, 280, 413
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	3 cut(s)	223, 280, 413
PspN4I	GGNNCC	2 cut(s)	229, 286
PspPI	GGNCC	2 cut(s)	227, 285
PvuI	CGATCG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SacI	GAGCTC	2 cut(s)	129, 406
SalI	GTCGAC	2 cut(s)	53, 161
SatI	GCNGC	4 cut(s)	147, 464, 474, 507
Sau3AI	GATC	3 cut(s)	12, 235, 454
Sau96I	GGNCC	2 cut(s)	227, 285
ScrFI	CCNGG	3 cut(s)	225, 282, 415
SduI	GDGCHC	2 cut(s)	129, 406
SetI	ASST	8 cut(s)	129, 157, 200, 246, 359, 363, 406, 412
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	285
Sse9I	AATT	2 cut(s)	421, 437
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	510
SstI	GAGCTC	2 cut(s)	129, 406
StyD4I	CCNGG	3 cut(s)	223, 280, 413
TaaI	ACNGT	3 cut(s)	28, 316, 397
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	5, 15, 54, 162
TasI	AATT	2 cut(s)	421, 437
TscAI	CASTG	3 cut(s)	266, 295, 402
TseFI	GTSAC	2 cut(s)	173, 268
TseI	GCWGC	4 cut(s)	146, 463, 473, 506
Tsp45I	GTSAC	2 cut(s)	173, 268
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	3 cut(s)	266, 295, 402
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	437
XmiI	GTMKAC	2 cut(s)	54, 162
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.