Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

12503352 .. 12507065

Gene Structure 3714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G092400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGGAAATCACCGTTGCCTCCTGGTTTCCGGTTTTCTCCAACTGATGTAGAACTTGTACAATATTATTTGAAGAGGAAGGTAATGGGGAAAAGGCTCCATTTTAACTTCATTGCAGAGGTCGACATTCACAAGTATGCTCCTTGGGATCTTCCAGAAAAATCTTGTTGGCAAGGTGATCTAAAATGGTACTTCTTTTGTCCGACATCAAGGAAGTATCCAACTGGGGCTAGGGTGAAACGTGCCAACGAATGCGGTTACTGGAAGGCCACGGGAAAGGACAGATCTGTTCTTTACAATGGTGAAGTTTCCGGGTGGATAAAAACGTTGATCTTTCATAGAGGTCGAGCTCCAAAAGGAGAGAGAACAGATTGGGTTATGCATGAGTATAGGCTTGAAGCTAAGAACCTGGCTGATAGTGATGTGCTCCAGGACTCGTATGTGATCTGTATGATTTTCCAAAAAGATGGGCCAGGGCCTAGAAATGGTGCAGAATATGGTGCACCCTTTAAAGAGGAAGACTGGACTGATGATGAGGCTGAAATTTGTTCAGAAGCAGTCCCACATGCAAATATGCCTGAGCCAAACCTTGTGGTGCCGAGCAACTATAATAGTTCCATCATCACTAGCACACATTCCCCGGAGGGTATACACATAGGTCCTTCATCTGAATCGTGCATATCAGATGCTTTACCACCTTCTTGCAATGTTCTCCAATTGGTTTCCAGTAATCATGTTACAATGGAGAAGCCTCATGTTTCCAATGATGATATTCTGTCAATGTTGAATTGCTTTACTGAAGGAAGCACTTCCTTAATGAAAGAAAATGACAAAAATGAGGTTGTTGAAAGAGACAAATTAGCCTTTTTTTTCCCTGATGAGGGTCTTGGCTCTGCAACTTCAGAGCTTGGTAATGTTATTCCTTCTGGAAATGCTTGTGCTACACCTCATGTCAATAGTGATGATATTTATGAAGATTTAGGAGACTTGGGCAAGCTGGCTAGAGTGAGTGAAGATGGTTATAATTTCTCCACGGTGCATAATTCAGTCTGTGCTCCGGCTCAAATGCTGCTAGGTGACAATGACCAATTCTTGGAGCTGGATGATCTTGGTAGATCCGTTGAATTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

378

Amino Acids

42.15

Weight (kDa)

