Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

3261961 .. 3265416

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G035500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGGGAAATCATCCTTGGCTCCTGGGTTTCGGTTCAAGCCAACTGATGTTGAGCTTGTGCAATACTACTTGAAGAGAAAGTTACTGGGGAAAAGGCTTGGTTTTAAAGTCATTGCAGAGGTTGACATTTACAAGTATGATCCTTGGGATCTTCCAGACAAATCTTGCTGGGATTGTGGAGATCTGAAATGGTATTTCTTTTGTCCGAGAGAAAAGAAATATCGTAGTGGGAATAGAATTCAACGTGCCACTGAAGGTGGTTACTGGAAGACCACGGGAAAGGATAGATCCGTTCTTTACAGTGGTGAAATTGTTGGGTGGATAAAAACTTTAATTTTTCATACGGGTCGAGCCCCATCAGGAGATCGAACAAATTGGGTTATGCATGAGTATAGGCTTGAAGATCAGGGCCTGGCTGATAGGGGTGTGCCTCTGGACTCATATGTGCTCTGCATGATTTTCCAAAAAGAAGGGCTAGGGCCAAGAATTGGTGCACAATATGGTGCACCCTTTAAAGAGGAAGACTGGAGTGATGATGAGGTTGAAATTACTTCAGAAGCAGTCCAAGTTGCAATCACGCCTGAGCCAGATCTTGGGCTGCCTTGCAATAATGTCAGCCCAACTGCTACTAATGCACATTATGTTGGGGATATTGGCATAGGTCCATCTGGATCAGGTATTTATGATATTTTACCACCTTTTTGCGAGGTTTCCCAGCCGGTTTCCAGTAATTACGTTACACTGGAGATGCCTCTTGCTTCTGTTGGTGATGATATAATTTCAATGTTTGATTGCTTTACCGAAGAAAGTACTCTCTATATAGATGAGCCTAAAAAAGTTGAGTCGGAAGGTCGTTTAGAAACAGCCCAAAATGCAAACATGCCTAGTACACATTCCCCTGAAGTTATATGCGCAGGTCCTTCATTCGAATCATGCGGATTTGATGTCTTACGACCTTGCAATGTTAACGAATCGGTTTCCTGTAATTTTGTTACAATGGAGAACCCTCCTGCTTCTAATGGTGATGAGACCCTGCCAATTATGGATTGCTTTGCAGAAGAAAGCGCGTTTCTTGTGAACGATAATGGCAAAAATGAGGAACTTAATAATCCTGAACATTTTGGCAATGCTACACCTCATTTCAATACAAGCAACATATATGAAGATCTAGGAGACTTGGAAAACTTGGGTAGAGTTGGTGAAGTTGGATATAATTTCTGCAGTGAGCCTGATTCTAGGAGCCATTTTCTGGAGCTATATGATCTCGACCAACCTCAGCATCCTAATCTCTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

433

Amino Acids

48.34

Weight (kDa)

