FvH4_7g29150

CEN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007031
Physical Location & Seq
Reverse (-)
21541917 .. 21543431
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29150.t1

Sequence Viewer

Length: 528 bp
ATGTCAAGGATAATGGAGACCCTGACCCTTGGAAGAGTGGTAGGAGAGGTTGTGGACATGTTCACCCCATCTGTGAAAATGAATGTAGTTTACAGTAGCTGCAACAAACAAGTATCTAATGGCCACGAGATCATGCCTTCTGTCATTGCTGCTAAGCCTCGCGTCGACATCGGTGGTGAAGATATGAGGGCTGCTTATACATTGATTATGACAGACCCTGATTACCCAAGCCCCAGTGATCCATGCTTGAGAGAACATCTCCACTGGATGGTGACAGACATTCCTGGTACCACTGATGTCTCCTTTGGAAGAGAAGTTGTGGAGTATGAAACTCCAAAGCCGGTGGTGGGGATTCACCGGTACGTGTTTCTGTTGTTCCAGCAGACTAGAGGAAGGCAGACGGTGAGAGTTCCGGCTTCGCGGGACAACTTCAACACAAGAAAGTTTTCACAAGAGAATAGTCTTGGCCTGCCTGTGGCTGCTGTCTACTTCAATGCACAAAGAGAAACTGCAGCCAGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

176

Amino Acids

19.75

Weight (kDa)

