Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

3249694 .. 3253129

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGAAACCACCGTTGCCTCCTGGTTTCCGGTTTTCTCCAACTGATGTAGAACTTGTACGGTATTATTTGAAGAGGAAGGTAATGGGGAAAAGGCTCCATTCTAACTTCATTGCAGAGGTCGACATTCACAAGTATGCTCCTTGGGATCTTCCAGAAAAATCTGGCTGGCAGAGTGGAGATCTAAAATGGTACTTCTTTTGTCCAACAGCAAGGAAGTATCCAACTGGAGTTAGAGTGCAACGTGGCACCGAGTGTGGTTACTGGAAGTCCACGGGAAAGGATAGATCTGTTCTTTACAATGGTGAAGTTTCCGGGTGGAAAAAAATATTGATCTTTCATAAAGGTCGATCCCCAAAAGGAGAAAGAACAGATTGGGTTATGCACGAGTATAGGCTTGAAGCTAAGGACCTGGCTGATAGTGGTGTGCCACATGACTCATATGTGATCTGTATGATTTTCCACAAAGATGGGTGGGGGCCCAAAAATGGTGCACAATATGGTGCACCCTTTAAAGAGGAAGACTGGACTGATGATGAGGCTGAAATTTGTTCAGAAGCAGTCCCACATGAAAACATGCCTGAGCCAAACCTTGTAGTGCAGAGCAACTGTAATAGTTCTGTCACTACTAGCGGACATTCCCCGAAGGATATACACTTAGGTCCTTCTGAATCGTGCATATCAGATGTTTTACCACCTTCTTGCAATGCTCTCCAATTGGTTTCCAGTAATCATGTTACAATGGAGAAGCTTCGTGGTTCCGGTGATGACATCCTGCCAATGTTGAATTGCTTCACTGAAGGAAGCACTTCCTTAATGAAAGTAAATGACAAAAATGAGGAGCTTGGTAACGTCATTCATTCTGGAAATGCTAGTGCTACACCTAATGTCAATGGTGATGATATTTATGAAGATTTAGGAGACTTGGGGAAGATGGCTGGAGTGAGTGAAGATGGATTTTATTTCTCCAATGTGCATAATTCAATCTGTGCTCCGGCTCAAATGCAGCTAGGTGACAATGACCAATTCTTGGAGCTGGATGATCTATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

352

Amino Acids

39.17

Weight (kDa)