4.54

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	913
Acc36I	ACCTGC	1 cut(s)	905
AccB7I	CCANNNNNTGG	3 cut(s)	488, 593, 1249
AccII	CGCG	1 cut(s)	1067
AciI	CCGC	1 cut(s)	936
AclWI	GGATC	4 cut(s)	134, 156, 282, 679
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	3 cut(s)	273, 537, 921
AfaI	GTAC	2 cut(s)	811, 889
AfiI	CCNNNNNNNGG	3 cut(s)	488, 593, 1249
AgsI	TTSAA	7 cut(s)	37, 73, 242, 401, 545, 783, 1144
AjnI	CCWGG	2 cut(s)	22, 411
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	55, 1255
AluI	AGCT	2 cut(s)	55, 1255
Alw21I	GWGCWC	3 cut(s)	450, 496, 508
Alw26I	GTCTC	2 cut(s)	1022, 1167
Alw44I	GTGCAC	2 cut(s)	492, 504
AlwI	GGATC	4 cut(s)	134, 156, 282, 679
AlwNI	CAGNNNCTG	1 cut(s)	412
AoxI	GGCC	2 cut(s)	409, 479
ApaLI	GTGCAC	2 cut(s)	492, 504
ApeKI	GCWGC	1 cut(s)	598
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	914, 1067
AspS9I	GGNCC	4 cut(s)	409, 479, 662, 917
AsuHPI	GGTGA	4 cut(s)	317, 779, 1034, 1211
AsuII	TTCGAA	1 cut(s)	927
AvaII	GGWCC	2 cut(s)	662, 917
BaeGI	GKGCMC	2 cut(s)	496, 508
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	2 cut(s)	275, 528
Bbv12I	GWGCWC	3 cut(s)	450, 496, 508
BbvCI	CCTCAGC	1 cut(s)	1275
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	2 cut(s)	364, 673
BciT130I	CCWGG	2 cut(s)	24, 413
BcoDI	GTCTC	2 cut(s)	1022, 1167
BfaI	CTAG	4 cut(s)	476, 885, 1169, 1236
BfmI	CTRYAG	1 cut(s)	1219
BfuAI	ACCTGC	1 cut(s)	905
BglII	AGATCT	3 cut(s)	181, 589, 1165
BisI	GCNGC	1 cut(s)	599
BlsI	GCNGC	1 cut(s)	600
BmcAI	AGTACT	1 cut(s)	811
Bme1390I	CCNGG	2 cut(s)	24, 413
Bme18I	GGWCC	2 cut(s)	662, 917
BmgT120I	GGNCC	4 cut(s)	409, 479, 662, 917
BmiI	GGNNCC	2 cut(s)	21, 1241
BmrFI	CCNGG	2 cut(s)	24, 413
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	738, 1288
BmuI	ACTGGG	1 cut(s)	95
BpiI	GAAGAC	2 cut(s)	275, 528
BpmI	CTGGAG	3 cut(s)	547, 764, 1271
Bpu10I	CCTNAGC	2 cut(s)	582, 1275
Bpu14I	TTCGAA	1 cut(s)	927
BsaI	GGTCTC	1 cut(s)	1022
BsaJI	CCNNGG	4 cut(s)	15, 23, 143, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	488, 593, 1249
Bse118I	RCCGGY	1 cut(s)	718
Bse1I	ACTGG	5 cut(s)	90, 269, 530, 726, 747
Bse3DI	GCAATG	3 cut(s)	111, 967, 1132
BseBI	CCWGG	2 cut(s)	24, 413
BseDI	CCNNGG	4 cut(s)	15, 23, 143, 273
BseGI	GGATG	2 cut(s)	11, 1279
BseLI	CCNNNNNNNGG	3 cut(s)	488, 593, 1249
BseMI	GCAATG	3 cut(s)	111, 967, 1132
BseMII	CTCAG	2 cut(s)	573, 1289
BseNI	ACTGG	5 cut(s)	90, 269, 530, 726, 747
BseSI	GKGCMC	2 cut(s)	496, 508
BseXI	GCAGC	1 cut(s)	585
BseYI	CCCAGC	2 cut(s)	168, 714
Bsh1236I	CGCG	1 cut(s)	1067
BshFI	GGCC	2 cut(s)	411, 481
BsiHKAI	GWGCWC	3 cut(s)	450, 496, 508
BsiSI	CCGG	1 cut(s)	719
BslI	CCNNNNNNNGG	3 cut(s)	488, 593, 1249
BsmAI	GTCTC	2 cut(s)	1022, 1167
BsnI	GGCC	2 cut(s)	411, 481
Bso31I	GGTCTC	1 cut(s)	1022
Bsp119I	TTCGAA	1 cut(s)	927
Bsp1286I	GDGCHC	4 cut(s)	355, 450, 496, 508
BspACI	CCGC	1 cut(s)	936
BspANI	GGCC	2 cut(s)	411, 481
BspCNI	CTCAG	2 cut(s)	574, 1288
BspFNI	CGCG	1 cut(s)	1067
BspLI	GGNNCC	2 cut(s)	21, 1241
BspMAI	CTGCAG	1 cut(s)	1223
