Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Reverse (-)

11126549 .. 11127930

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0083800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCAAGATACCATTTCTTTAAATCTAGTTGTCAACAATTTGGCCTTAGTAATAGGAAGCCTTATTCTGAGTTGAAGACCGACGAATGTGATCGGTATGGAGGAGCTTATCTTGCAAATGTACTTCAACTTCTTAGACATATCCACACCATCTTCTTTAATGAAGTCGAGTTGCAGGGGTGGGATCTTATCGATAGAGATGTGAGGCTCGTCCTAAAAATCCTTCAGAAGGAAGTCTTGAAGGGATGTAAAATTGTTTTCAGCCATGTCTTCCCTTCAAATGTGAAGGCTGATACTCATCCTTTGTGGAAAATGGCAGAGCAATTGGGAGCTACTTGTTCGACACAAGTGGATTCATCAGTCACACATGTGGTTGCAGTAGATGCTCGAACACAGAAATCTTGTTGGGCAGTAAAAGAAGGAAAGTTTTTGGTGAATCCACAGTGGGTTCATACTGCAAATTTTATGTGGCAAAAGCAGCCTGAAGATAATTTCCCCTGTCAAACCAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

171

Amino Acids

19.76

Weight (kDa)

8.52

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	78 - 150	1.3e-09	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	98 - 149	3.8e-07	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	2 cut(s)	209, 504
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	76, 128, 241, 279
AleI	CACNNNNGTG	1 cut(s)	368
AluBI	AGCT	2 cut(s)	107, 332
AluI	AGCT	2 cut(s)	107, 332
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	445
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BbsI	GAAGAC	2 cut(s)	83, 262
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	2 cut(s)	83, 262
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	297
BseCI	ATCGAT	1 cut(s)	192
BseGI	GGATG	2 cut(s)	251, 298
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	490
BshFI	GGCC	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	229
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	91, 184
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	192
BspPI	GGATC	1 cut(s)	192
BssMI	GATC	2 cut(s)	91, 184
Bst4CI	ACNGT	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	47, 69, 134
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	251, 298
BstKTI	GATC	2 cut(s)	94, 187
BstMBI	GATC	2 cut(s)	91, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 383, 478
BstNSI	RCATGY	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	2 cut(s)	83, 262
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	45
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	251, 298
BtsIMutI	CAGTG	1 cut(s)	449
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	2 cut(s)	266, 368
CviJI	RGCY	8 cut(s)	45, 61, 107, 208, 264, 290, 332, 481
CviKI_1	RGCY	8 cut(s)	45, 61, 107, 208, 264, 290, 332, 481
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	3 cut(s)	47, 69, 134
DpnI	GATC	2 cut(s)	93, 186
DpnII	GATC	2 cut(s)	91, 184
DraI	TTTAAA	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	209, 504
EcoNI	CCTNNNNNAGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	269, 371
FaiI	YATR	6 cut(s)	99, 141, 267, 369, 453, 467
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	2 cut(s)	265, 367
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	258, 285
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	269, 371
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HinfI	GANTC	2 cut(s)	353, 436
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	70, 228
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	6 cut(s)	223, 233, 235, 280, 285, 413
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	4 cut(s)	116, 175, 377, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 383, 478
HpyF3I	CTNAG	3 cut(s)	47, 69, 134
Hsp92II	CATG	2 cut(s)	269, 371
Kzo9I	GATC	2 cut(s)	91, 184
LmnI	GCTCC	2 cut(s)	104, 329
LpnPI	CCDG	3 cut(s)	161, 495, 511
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	93, 186
MboI	GATC	2 cut(s)	91, 184
MboII	GAAGA	4 cut(s)	88, 145, 262, 497
MfeI	CAATTG	1 cut(s)	323
MflI	RGATCY	1 cut(s)	184
MluCI	AATT	5 cut(s)	38, 252, 323, 460, 490
MnlI	CCTC	2 cut(s)	95, 198
MseI	TTAA	3 cut(s)	21, 159, 514
MslI	CAYNNNNRTG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	113, 383, 478
NdeII	GATC	2 cut(s)	91, 184
NlaIII	CATG	2 cut(s)	269, 371
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	371
OliI	CACNNNNGTG	1 cut(s)	368
PciI	ACATGT	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	353, 436
PkrI	GCNGC	1 cut(s)	480
PscI	ACATGT	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	21, 159, 514
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	2 cut(s)	91, 184
SetI	ASST	2 cut(s)	109, 334
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	5 cut(s)	38, 252, 323, 460, 490
SspMI	CTAG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	444
TaqI	TCGA	4 cut(s)	168, 192, 341, 388
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	5 cut(s)	38, 252, 323, 460, 490
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	353, 436
Tru1I	TTAA	3 cut(s)	21, 159, 514
Tru9I	TTAA	3 cut(s)	21, 159, 514
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	177, 345, 440
TspRI	CASTG	1 cut(s)	449
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	1 cut(s)	371
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.