Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

4011026 .. 4014329

Gene Structure 3304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1030400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGGAAAGGGAAATCATCGTTGCCTCCTGGTTTTCGGTTTTGTCCAACTGATGTAGAGCTTGTACAATATTATTTGAAGAGGAAAGTAATGGGGAAAAGACTCCCTTATAACTTTGTTGCAGAGGTCGACATTCATAAGTATGCTCCTTGGGATCTTCCAGAAAAATCTAGCTGGCAAAGTGGAGATTTAAAATGGTACTTCTTTTGTCCTACAGAAAGGAAGTATCCAACTGGGGCTAGAGCGAAACGTACAACTGAACGTGGGTACTGGAAGGCCACGGGAAATGACAGATCTGTTCTTTACAATGGTGAAGTTGCAGGAAAGATAAAAACATTGATTTTTCATACAGGTCGAGCTCCAAAAGGAGAGCGAACAGACTGGGTTATGCATGAGTATAGGCTTGAATCTAAGGACCTAGCTAATCGTGGCGTGCCTCAGGAATCGTATGTGCTCTGTACCATTTTTCAAAAAGAAGGGCCAGGGCCAAAAAATGGTGCACAATATGGTGCGCCCCTTATGGAGGAAGACTGGAGTGATGATGAGGCTGAAAATTGTTCAGAAGCAGTCGCACATGCAAATATGCCTGAACCAAACCTTGTGCTGCCGAGTAACTACAATAGCACGTATTCCCATGAAAGTATACACATACGTTCTTCATCTGAATCGTGCATATCAGATGTTGTACCACTTTCTTGCCATGTTCCCCAACTGGTTTCCAGTAATCATGCTACAGTTGAGGAGCCTCATACTTCCAATGATGATGATATCCTGTCAATATTGGCTTGCTTCTCGGAAGAAAGCCCTTCCTTAATCAAAGAAAACGAAAAAAATGAGGAGCTTGGTAATGTTGTTCCTATCGGAAATGCTAGTGCTACACCTCACGTCGTTAGTAATGATATTTACGTCACTTTAGGAGATTTGGGCAAGGTGGCTAGAGTAGGTGAAGATGGATGTAGTTTCTCCAGTTTGCCTAATTCTGTCTGTGCTACGGGTCAAATGCCGCGAGGTGACGATGGGCAATATTTGGAGCTGGATGATCTTGGCGAACTATTTAATTACCATGATTCTACGCACACTCGGCCTCCTTCTATGTTCGGTGAGCCTCAAACTTTGCTGGGAGAGATGCCTTTTCAGGGTGAGACCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

384

Amino Acids

42.57

Weight (kDa)