BspMI	ACCTGC	1 cut(s)	905
BspPI	GGATC	4 cut(s)	134, 156, 282, 679
BspT104I	TTCGAA	1 cut(s)	927
BspTNI	GGTCTC	1 cut(s)	1022
BsrDI	GCAATG	3 cut(s)	111, 967, 1132
BsrFI	RCCGGY	1 cut(s)	718
BsrI	ACTGG	5 cut(s)	90, 269, 530, 726, 747
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	4 cut(s)	15, 23, 143, 273
BssT1I	CCWWGG	2 cut(s)	15, 143
Bst2UI	CCWGG	2 cut(s)	24, 413
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	2 cut(s)	68, 1295
BstBI	TTCGAA	1 cut(s)	927
BstDEI	CTNAG	2 cut(s)	582, 1275
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	11, 1279
BstFNI	CGCG	1 cut(s)	1067
BstHHI	GCGC	2 cut(s)	914, 1067
BstMAI	GTCTC	2 cut(s)	1022, 1167
BstMWI	GCNNNNNNNGC	2 cut(s)	632, 872
BstNI	CCWGG	2 cut(s)	24, 413
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	2 cut(s)	22, 411
BstSFI	CTRYAG	1 cut(s)	1219
BstSLI	GKGCMC	2 cut(s)	496, 508
BstUI	CGCG	1 cut(s)	1067
BstV1I	GCAGC	1 cut(s)	585
BstV2I	GAAGAC	2 cut(s)	275, 528
BstX2I	RGATCY	5 cut(s)	148, 181, 287, 589, 1165
BstYI	RGATCY	5 cut(s)	148, 181, 287, 589, 1165
BsuRI	GGCC	2 cut(s)	411, 481
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	11, 1279
BtsI	GCAGTG	1 cut(s)	1228
BtsIMutI	CAGTG	4 cut(s)	249, 307, 740, 1228
BveI	ACCTGC	1 cut(s)	905
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	2 cut(s)	914, 1067
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	4 cut(s)	409, 479, 662, 917
Csp6I	GTAC	2 cut(s)	810, 888
CviAII	CATG	4 cut(s)	386, 454, 880, 933
CviQI	GTAC	2 cut(s)	810, 888
DdeI	CTNAG	2 cut(s)	582, 1275
DraI	TTTAAA	2 cut(s)	106, 514
Eam1104I	CTCTTC	2 cut(s)	68, 1295
EarI	CTCTTC	2 cut(s)	68, 1295
Eco130I	CCWWGG	2 cut(s)	15, 143
Eco24I	GRGCYC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	1022
Eco47I	GGWCC	2 cut(s)	662, 917
Eco57I	CTGAAG	3 cut(s)	273, 537, 921
EcoO109I	RGGNCCY	2 cut(s)	409, 917
EcoRI	GAATTC	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	22, 411
EcoT14I	CCWWGG	2 cut(s)	15, 143
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	15, 143
FaeI	CATG	4 cut(s)	389, 457, 883, 936
FatI	CATG	4 cut(s)	385, 453, 879, 932
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	599
FokI	GGATG	1 cut(s)	1266
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	1 cut(s)	599
FspBI	CTAG	4 cut(s)	476, 885, 1169, 1236
FspI	TGCGCA	1 cut(s)	913
GlaI	GCGC	2 cut(s)	913, 1066
GluI	GCNGC	1 cut(s)	599
GsaI	CCCAGC	2 cut(s)	172, 718
GsuI	CTGGAG	3 cut(s)	547, 764, 1271
HaeIII	GGCC	2 cut(s)	411, 481
HapII	CCGG	1 cut(s)	719
HhaI	GCGC	2 cut(s)	914, 1067
Hin1II	CATG	4 cut(s)	389, 457, 883, 936
Hin6I	GCGC	2 cut(s)	912, 1065
HinP1I	GCGC	2 cut(s)	912, 1065
HincII	GTYRAC	2 cut(s)	124, 967
HindII	GTYRAC	2 cut(s)	124, 967
HinfI	GANTC	5 cut(s)	437, 842, 929, 971, 1232
HpaI	GTTAAC	1 cut(s)	967
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	4 cut(s)	317, 779, 1034, 1211
Hpy166II	GTNNAC	6 cut(s)	124, 494, 506, 890, 967, 1078
Hpy188I	TCNGA	4 cut(s)	186, 207, 556, 847
Hpy188III	TCNNGA	7 cut(s)	155, 360, 434, 669, 1112, 1250, 1265