5.0

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1023
AccB1I	GGYRCC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	1093
AccI	GTMKAC	2 cut(s)	123, 649
AciI	CCGC	1 cut(s)	255
AclI	AACGTT	1 cut(s)	326
AclWI	GGATC	2 cut(s)	156, 1110
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	2 cut(s)	819, 885
AfaI	GTAC	2 cut(s)	60, 191
AfiI	CCNNNNNNNGG	4 cut(s)	485, 880, 881, 1093
AgsI	TTSAA	5 cut(s)	73, 398, 787, 848, 1124
AjnI	CCWGG	4 cut(s)	22, 408, 429, 472
AluBI	AGCT	5 cut(s)	350, 401, 907, 997, 1099
AluI	AGCT	5 cut(s)	350, 401, 907, 997, 1099
Alw21I	GWGCWC	4 cut(s)	352, 429, 505, 1057
Alw26I	GTCTC	2 cut(s)	846, 978
Alw44I	GTGCAC	1 cut(s)	501
AlwI	GGATC	2 cut(s)	156, 1110
AoxI	GGCC	3 cut(s)	267, 470, 476
ApaLI	GTGCAC	1 cut(s)	501
ApeKI	GCWGC	1 cut(s)	1069
ApoI	RAATTY	1 cut(s)	543
Asp700I	GAANNNNTTC	1 cut(s)	808
AspS9I	GGNCC	3 cut(s)	470, 476, 659
AsuC2I	CCSGG	2 cut(s)	313, 641
AsuHPI	GGTGA	5 cut(s)	3, 188, 247, 314, 1088
AvaII	GGWCC	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	4 cut(s)	352, 429, 505, 1057
BbvI	GCAGC	1 cut(s)	1056
BccI	CCATC	3 cut(s)	461, 626, 1010
BciT130I	CCWGG	4 cut(s)	24, 410, 431, 474
BciVI	GTATCC	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	313, 641
BcoDI	GTCTC	2 cut(s)	846, 978
BfaI	CTAG	5 cut(s)	231, 480, 627, 1002, 1073
BfuI	GTATCC	1 cut(s)	228
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	1 cut(s)	1070
BlsI	GCNGC	1 cut(s)	1071
Bme1390I	CCNGG	6 cut(s)	24, 313, 410, 431, 474, 641
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	3 cut(s)	470, 476, 659
BmiI	GGNNCC	2 cut(s)	98, 597
BmrFI	CCNGG	6 cut(s)	24, 313, 410, 431, 474, 641
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	676
BmuI	ACTGGG	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	579
BpuMI	CCSGG	2 cut(s)	313, 641
BsaJI	CCNNGG	5 cut(s)	143, 270, 473, 639, 1032
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	4 cut(s)	485, 880, 881, 1093
Bse1I	ACTGG	4 cut(s)	229, 266, 527, 726
Bse3DI	GCAATG	2 cut(s)	111, 712
BseBI	CCWGG	4 cut(s)	24, 410, 431, 474
BseDI	CCNNGG	5 cut(s)	143, 270, 473, 639, 1032
BseGI	GGATG	1 cut(s)	1108
BseLI	CCNNNNNNNGG	4 cut(s)	485, 880, 881, 1093
BseMI	GCAATG	2 cut(s)	111, 712
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	4 cut(s)	229, 266, 527, 726
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	1056
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	269, 472, 478
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	4 cut(s)	352, 429, 505, 1057
BsiSI	CCGG	4 cut(s)	31, 312, 641, 1058
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	4 cut(s)	485, 880, 881, 1093
BsmAI	GTCTC	2 cut(s)	846, 978
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	269, 472, 478
Bsp1286I	GDGCHC	4 cut(s)	352, 429, 505, 1057
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	7 cut(s)	148, 178, 284, 330, 444, 1105, 1115
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	3 cut(s)	269, 472, 478
BspCNI	CTCAG	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	98, 597
BspPI	GGATC	2 cut(s)	156, 1110
BspT107I	GGYRCC	1 cut(s)	595
BsrDI	GCAATG	2 cut(s)	111, 712
