Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Reverse (-)

25633455 .. 25635789

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGGAAAACTAACTTGGCACCTGGTTTTCGGTTTCATCCGACTGATGTTGAACTTGTGAGATACTACTTGAAGAGGAAAGTTATGGGAAAAAAGTTCCAAGTTGATGCCATTGCTGAGGTCGACATTTACAAGTTCGAACCTCCTGATTTACCCGACAAATCATGTCTAGGGACTGGAGATCTTAAGTGGTACTTCTTCTGTCCAAGAGAAAAGAAGTATCCCAAAGGCGGTAAGGCAAACCGCTCTACTGAATGTGGTTACTGGAAGACCACAGGGAGAGACAGAGATGTTTCTTATAATGACGAAGTCACTGGGAAGATAAGAACTCTGATTTATCACTACGGGAAAATACCTCGCGGTGATCGGACTGATTGGGTCATACATGAATATAGACTTGAAGACAAAGTACTGGCTCAAAAGAATGTTCCTCAGGATACTTATGTGCTTTGCGTTCTCTTTAAGAAAAATGGACTTGGACCAAGACATGGATCTCAATATGGTGCTCCATTTAAGGAAGAGGATTGGAGTGATAAGGAAGAAGAATATACTCAGAATCATCTTGTAGCTGGTCCTAGTAAAGAAACCAGTCTAGCTGCTAAGGCCTCACACTCGTACGCTCCTAAGGATGGTTTGACAGGAGTGATCTCAGAATCTTGCGTCTCTGATGTGCCGCCACTAACTGCCACAGTGCTTCCACCTCTAACAAGTGATGTTATAGCTTACAATCCCTTTTCTTCTTCACCTCTTCTTGAGGTTCCTCAAGTATCTCTCGATGGTGGCGAGTTAAATTCGATGCTTGATCTCTTTTCTGTTGACAATGACGACTGTTTACTTTTCGACGATTTCGACTACCATAATGAGGTAAGACATCCTGATGGTTTTGTAAACAAGGAAGCTCCGGTGTTCTTAGGAGATGGCAATTTCAGTGGAATGTTTGACCTGAGCAATGACCAAGTCGTAGAGCTACAGGATCTGATACAGTCACCCACTCCTCATCCTCCTTCTCCTCCAGCTCAAGCTAGTATTCCTGATGACTCAAGAAGCAACGGTCAGACTAAGGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

356

Amino Acids

39.87

Weight (kDa)