8.62

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 62 - 163 6e-13 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 268
AccI GTMKAC 2 cut(s) 165, 486
AccII CGCG 2 cut(s) 162, 421
AciI CCGC 1 cut(s) 421
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 121
AfaI GTAC 2 cut(s) 289, 362
AfiI CCNNNNNNNGG 3 cut(s) 268, 347, 475
AflIII ACRYGT 2 cut(s) 57, 363
AgeI ACCGGT 1 cut(s) 357
AgsI TTSAA 2 cut(s) 433, 493
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw26I GTCTC 2 cut(s) 11, 304
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 2 cut(s) 99, 218
AoxI GGCC 2 cut(s) 121, 466
ApeKI GCWGC 5 cut(s) 99, 149, 191, 479, 512
AsiGI ACCGGT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 287
AsuHPI GGTGA 5 cut(s) 55, 188, 283, 347, 415
BalI TGGCCA 1 cut(s) 123
BanI GGYRCC 1 cut(s) 287
BauI CACGAG 1 cut(s) 125
BbvI GCAGC 5 cut(s) 86, 136, 178, 466, 524
BccI CCATC 2 cut(s) 76, 262
BciT130I CCWGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 11, 304
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 510
BisI GCNGC 5 cut(s) 100, 150, 192, 480, 513
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 5 cut(s) 101, 151, 193, 481, 514
Bme1390I CCNGG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 243, 275
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 364
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 357
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 347, 475
Bse118I RCCGGY 2 cut(s) 340, 357
Bse1I ACTGG 2 cut(s) 234, 269
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 3 cut(s) 268, 347, 475
BseMI GCAATG 1 cut(s) 144
BseNI ACTGG 2 cut(s) 234, 269
BseXI GCAGC 5 cut(s) 86, 136, 178, 466, 524
Bsh1236I CGCG 2 cut(s) 162, 421
BshFI GGCC 2 cut(s) 123, 468
BshNI GGYRCC 1 cut(s) 287
BshTI ACCGGT 1 cut(s) 357
BsiSI CCGG 3 cut(s) 341, 358, 413
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 3 cut(s) 268, 347, 475
BsmAI GTCTC 2 cut(s) 11, 304
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 2 cut(s) 123, 468
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 129, 238
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 1 cut(s) 421
BspANI GGCC 2 cut(s) 123, 468
BspFNI CGCG 2 cut(s) 162, 421
BspLI GGNNCC 1 cut(s) 289
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 144
BsrFI RCCGGY 2 cut(s) 340, 357
BsrI ACTGG 2 cut(s) 234, 269
BssAI RCCGGY 2 cut(s) 340, 357
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 2 cut(s) 129, 238
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 95, 403
Bst6I CTCTTC 2 cut(s) 28, 304
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 2 cut(s) 162, 421
BstKTI GATC 2 cut(s) 132, 241
BstMAI GTCTC 2 cut(s) 11, 304
BstMBI GATC 2 cut(s) 129, 238
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 510
BstUI CGCG 2 cut(s) 162, 421
BstV1I GCAGC 5 cut(s) 86, 136, 178, 466, 524
BsuRI GGCC 2 cut(s) 123, 468
BtsCI GGATG 1 cut(s) 273
BtsIMutI CAGTG 3 cut(s) 241, 262, 291
Cac8I GCNNGC 1 cut(s) 470
CaiI CAGNNNCTG 2 cut(s) 99, 218
Cfr10I RCCGGY 2 cut(s) 340, 357
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 288, 361
CspAI ACCGGT 1 cut(s) 357
CspCI CAANNNNNGTGG 2 cut(s) 324, 359
CviAII CATG 3 cut(s) 58, 133, 243
CviQI GTAC 2 cut(s) 288, 361
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 131, 240
DpnII GATC 2 cut(s) 129, 238
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 28, 304
EarI CTCTTC 2 cut(s) 28, 304
Eco130I CCWWGG 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 3 cut(s) 61, 136, 246
FaiI YATR 7 cut(s) 59, 134, 185, 198, 209, 244, 327
FaqI GGGAC 1 cut(s) 437
FatI CATG 3 cut(s) 57, 132, 242
FauI CCCGC 1 cut(s) 414
FblI GTMKAC 2 cut(s) 165, 486
Fnu4HI GCNGC 5 cut(s) 100, 150, 192, 480, 513
FokI GGATG 1 cut(s) 280
Fsp4HI GCNGC 5 cut(s) 100, 150, 192, 480, 513
FspBI CTAG 1 cut(s) 387
GluI GCNGC 5 cut(s) 100, 150, 192, 480, 513
HaeIII GGCC 2 cut(s) 123, 468
HapII CCGG 3 cut(s) 341, 358, 413
HgaI GACGC 1 cut(s) 151
Hin1II CATG 3 cut(s) 61, 136, 246
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 352
HpaII CCGG 3 cut(s) 341, 358, 413
HphI GGTGA 5 cut(s) 55, 188, 283, 347, 415
Hpy166II GTNNAC 5 cut(s) 55, 63, 91, 166, 487
Hpy8I GTNNAC 5 cut(s) 55, 63, 91, 166, 487
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 147, 387
HpyCH4III ACNGT 2 cut(s) 95, 403
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 102, 497, 512
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 3 cut(s) 61, 136, 246
KpnI GGTACC 1 cut(s) 291
Kzo9I GATC 2 cut(s) 129, 238
Lsp1109I GCAGC 5 cut(s) 86, 136, 178, 466, 524
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 131, 240
MboI GATC 2 cut(s) 129, 238
MboII GAAGA 3 cut(s) 45, 191, 321
MlsI TGGCCA 1 cut(s) 123
MluNI TGGCCA 1 cut(s) 123
MnlI CCTC 4 cut(s) 40, 168, 180, 383
Mox20I TGGCCA 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 445
MscI TGGCCA 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 123
MspI CCGG 3 cut(s) 341, 358, 413
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 2 cut(s) 162, 421
NdeII GATC 2 cut(s) 129, 238
NlaIII CATG 3 cut(s) 61, 136, 246
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 61
PciI ACATGT 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 352
PflMI CCANNNNNTGG 1 cut(s) 268
PinAI ACCGGT 1 cut(s) 357
PkrI GCNGC 5 cut(s) 101, 151, 193, 481, 514
Ppu21I YACGTR 1 cut(s) 364
PscI ACATGT 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 289
PstI CTGCAG 1 cut(s) 514
PstNI CAGNNNCTG 2 cut(s) 99, 218
RsaI GTAC 2 cut(s) 289, 362
RsaNI GTAC 2 cut(s) 288, 361
SalI GTCGAC 1 cut(s) 164
SatI GCNGC 5 cut(s) 100, 150, 192, 480, 513
Sau3AI GATC 2 cut(s) 129, 238
ScrFI CCNGG 1 cut(s) 285
SetI ASST 3 cut(s) 51, 101, 366
SfcI CTRYAG 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
SsiI CCGC 1 cut(s) 421
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 95, 403
TaiI ACGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 165
TfiI GAWTC 1 cut(s) 352
TscAI CASTG 3 cut(s) 241, 269, 298
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 5 cut(s) 99, 149, 191, 479, 512
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 95, 342
TspRI CASTG 3 cut(s) 241, 269, 298
Van91I CCANNNNNTGG 1 cut(s) 268
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 165, 486
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.