5.07

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 135	1.9e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccI	GTMKAC	2 cut(s)	129, 643
AccII	CGCG	1 cut(s)	1006
AciI	CCGC	1 cut(s)	1004
AclWI	GGATC	1 cut(s)	162
AfaI	GTAC	6 cut(s)	66, 200, 253, 269, 460, 687
AfiI	CCNNNNNNNGG	3 cut(s)	494, 523, 1136
AgsI	TTSAA	3 cut(s)	79, 407, 470
AjiI	CACGTC	1 cut(s)	886
AjnI	CCWGG	2 cut(s)	28, 481
AluBI	AGCT	6 cut(s)	61, 174, 359, 422, 841, 1033
AluI	AGCT	6 cut(s)	61, 174, 359, 422, 841, 1033
Alw21I	GWGCWC	3 cut(s)	361, 456, 502
Alw26I	GTCTC	1 cut(s)	1136
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	162
AoxI	GGCC	4 cut(s)	276, 479, 485, 1082
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	415, 479, 485
AsuHPI	GGTGA	5 cut(s)	323, 956, 1022, 1112, 1151
AvaII	GGWCC	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	3 cut(s)	361, 456, 502
BbvI	GCAGC	1 cut(s)	591
BccI	CCATC	2 cut(s)	944, 1010
BciT130I	CCWGG	2 cut(s)	30, 483
BciVI	GTATCC	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	1136
BfaI	CTAG	5 cut(s)	171, 240, 419, 870, 936
BfmI	CTRYAG	2 cut(s)	213, 732
BfuI	GTATCC	1 cut(s)	237
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	2 cut(s)	605, 1004
BlsI	GCNGC	2 cut(s)	606, 1005
Bme1390I	CCNGG	2 cut(s)	30, 483
Bme18I	GGWCC	1 cut(s)	415
BmgBI	CACGTC	1 cut(s)	886
BmgT120I	GGNCC	3 cut(s)	415, 479, 485
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	2 cut(s)	30, 483
BmrI	ACTGGG	2 cut(s)	243, 391
BmsI	GCATC	1 cut(s)	1116
BmuI	ACTGGG	2 cut(s)	243, 391
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	2 cut(s)	553, 949
BsaAI	YACGTR	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	1136
BsaJI	CCNNGG	3 cut(s)	149, 279, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	1069, 1099
Bsc4I	CCNNNNNNNGG	3 cut(s)	494, 523, 1136
Bse1I	ACTGG	8 cut(s)	238, 275, 386, 536, 717, 720, 966, 1146
Bse21I	CCTNAGG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	30, 483
BseDI	CCNNGG	3 cut(s)	149, 279, 482
BseGI	GGATG	2 cut(s)	959, 1042
BseLI	CCNNNNNNNGG	3 cut(s)	494, 523, 1136
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	8 cut(s)	238, 275, 386, 536, 717, 720, 966, 1146
BseRI	GAGGAG	2 cut(s)	755, 851
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	591
BseYI	CCCAGC	1 cut(s)	1117
Bsh1236I	CGCG	1 cut(s)	1006
BshFI	GGCC	4 cut(s)	278, 481, 487, 1084
BsiHKAI	GWGCWC	3 cut(s)	361, 456, 502
BslI	CCNNNNNNNGG	3 cut(s)	494, 523, 1136
BsmAI	GTCTC	1 cut(s)	1136
BsnI	GGCC	4 cut(s)	278, 481, 487, 1084
Bso31I	GGTCTC	1 cut(s)	1136
Bsp1286I	GDGCHC	3 cut(s)	361, 456, 502
Bsp1407I	TGTACA	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	154, 293, 1039
BspACI	CCGC	1 cut(s)	1004
BspANI	GGCC	4 cut(s)	278, 481, 487, 1084
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	1006
BspLI	GGNNCC	1 cut(s)	744
BspPI	GGATC	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	1136
BsrGI	TGTACA	1 cut(s)	64
BsrI	ACTGG	8 cut(s)	238, 275, 386, 536, 717, 720, 966, 1146
BssECI	CCNNGG	3 cut(s)	149, 279, 482
BssMI	GATC	3 cut(s)	154, 293, 1039
BssNAI	GTATAC	1 cut(s)	644
BssT1I	CCWWGG	1 cut(s)	149
Bst1107I	GTATAC	1 cut(s)	644
Bst2UI	CCWGG	2 cut(s)	30, 483
Bst4CI	ACNGT	1 cut(s)	736
Bst6I	CTCTTC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	627
BstC8I	GCNNGC	3 cut(s)	176, 434, 787
BstDEI	CTNAG	2 cut(s)	411, 438
BstDSI	CCRYGG	1 cut(s)	279
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	959, 1042
BstFNI	CGCG	1 cut(s)	1006
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	3 cut(s)	157, 296, 1042
BstMAI	GTCTC	1 cut(s)	1136
BstMBI	GATC	3 cut(s)	154, 293, 1039
BstMWI	GCNNNNNNNGC	1 cut(s)	1081
BstNI	CCWGG	2 cut(s)	30, 483
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	28, 481
BstSFI	CTRYAG	2 cut(s)	213, 732
BstSLI	GKGCMC	1 cut(s)	502
BstUI	CGCG	1 cut(s)	1006
BstV1I	GCAGC	1 cut(s)	591
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	154, 293
BstYI	RGATCY	2 cut(s)	154, 293
BstZ17I	GTATAC	1 cut(s)	644
Bsu36I	CCTNAGG	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	278, 481, 487, 1084
BtgI	CCRYGG	1 cut(s)	279
BtrI	CACGTC	1 cut(s)	886
BtsCI	GGATG	2 cut(s)	959, 1042
Cac8I	GCNNGC	3 cut(s)	176, 434, 787
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	415, 479, 485
Csp6I	GTAC	6 cut(s)	65, 199, 252, 268, 459, 686
CviAII	CATG	6 cut(s)	392, 575, 635, 701, 728, 1064
CviQI	GTAC	6 cut(s)	65, 199, 252, 268, 459, 686
DdeI	CTNAG	2 cut(s)	411, 438
DpnI	GATC	3 cut(s)	156, 295, 1041
DpnII	GATC	3 cut(s)	154, 293, 1039
DraI	TTTAAA	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	1136