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	4 cut(s)	229, 266, 527, 726
BssECI	CCNNGG	5 cut(s)	143, 270, 473, 639, 1032
BssMI	GATC	7 cut(s)	148, 178, 284, 330, 444, 1105, 1115
BssNAI	GTATAC	1 cut(s)	650
BssT1I	CCWWGG	1 cut(s)	143
Bst1107I	GTATAC	1 cut(s)	650
Bst2UI	CCWGG	4 cut(s)	24, 410, 431, 474
Bst4CI	ACNGT	2 cut(s)	15, 1036
Bst6I	CTCTTC	1 cut(s)	68
BstAUI	TGTACA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	995, 999
BstDEI	CTNAG	2 cut(s)	402, 579
BstDSI	CCRYGG	2 cut(s)	270, 1032
BstF5I	GGATG	1 cut(s)	1108
BstKTI	GATC	7 cut(s)	151, 181, 287, 333, 447, 1108, 1118
BstMAI	GTCTC	2 cut(s)	846, 978
BstMBI	GATC	7 cut(s)	148, 178, 284, 330, 444, 1105, 1115
BstNI	CCWGG	4 cut(s)	24, 410, 431, 474
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	6 cut(s)	22, 311, 408, 429, 472, 639
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	1056
BstV2I	GAAGAC	1 cut(s)	525
BstX2I	RGATCY	3 cut(s)	148, 284, 1115
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	3 cut(s)	148, 284, 1115
BstZ17I	GTATAC	1 cut(s)	650
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	269, 472, 478
BtgI	CCRYGG	2 cut(s)	270, 1032
BtsCI	GGATG	1 cut(s)	1108
Cac8I	GCNNGC	2 cut(s)	995, 999
Cfr13I	GGNCC	3 cut(s)	470, 476, 659
Csp6I	GTAC	2 cut(s)	59, 190
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviAII	CATG	6 cut(s)	383, 566, 734, 755, 950, 1131
CviQI	GTAC	2 cut(s)	59, 190
DdeI	CTNAG	2 cut(s)	402, 579
DpnI	GATC	7 cut(s)	150, 180, 286, 332, 446, 1107, 1117
DpnII	GATC	7 cut(s)	148, 178, 284, 330, 444, 1105, 1115
DraI	TTTAAA	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	659
Eco53kI	GAGCTC	1 cut(s)	350
Eco57I	CTGAAG	2 cut(s)	819, 885
EcoICRI	GAGCTC	1 cut(s)	350
EcoO109I	RGGNCCY	2 cut(s)	476, 659
EcoRII	CCWGG	4 cut(s)	22, 408, 429, 472
EcoT14I	CCWWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	6 cut(s)	386, 569, 737, 758, 953, 1134
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	6 cut(s)	382, 565, 733, 754, 949, 1130
FblI	GTMKAC	2 cut(s)	123, 649
Fnu4HI	GCNGC	1 cut(s)	1070
FokI	GGATG	1 cut(s)	1115
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	1070
FspBI	CTAG	5 cut(s)	231, 480, 627, 1002, 1073
GluI	GCNGC	1 cut(s)	1070
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	3 cut(s)	269, 472, 478
HapII	CCGG	4 cut(s)	31, 312, 641, 1058
Hin1II	CATG	6 cut(s)	386, 569, 737, 758, 953, 1134
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	434, 671
HpaII	CCGG	4 cut(s)	31, 312, 641, 1058
HphI	GGTGA	5 cut(s)	3, 188, 247, 314, 1088
Hpy166II	GTNNAC	3 cut(s)	124, 503, 650
Hpy188I	TCNGA	5 cut(s)	204, 553, 670, 685, 904
Hpy188III	TCNNGA	2 cut(s)	155, 927
Hpy8I	GTNNAC	3 cut(s)	124, 503, 650
HpyAV	CCTTC	6 cut(s)	73, 259, 672, 708, 794, 933
HpyCH4III	ACNGT	2 cut(s)	15, 1036
HpyCH4IV	ACGT	2 cut(s)	241, 326
HpyCH4V	TGCA	9 cut(s)	116, 382, 491, 503, 569, 678, 705, 896, 1039
HpyF3I	CTNAG	2 cut(s)	402, 579
HpySE526I	ACGT	2 cut(s)	241, 326
Hsp92II	CATG	6 cut(s)	386, 569, 737, 758, 953, 1134
Kzo9I	GATC	7 cut(s)	148, 178, 284, 330, 444, 1105, 1115
LmnI	GCTCC	6 cut(s)	102, 145, 355, 432, 1060, 1096
Lsp1109I	GCAGC	1 cut(s)	1056
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	5 cut(s)	231, 480, 627, 1002, 1073
