Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

11124949 .. 11126292

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0083700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCATATCAGGCATGGAAATTATGGAGCGAATGCAAGGGACTTGACTTAATGGATGAAGTTTTAGCCGACTCATTTTCTCCATCGGAAGTTCTGAGATGCATTCATGTTGGGATTCTCTGTGTACAGGACCTTGCCATGGATAGGCCAATAACACCGGATTTAGTTTCCATGCTAGTTAGTGAAACAGATCGTCCACAACCCAAACAACCTCAATTTGATTTTCAAAGCTCGTTAGAATGTGATCTACAGACACAAAGTGACAATCAGCCATCATCTTCCTGCCATGACGAGAAGAGCTTCGCCTTGCTCCAGTTTAAGCAAAGCTTTGTCATCGACGAATTTGCTTCTGTTGGTGAGGGTGCTTATCCAAAGGTTTTGTCATGGAAACCAGCTGCTGCTAAAGGATGCTGCTCATGGGACGCGGTCGAGTGTGATCATGGATGCTGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

151

Amino Acids

16.79

Weight (kDa)

4.41

Isoelectric Point (pI)

64.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	425
AciI	CCGC	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	139, 144
AgsI	TTSAA	1 cut(s)	227
AluBI	AGCT	4 cut(s)	231, 300, 327, 395
AluI	AGCT	4 cut(s)	231, 300, 327, 395
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	395, 398, 411, 447
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	130
BbvI	GCAGC	4 cut(s)	382, 385, 398, 434
BccI	CCATC	2 cut(s)	91, 280
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BclI	TGATCA	1 cut(s)	436
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	248
BisI	GCNGC	4 cut(s)	396, 399, 412, 448
BlsI	GCNGC	4 cut(s)	397, 400, 413, 449
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmsI	GCATC	3 cut(s)	89, 398, 434
BpmI	CTGGAG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 144
Bse1I	ACTGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	61, 413, 449
BseLI	CCNNNNNNNGG	2 cut(s)	139, 144
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	313
BseXI	GCAGC	4 cut(s)	382, 385, 398, 434
Bsh1236I	CGCG	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	148
BsiEI	CGRYCG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	54, 434
BslI	CCNNNNNNNGG	2 cut(s)	139, 144
BsmFI	GGGAC	2 cut(s)	54, 434
BsmI	GAATGC	2 cut(s)	38, 102
BsnI	GGCC	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	190, 244, 436
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	452
BspQI	GCTCTTC	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	190, 244, 436
BssT1I	CCWWGG	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	61, 413, 449
BstFNI	CGCG	1 cut(s)	425
BstKTI	GATC	3 cut(s)	193, 247, 439
BstMBI	GATC	3 cut(s)	190, 244, 436
BstMCI	CGRYCG	1 cut(s)	429
BstSFI	CTRYAG	1 cut(s)	248
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	4 cut(s)	382, 385, 398, 434
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	61, 413, 449
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	9 cut(s)	15, 107, 139, 172, 287, 384, 417, 440, 453
CviJI	RGCY	7 cut(s)	68, 148, 231, 271, 300, 327, 395
CviKI_1	RGCY	7 cut(s)	68, 148, 231, 271, 300, 327, 395
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	3 cut(s)	192, 246, 438
DpnII	GATC	3 cut(s)	190, 244, 436
DraIII	CACNNNGTG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	9 cut(s)	18, 110, 142, 175, 290, 387, 420, 443, 456
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	2 cut(s)	54, 434
FatI	CATG	9 cut(s)	14, 106, 138, 171, 286, 383, 416, 439, 452
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	4 cut(s)	396, 399, 412, 448
FokI	GGATG	2 cut(s)	68, 420
Fsp4HI	GCNGC	4 cut(s)	396, 399, 412, 448
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	4 cut(s)	396, 399, 412, 448
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	431
Hin1II	CATG	9 cut(s)	18, 110, 142, 175, 290, 387, 420, 443, 456
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	2 cut(s)	71, 115
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	125, 197
Hpy188I	TCNGA	2 cut(s)	88, 96
Hpy188III	TCNNGA	1 cut(s)	453
Hpy8I	GTNNAC	2 cut(s)	125, 197
Hpy99I	CGWCG	1 cut(s)	341
HpyCH4V	TGCA	2 cut(s)	36, 102
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	9 cut(s)	18, 110, 142, 175, 290, 387, 420, 443, 456
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	190, 244, 436
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	27, 315
LpnPI	CCDG	5 cut(s)	113, 171, 295, 326, 405
Lsp1109I	GCAGC	4 cut(s)	382, 385, 398, 434
LweI	GCATC	3 cut(s)	89, 398, 434
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	192, 246, 438
MboI	GATC	3 cut(s)	190, 244, 436
MboII	GAAGA	2 cut(s)	270, 307
MluCI	AATT	3 cut(s)	20, 215, 341
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	222, 352
Mph1103I	ATGCAT	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	2 cut(s)	50, 318
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	158
Mva1269I	GAATGC	2 cut(s)	38, 102
MvnI	CGCG	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	190, 244, 436
NlaIII	CATG	9 cut(s)	18, 110, 142, 175, 290, 387, 420, 443, 456
NmuCI	GTSAC	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	104
PagI	TCATGA	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	290
PctI	GAATGC	2 cut(s)	38, 102
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	115
PflFI	GACNNNGTC	1 cut(s)	425
PkrI	GCNGC	4 cut(s)	397, 400, 413, 449
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	130
PspPPI	RGGWCCY	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	398
PsyI	GACNNNGTC	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	50, 318
SatI	GCNGC	4 cut(s)	396, 399, 412, 448
Sau3AI	GATC	3 cut(s)	190, 244, 436
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	65
SetI	ASST	7 cut(s)	135, 214, 233, 302, 329, 378, 397
SfaNI	GCATC	3 cut(s)	89, 398, 434
SfcI	CTRYAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	130
Sse9I	AATT	3 cut(s)	20, 215, 341
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	2 cut(s)	336, 429
TasI	AATT	3 cut(s)	20, 215, 341
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	50, 318
Tru9I	TTAA	2 cut(s)	50, 318
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	4 cut(s)	395, 398, 411, 447
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	72, 95
Tth111I	GACNNNGTC	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.