5.08

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 133	1e-41	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	360
AciI	CCGC	4 cut(s)	231, 244, 360, 674
AclWI	GGATC	2 cut(s)	499, 981
AcsI	RAATTY	1 cut(s)	790
AfaI	GTAC	3 cut(s)	194, 411, 617
AfiI	CCNNNNNNNGG	4 cut(s)	230, 488, 629, 862
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	53, 73, 401
AjnI	CCWGG	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	7 cut(s)	569, 596, 722, 899, 967, 1016, 1022
AluI	AGCT	7 cut(s)	569, 596, 722, 899, 967, 1016, 1022
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	2 cut(s)	276, 667
AlwI	GGATC	2 cut(s)	499, 981
AlwNI	CAGNNNCTG	1 cut(s)	976
AoxI	GGCC	1 cut(s)	603
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	1 cut(s)	790
AspS9I	GGNCC	2 cut(s)	479, 572
AsuHPI	GGTGA	3 cut(s)	374, 735, 978
AsuII	TTCGAA	1 cut(s)	138
AvaII	GGWCC	2 cut(s)	479, 572
AxyI	CCTNAGG	2 cut(s)	432, 624
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BanI	GGYRCC	1 cut(s)	19
BarI	GAAGNNNNNNTAC	2 cut(s)	393, 425
BbsI	GAAGAC	2 cut(s)	275, 408
Bbv12I	GWGCWC	1 cut(s)	508
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	4 cut(s)	623, 770, 872, 911
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	2 cut(s)	231, 430
BcoDI	GTCTC	2 cut(s)	276, 667
BfaI	CTAG	4 cut(s)	170, 576, 593, 1023
BfmI	CTRYAG	1 cut(s)	968
BfrI	CTTAAG	1 cut(s)	185
BfuI	GTATCC	2 cut(s)	231, 430
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	2 cut(s)	597, 674
BlsI	GCNGC	2 cut(s)	598, 675
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	2 cut(s)	479, 572
BmgT120I	GGNCC	2 cut(s)	479, 572
BmiI	GGNNCC	2 cut(s)	21, 759
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	97, 786
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	2 cut(s)	275, 408
BpmI	CTGGAG	2 cut(s)	198, 996
Bpu10I	CCTNAGC	3 cut(s)	117, 600, 944
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	4 cut(s)	747, 773, 1002, 1024
BsaWI	WCCGGW	1 cut(s)	901
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 488, 629, 862
Bse1I	ACTGG	5 cut(s)	181, 269, 319, 417, 588
Bse21I	CCTNAGG	2 cut(s)	432, 624
Bse3DI	GCAATG	2 cut(s)	111, 955
BseBI	CCWGG	1 cut(s)	24
BseGI	GGATG	4 cut(s)	37, 634, 871, 997
BseLI	CCNNNNNNNGG	4 cut(s)	230, 488, 629, 862
BseMI	GCAATG	2 cut(s)	111, 955
BseMII	CTCAG	5 cut(s)	108, 446, 566, 663, 935
BseNI	ACTGG	5 cut(s)	181, 269, 319, 417, 588
BseRI	GAGGAG	2 cut(s)	984, 999
BseXI	GCAGC	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	605
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	902
BsiWI	CGTACG	1 cut(s)	615
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	230, 488, 629, 862
BsmAI	GTCTC	2 cut(s)	276, 667
BsmBI	CGTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	605
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	6 cut(s)	181, 364, 491, 645, 802, 973
BspACI	CCGC	4 cut(s)	231, 244, 360, 674
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	5 cut(s)	109, 445, 565, 662, 936
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	21, 759
BspPI	GGATC	2 cut(s)	499, 981
BspT104I	TTCGAA	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	2 cut(s)	111, 955
BsrI	ACTGG	5 cut(s)	181, 269, 319, 417, 588
BssMI	GATC	6 cut(s)	181, 364, 491, 645, 802, 973
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	4 cut(s)	691, 830, 984, 1052
Bst6I	CTCTTC	3 cut(s)	68, 513, 753
BstAFI	CTTAAG	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	138
BstDEI	CTNAG	9 cut(s)	117, 432, 552, 600, 624, 649, 910, 944, 1059
BstF5I	GGATG	4 cut(s)	37, 634, 871, 997
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	6 cut(s)	184, 367, 494, 648, 805, 976
BstMAI	GTCTC	2 cut(s)	276, 667
BstMBI	GATC	6 cut(s)	181, 364, 491, 645, 802, 973
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	968
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	2 cut(s)	275, 408
BstX2I	RGATCY	3 cut(s)	181, 491, 973
BstYI	RGATCY	3 cut(s)	181, 491, 973
Bsu36I	CCTNAGG	2 cut(s)	432, 624
BsuI	GTATCC	2 cut(s)	231, 430
BsuRI	GGCC	1 cut(s)	605
BtsCI	GGATG	4 cut(s)	37, 634, 871, 997
BtsIMutI	CAGTG	3 cut(s)	312, 696, 934
CaiI	CAGNNNCTG	1 cut(s)	976
Cfr13I	GGNCC	2 cut(s)	479, 572
CseI	GACGC	1 cut(s)	649
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	193, 410, 616
CspCI	CAANNNNNGTGG	2 cut(s)	910, 945
CviAII	CATG	3 cut(s)	165, 386, 488
CviJI	RGCY	9 cut(s)	416, 569, 596, 605, 722, 899, 967, 1016, 1022
CviKI_1	RGCY	9 cut(s)	416, 569, 596, 605, 722, 899, 967, 1016, 1022
CviQI	GTAC	3 cut(s)	193, 410, 616
DdeI	CTNAG	9 cut(s)	117, 432, 552, 600, 624, 649, 910, 944, 1059