MaeII	ACGT	2 cut(s)	241, 326
MaeIII	GTNAC	3 cut(s)	257, 736, 1076
MalI	GATC	7 cut(s)	150, 180, 286, 332, 446, 1107, 1117
MboI	GATC	7 cut(s)	148, 178, 284, 330, 444, 1105, 1115
MboII	GAAGA	5 cut(s)	85, 143, 530, 986, 1025
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	3 cut(s)	148, 284, 1115
MhlI	GDGCHC	4 cut(s)	352, 429, 505, 1057
MluCI	AATT	8 cut(s)	543, 716, 787, 857, 1024, 1042, 1088, 1124
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	3 cut(s)	65, 227, 245
Mph1103I	ATGCAT	1 cut(s)	384
MroXI	GAANNNNTTC	1 cut(s)	808
MseI	TTAA	3 cut(s)	105, 510, 815
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	4 cut(s)	31, 312, 641, 1058
MspR9I	CCNGG	6 cut(s)	24, 313, 410, 431, 474, 641
MunI	CAATTG	1 cut(s)	716
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	4 cut(s)	24, 410, 431, 474
NciI	CCSGG	2 cut(s)	313, 641
NdeII	GATC	7 cut(s)	148, 178, 284, 330, 444, 1105, 1115
NlaIII	CATG	6 cut(s)	386, 569, 737, 758, 953, 1134
NlaIV	GGNNCC	2 cut(s)	98, 597
NmeAIII	GCCGAG	1 cut(s)	624
NmuCI	GTSAC	1 cut(s)	1076
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	1 cut(s)	569
PctI	GAATGC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	808
PfeI	GAWTC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	1093
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	1071
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	659
PsiI	TTATAA	1 cut(s)	1023
Psp124BI	GAGCTC	1 cut(s)	352
Psp1406I	AACGTT	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	4 cut(s)	22, 408, 429, 472
PspGI	CCWGG	4 cut(s)	22, 408, 429, 472
PspN4I	GGNNCC	2 cut(s)	98, 597
PspPI	GGNCC	3 cut(s)	470, 476, 659
PspPPI	RGGWCCY	1 cut(s)	659
PsuI	RGATCY	3 cut(s)	148, 284, 1115
RsaI	GTAC	2 cut(s)	60, 191
RsaNI	GTAC	2 cut(s)	59, 190
RseI	CAYNNNNRTG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	105, 510, 815
SatI	GCNGC	1 cut(s)	1070
Sau3AI	GATC	7 cut(s)	148, 178, 284, 330, 444, 1105, 1115
Sau96I	GGNCC	3 cut(s)	470, 476, 659
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	6 cut(s)	24, 313, 410, 431, 474, 641
SduI	GDGCHC	4 cut(s)	352, 429, 505, 1057
SfaNI	GCATC	1 cut(s)	676
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	8 cut(s)	543, 716, 787, 857, 1024, 1042, 1088, 1124
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	5 cut(s)	231, 480, 627, 1002, 1073
SstI	GAGCTC	1 cut(s)	352
StyD4I	CCNGG	6 cut(s)	22, 311, 408, 429, 472, 639
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	15, 1036
TaiI	ACGT	2 cut(s)	244, 329
TaqI	TCGA	2 cut(s)	123, 346
TasI	AATT	8 cut(s)	543, 716, 787, 857, 1024, 1042, 1088, 1124
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	3 cut(s)	105, 510, 815
Tru9I	TTAA	3 cut(s)	105, 510, 815
TseFI	GTSAC	1 cut(s)	1076
TseI	GCWGC	1 cut(s)	1069
Tsp45I	GTSAC	1 cut(s)	1076
TspDTI	ATGAA	5 cut(s)	100, 326, 654, 833, 987
TspGWI	ACGGA	1 cut(s)	1108
Van91I	CCANNNNNTGG	1 cut(s)	1093
VneI	GTGCAC	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	1 cut(s)	543
XceI	RCATGY	1 cut(s)	569
XmiI	GTMKAC	2 cut(s)	123, 649
XmnI	GAANNNNTTC	1 cut(s)	808
XspI	CTAG	5 cut(s)	231, 480, 627, 1002, 1073
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.