Eco32I	GATATC	1 cut(s)	769
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	28, 481
EcoRV	GATATC	1 cut(s)	769
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	6 cut(s)	395, 578, 638, 704, 731, 1067
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FatI	CATG	6 cut(s)	391, 574, 634, 700, 727, 1063
FblI	GTMKAC	2 cut(s)	129, 643
Fnu4HI	GCNGC	2 cut(s)	605, 1004
FokI	GGATG	2 cut(s)	966, 1049
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	2 cut(s)	605, 1004
FspBI	CTAG	5 cut(s)	171, 240, 419, 870, 936
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	2 cut(s)	605, 1004
GsaI	CCCAGC	1 cut(s)	1121
GsuI	CTGGAG	2 cut(s)	553, 949
HaeIII	GGCC	4 cut(s)	278, 481, 487, 1084
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	6 cut(s)	395, 578, 638, 704, 731, 1067
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	102, 407, 443, 665, 1067
HphI	GGTGA	5 cut(s)	323, 956, 1022, 1112, 1151
Hpy166II	GTNNAC	3 cut(s)	130, 500, 644
Hpy188I	TCNGA	5 cut(s)	562, 664, 679, 796, 863
Hpy188III	TCNNGA	2 cut(s)	161, 440
Hpy8I	GTNNAC	3 cut(s)	130, 500, 644
Hpy99I	CGWCG	1 cut(s)	890
HpyAV	CCTTC	4 cut(s)	268, 470, 816, 1098
HpyCH4III	ACNGT	1 cut(s)	736
HpyCH4IV	ACGT	6 cut(s)	250, 262, 626, 652, 885, 906
HpyCH4V	TGCA	6 cut(s)	122, 320, 391, 500, 578, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1081
HpyF3I	CTNAG	2 cut(s)	411, 438
HpySE526I	ACGT	6 cut(s)	250, 262, 626, 652, 885, 906
Hsp92II	CATG	6 cut(s)	395, 578, 638, 704, 731, 1067
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	154, 293, 1039
LmnI	GCTCC	5 cut(s)	151, 364, 742, 838, 1030
Lsp1109I	GCAGC	1 cut(s)	591
LweI	GCATC	1 cut(s)	1116
MaeI	CTAG	5 cut(s)	171, 240, 419, 870, 936
MaeII	ACGT	6 cut(s)	250, 262, 626, 652, 885, 906
MaeIII	GTNAC	3 cut(s)	611, 907, 1010
MalI	GATC	3 cut(s)	156, 295, 1041
MboI	GATC	3 cut(s)	154, 293, 1039
MboII	GAAGA	6 cut(s)	91, 149, 539, 648, 809, 959
MflI	RGATCY	2 cut(s)	154, 293
MhlI	GDGCHC	3 cut(s)	361, 456, 502
MluCI	AATT	3 cut(s)	553, 976, 1057
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	71, 254
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	3 cut(s)	191, 812, 1056
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	30, 483
MvaI	CCWGG	2 cut(s)	30, 483
MvnI	CGCG	1 cut(s)	1006
MwoI	GCNNNNNNNGC	1 cut(s)	1081
NdeII	GATC	3 cut(s)	154, 293, 1039
NlaIII	CATG	6 cut(s)	395, 578, 638, 704, 731, 1067
NlaIV	GGNNCC	1 cut(s)	744
NmeAIII	GCCGAG	2 cut(s)	633, 1060
NmuCI	GTSAC	2 cut(s)	907, 1010
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	578
PfeI	GAWTC	4 cut(s)	407, 443, 665, 1067
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	2 cut(s)	606, 1005
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	627
PpuMI	RGGWCCY	1 cut(s)	415
PsiI	TTATAA	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	2 cut(s)	28, 481
PspFI	CCCAGC	1 cut(s)	1117
PspGI	CCWGG	2 cut(s)	28, 481
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	3 cut(s)	415, 479, 485
PspPPI	RGGWCCY	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	154, 293
RsaI	GTAC	6 cut(s)	66, 200, 253, 269, 460, 687
RsaNI	GTAC	6 cut(s)	65, 199, 252, 268, 459, 686
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	361
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	191, 812, 1056
SatI	GCNGC	2 cut(s)	605, 1004
Sau3AI	GATC	3 cut(s)	154, 293, 1039
Sau96I	GGNCC	3 cut(s)	415, 479, 485
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	30, 483
SduI	GDGCHC	3 cut(s)	361, 456, 502
SfaNI	GCATC	1 cut(s)	1116
SfcI	CTRYAG	2 cut(s)	213, 732
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	3 cut(s)	553, 976, 1057
SsiI	CCGC	1 cut(s)	1004
SspI	AATATT	3 cut(s)	71, 780, 1025
SspMI	CTAG	5 cut(s)	171, 240, 419, 870, 936
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	28, 481
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	736
TaiI	ACGT	6 cut(s)	253, 265, 629, 655, 888, 909
TaqI	TCGA	2 cut(s)	129, 355
TasI	AATT	3 cut(s)	553, 976, 1057
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	1 cut(s)	1006
TfiI	GAWTC	4 cut(s)	407, 443, 665, 1067
Tru1I	TTAA	3 cut(s)	191, 812, 1056
Tru9I	TTAA	3 cut(s)	191, 812, 1056
TseFI	GTSAC	2 cut(s)	907, 1010
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	2 cut(s)	907, 1010
TspDTI	ATGAA	4 cut(s)	125, 335, 648, 651
Van91I	CCANNNNNTGG	1 cut(s)	494
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	521
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	2 cut(s)	129, 643
XspI	CTAG	5 cut(s)	171, 240, 419, 870, 936
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.