DpnI	GATC	6 cut(s)	183, 366, 493, 647, 804, 975
DpnII	GATC	6 cut(s)	181, 364, 491, 645, 802, 973
Eam1104I	CTCTTC	3 cut(s)	68, 513, 753
EarI	CTCTTC	3 cut(s)	68, 513, 753
Eco147I	AGGCCT	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	479, 572
Eco81I	CCTNAGG	2 cut(s)	432, 624
EcoRII	CCWGG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	667
FaeI	CATG	3 cut(s)	168, 389, 491
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	164, 385, 487
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	597, 674
FokI	GGATG	4 cut(s)	24, 641, 858, 984
Fsp4HI	GCNGC	2 cut(s)	597, 674
FspBI	CTAG	4 cut(s)	170, 576, 593, 1023
GluI	GCNGC	2 cut(s)	597, 674
GsuI	CTGGAG	2 cut(s)	198, 996
HaeIII	GGCC	1 cut(s)	605
HapII	CCGG	1 cut(s)	902
HgaI	GACGC	1 cut(s)	649
Hin1II	CATG	3 cut(s)	168, 389, 491
HincII	GTYRAC	2 cut(s)	124, 817
HindII	GTYRAC	2 cut(s)	124, 817
HinfI	GANTC	3 cut(s)	556, 653, 1037
HpaII	CCGG	1 cut(s)	902
HphI	GGTGA	3 cut(s)	374, 735, 978
Hpy166II	GTNNAC	4 cut(s)	124, 817, 833, 889
Hpy188I	TCNGA	8 cut(s)	42, 333, 369, 555, 652, 667, 978, 1056
Hpy188III	TCNNGA	7 cut(s)	146, 434, 752, 773, 875, 1031, 1041
Hpy8I	GTNNAC	4 cut(s)	124, 817, 833, 889
Hpy99I	CGWCG	1 cut(s)	845
HpyAV	CCTTC	1 cut(s)	1014
HpyCH4III	ACNGT	4 cut(s)	691, 830, 984, 1052
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	9 cut(s)	117, 432, 552, 600, 624, 649, 910, 944, 1059
Hsp92II	CATG	3 cut(s)	168, 389, 491
Kzo9I	GATC	6 cut(s)	181, 364, 491, 645, 802, 973
LmnI	GCTCC	3 cut(s)	511, 625, 904
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	2 cut(s)	97, 786
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	4 cut(s)	170, 576, 593, 1023
MaeIII	GTNAC	3 cut(s)	260, 310, 984
MalI	GATC	6 cut(s)	183, 366, 493, 647, 804, 975
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	6 cut(s)	181, 364, 491, 645, 802, 973
MflI	RGATCY	3 cut(s)	181, 491, 973
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	2 cut(s)	790, 922
MlyI	GAGTC	1 cut(s)	1031
MmeI	TCCRAC	1 cut(s)	65
MseI	TTAA	5 cut(s)	186, 462, 513, 788, 1069
MslI	CAYNNNNRTG	1 cut(s)	876
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	1 cut(s)	902
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	602
NdeII	GATC	6 cut(s)	181, 364, 491, 645, 802, 973
NlaIII	CATG	3 cut(s)	168, 389, 491
NlaIV	GGNNCC	2 cut(s)	21, 759
NmuCI	GTSAC	2 cut(s)	310, 984
NspV	TTCGAA	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	2 cut(s)	780, 846
PfeI	GAWTC	2 cut(s)	556, 653
Pfl23II	CGTACG	1 cut(s)	615
PflFI	GACNNNGTC	2 cut(s)	308, 956
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	598, 675
PleI	GAGTC	1 cut(s)	1031
PpsI	GAGTC	1 cut(s)	1031
PsiI	TTATAA	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspLI	CGTACG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	21, 759
PspPI	GGNCC	2 cut(s)	479, 572
PstNI	CAGNNNCTG	1 cut(s)	976
PsuI	RGATCY	3 cut(s)	181, 491, 973
PsyI	GACNNNGTC	2 cut(s)	308, 956
RsaI	GTAC	3 cut(s)	194, 411, 617
RsaNI	GTAC	3 cut(s)	193, 410, 616
RseI	CAYNNNNRTG	1 cut(s)	876
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	5 cut(s)	186, 462, 513, 788, 1069
SatI	GCNGC	2 cut(s)	597, 674
Sau3AI	GATC	6 cut(s)	181, 364, 491, 645, 802, 973
Sau96I	GGNCC	2 cut(s)	479, 572
ScaI	AGTACT	1 cut(s)	411
SchI	GAGTC	1 cut(s)	1031
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	508
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	97, 786
SfcI	CTRYAG	1 cut(s)	968
SfuI	TTCGAA	1 cut(s)	138
SinI	GGWCC	2 cut(s)	479, 572
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	5 cut(s)	185, 752, 762, 1017, 1039
SmoI	CTYRAG	5 cut(s)	185, 752, 762, 1017, 1039
Sse9I	AATT	2 cut(s)	790, 922
SseBI	AGGCCT	1 cut(s)	605
SsiI	CCGC	4 cut(s)	231, 244, 360, 674
SspMI	CTAG	4 cut(s)	170, 576, 593, 1023
StuI	AGGCCT	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	4 cut(s)	691, 830, 984, 1052
TaqI	TCGA	6 cut(s)	123, 138, 774, 794, 840, 849
TasI	AATT	2 cut(s)	790, 922
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	2 cut(s)	556, 653
Tru1I	TTAA	5 cut(s)	186, 462, 513, 788, 1069
Tru9I	TTAA	5 cut(s)	186, 462, 513, 788, 1069
TscAI	CASTG	3 cut(s)	319, 696, 934
TseFI	GTSAC	2 cut(s)	310, 984
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	2 cut(s)	310, 984
TspDTI	ATGAA	2 cut(s)	26, 402
TspRI	CASTG	3 cut(s)	319, 696, 934
Tth111I	GACNNNGTC	2 cut(s)	308, 956
Van91I	CCANNNNNTGG	1 cut(s)	488
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	479, 572
XapI	RAATTY	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	4 cut(s)	170, 576, 593, 1023
ZrmI	AGTACT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.