Hpy8I	GTNNAC	6 cut(s)	124, 494, 506, 890, 967, 1078
HpyAV	CCTTC	4 cut(s)	248, 464, 842, 930
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	244, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	632, 872
HpyF3I	CTNAG	2 cut(s)	582, 1275
HpySE526I	ACGT	2 cut(s)	244, 735
Hsp92II	CATG	4 cut(s)	389, 457, 883, 936
HspAI	GCGC	2 cut(s)	912, 1065
KspAI	GTTAAC	1 cut(s)	967
LmnI	GCTCC	3 cut(s)	25, 1239, 1252
Lsp1109I	GCAGC	1 cut(s)	585
LweI	GCATC	2 cut(s)	738, 1288
MaeI	CTAG	4 cut(s)	476, 885, 1169, 1236
MaeII	ACGT	2 cut(s)	244, 735
MaeIII	GTNAC	4 cut(s)	81, 260, 736, 991
MboII	GAAGA	9 cut(s)	85, 143, 280, 413, 533, 815, 1070, 1175, 1282
MflI	RGATCY	5 cut(s)	148, 181, 287, 589, 1165
MhlI	GDGCHC	4 cut(s)	355, 450, 496, 508
MlyI	GAGTC	2 cut(s)	431, 851
MmeI	TCCRAC	2 cut(s)	825, 1186
Mph1103I	ATGCAT	1 cut(s)	387
MseI	TTAA	5 cut(s)	105, 332, 513, 966, 1104
MspI	CCGG	1 cut(s)	719
MspR9I	CCNGG	2 cut(s)	24, 413
MvaI	CCWGG	2 cut(s)	24, 413
MvnI	CGCG	1 cut(s)	1067
MwoI	GCNNNNNNNGC	2 cut(s)	632, 872
NdeI	CATATG	1 cut(s)	442
NlaIII	CATG	4 cut(s)	389, 457, 883, 936
NlaIV	GGNNCC	2 cut(s)	21, 1241
NsbI	TGCGCA	1 cut(s)	913
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	883
NspV	TTCGAA	1 cut(s)	927
PfeI	GAWTC	3 cut(s)	929, 971, 1232
PflMI	CCANNNNNTGG	3 cut(s)	488, 593, 1249
PkrI	GCNGC	1 cut(s)	600
PleI	GAGTC	2 cut(s)	431, 850
PpsI	GAGTC	2 cut(s)	431, 850
PpuMI	RGGWCCY	1 cut(s)	917
Psp5II	RGGWCCY	1 cut(s)	917
Psp6I	CCWGG	2 cut(s)	22, 411
PspFI	CCCAGC	2 cut(s)	168, 714
PspGI	CCWGG	2 cut(s)	22, 411
PspN4I	GGNNCC	2 cut(s)	21, 1241
PspPI	GGNCC	4 cut(s)	409, 479, 662, 917
PspPPI	RGGWCCY	1 cut(s)	917
PstI	CTGCAG	1 cut(s)	1223
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	5 cut(s)	148, 181, 287, 589, 1165
RsaI	GTAC	2 cut(s)	811, 889
RsaNI	GTAC	2 cut(s)	810, 888
SaqAI	TTAA	5 cut(s)	105, 332, 513, 966, 1104
SatI	GCNGC	1 cut(s)	599
Sau96I	GGNCC	4 cut(s)	409, 479, 662, 917
ScaI	AGTACT	1 cut(s)	811
SchI	GAGTC	2 cut(s)	431, 851
ScrFI	CCNGG	2 cut(s)	24, 413
SduI	GDGCHC	4 cut(s)	355, 450, 496, 508
SfaNI	GCATC	2 cut(s)	738, 1288
SfcI	CTRYAG	1 cut(s)	1219
SfuI	TTCGAA	1 cut(s)	927
SinI	GGWCC	2 cut(s)	662, 917
SsiI	CCGC	1 cut(s)	936
SspMI	CTAG	4 cut(s)	476, 885, 1169, 1236
StyD4I	CCNGG	2 cut(s)	22, 411
StyI	CCWWGG	2 cut(s)	15, 143
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	2 cut(s)	247, 738
TaqI	TCGA	4 cut(s)	349, 367, 927, 1266
TatI	WGTACW	2 cut(s)	809, 887
TfiI	GAWTC	3 cut(s)	929, 971, 1232
Tru1I	TTAA	5 cut(s)	105, 332, 513, 966, 1104
Tru9I	TTAA	5 cut(s)	105, 332, 513, 966, 1104
TscAI	CASTG	4 cut(s)	256, 307, 747, 1228
TseI	GCWGC	1 cut(s)	598
TspDTI	ATGAA	3 cut(s)	329, 912, 1176
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	4 cut(s)	256, 307, 747, 1228
Van91I	CCANNNNNTGG	3 cut(s)	488, 593, 1249
VneI	GTGCAC	2 cut(s)	492, 504
VpaK11BI	GGWCC	2 cut(s)	662, 917
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	883
XspI	CTAG	4 cut(s)	476, 885, 1169, 1236
ZrmI	AGTACT	1 cut(s)	811
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.