5.24

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	1030
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	1 cut(s)	633
AclWI	GGATC	2 cut(s)	156, 345
AcsI	RAATTY	1 cut(s)	546
AcuI	CTGAAG	1 cut(s)	819
AdeI	CACNNNGTG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	60, 194
AfiI	CCNNNNNNNGG	2 cut(s)	488, 1030
AgsI	TTSAA	4 cut(s)	73, 401, 787, 984
AjnI	CCWGG	2 cut(s)	22, 411
AluBI	AGCT	5 cut(s)	404, 751, 844, 1009, 1036
AluI	AGCT	5 cut(s)	404, 751, 844, 1009, 1036
Alw21I	GWGCWC	3 cut(s)	496, 508, 994
Alw26I	GTCTC	1 cut(s)	915
Alw44I	GTGCAC	2 cut(s)	492, 504
AlwI	GGATC	2 cut(s)	156, 345
AoxI	GGCC	1 cut(s)	479
ApaI	GGGCCC	1 cut(s)	483
ApaLI	GTGCAC	2 cut(s)	492, 504
ApeKI	GCWGC	1 cut(s)	1006
ApoI	RAATTY	1 cut(s)	546
Asp700I	GAANNNNTTC	2 cut(s)	791, 808
AspS9I	GGNCC	4 cut(s)	409, 479, 480, 662
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	4 cut(s)	317, 776, 908, 1025
AvaII	GGWCC	2 cut(s)	409, 662
BaeGI	GKGCMC	3 cut(s)	483, 496, 508
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	483
BauI	CACGAG	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	3 cut(s)	496, 508, 994
BbvI	GCAGC	1 cut(s)	1018
BccI	CCATC	3 cut(s)	464, 928, 947
BciT130I	CCWGG	2 cut(s)	24, 413
BciVI	GTATCC	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	915
BfaI	CTAG	3 cut(s)	630, 873, 1010
BfuI	GTATCC	1 cut(s)	231
BglII	AGATCT	2 cut(s)	181, 287
BisI	GCNGC	1 cut(s)	1007
BlsI	GCNGC	1 cut(s)	1008
Bme1390I	CCNGG	3 cut(s)	24, 316, 413
Bme18I	GGWCC	2 cut(s)	409, 662
BmgT120I	GGNCC	4 cut(s)	409, 479, 480, 662
BmiI	GGNNCC	5 cut(s)	98, 250, 480, 481, 760
BmrFI	CCNGG	3 cut(s)	24, 316, 413
BpiI	GAAGAC	1 cut(s)	528
BpmI	CTGGAG	2 cut(s)	249, 960
Bpu10I	CCTNAGC	2 cut(s)	405, 582
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	143, 273
BsaWI	WCCGGW	2 cut(s)	30, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	488, 1030
Bse1I	ACTGG	4 cut(s)	232, 269, 530, 726
Bse3DI	GCAATG	2 cut(s)	111, 712
BseBI	CCWGG	2 cut(s)	24, 413
BseDI	CCNNGG	2 cut(s)	143, 273
BseGI	GGATG	2 cut(s)	771, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	488, 1030
BseMI	GCAATG	2 cut(s)	111, 712
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	4 cut(s)	232, 269, 530, 726
BseRI	GAGGAG	1 cut(s)	854
BseSI	GKGCMC	3 cut(s)	483, 496, 508
BseXI	GCAGC	1 cut(s)	1018
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	1 cut(s)	481
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	3 cut(s)	496, 508, 994
BsiSI	CCGG	4 cut(s)	31, 315, 762, 995
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	488, 1030
BsmAI	GTCTC	1 cut(s)	915
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	481
Bsp120I	GGGCCC	1 cut(s)	479
Bsp1286I	GDGCHC	4 cut(s)	483, 496, 508, 994
Bsp143I	GATC	7 cut(s)	148, 181, 287, 333, 350, 447, 1042
BspACI	CCGC	1 cut(s)	633
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	5 cut(s)	98, 250, 480, 481, 760
BspPI	GGATC	2 cut(s)	156, 345
BspT107I	GGYRCC	1 cut(s)	248
BsrDI	GCAATG	2 cut(s)	111, 712
BsrI	ACTGG	4 cut(s)	232, 269, 530, 726
BssECI	CCNNGG	2 cut(s)	143, 273
BssMI	GATC	7 cut(s)	148, 181, 287, 333, 350, 447, 1042
BssSI	CACGAG	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	143
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	24, 413
Bst4CI	ACNGT	3 cut(s)	15, 63, 611
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	3 cut(s)	405, 582, 658
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	771, 1045
BstKTI	GATC	7 cut(s)	151, 184, 290, 336, 353, 450, 1045
BstMAI	GTCTC	1 cut(s)	915
BstMBI	GATC	7 cut(s)	148, 181, 287, 333, 350, 447, 1042
BstNI	CCWGG	2 cut(s)	24, 413
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	3 cut(s)	22, 314, 411
BstSLI	GKGCMC	3 cut(s)	483, 496, 508
BstV1I	GCAGC	1 cut(s)	1018
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	3 cut(s)	148, 181, 287
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	3 cut(s)	148, 181, 287
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	771, 1045
BtsIMutI	CAGTG	1 cut(s)	795
Cac8I	GCNNGC	1 cut(s)	170
Cfr13I	GGNCC	4 cut(s)	409, 479, 480, 662
Csp6I	GTAC	2 cut(s)	59, 193
CviAII	CATG	5 cut(s)	434, 569, 577, 734, 1050
CviQI	GTAC	2 cut(s)	59, 193
DdeI	CTNAG	3 cut(s)	405, 582, 658
DpnI	GATC	7 cut(s)	150, 183, 289, 335, 352, 449, 1044
DpnII	GATC	7 cut(s)	148, 181, 287, 333, 350, 447, 1042
DraI	TTTAAA	1 cut(s)	514
DraIII	CACNNNGTG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	483
Eco47I	GGWCC	2 cut(s)	409, 662
Eco57I	CTGAAG	1 cut(s)	819
EcoO109I	RGGNCCY	3 cut(s)	409, 479, 662
EcoRII	CCWGG	2 cut(s)	22, 411
EcoT14I	CCWWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	5 cut(s)	437, 572, 580, 737, 1053
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	5 cut(s)	433, 568, 576, 733, 1049
FauNDI	CATATG	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	1007
FokI	GGATG	2 cut(s)	758, 1052
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	1 cut(s)	1007
FspBI	CTAG	3 cut(s)	630, 873, 1010
GluI	GCNGC	1 cut(s)	1007
GsuI	CTGGAG	2 cut(s)	249, 960
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	4 cut(s)	31, 315, 762, 995
Hin1II	CATG	5 cut(s)	437, 572, 580, 737, 1053
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	2 cut(s)	437, 671
HpaII	CCGG	4 cut(s)	31, 315, 762, 995
HphI	GGTGA	4 cut(s)	317, 776, 908, 1025
Hpy166II	GTNNAC	4 cut(s)	124, 273, 494, 506
Hpy188I	TCNGA	3 cut(s)	556, 670, 685
Hpy188III	TCNNGA	2 cut(s)	155, 864
Hpy8I	GTNNAC	4 cut(s)	124, 273, 494, 506
HpyAV	CCTTC	5 cut(s)	73, 640, 675, 708, 794
HpyCH4III	ACNGT	3 cut(s)	15, 63, 611
HpyCH4IV	ACGT	2 cut(s)	244, 852
HpyF3I	CTNAG	3 cut(s)	405, 582, 658
HpySE526I	ACGT	2 cut(s)	244, 852
Hsp92II	CATG	5 cut(s)	437, 572, 580, 737, 1053
Kzo9I	GATC	7 cut(s)	148, 181, 287, 333, 350, 447, 1042
LmnI	GCTCC	5 cut(s)	102, 145, 841, 997, 1033
Lsp1109I	GCAGC	1 cut(s)	1018
MaeI	CTAG	3 cut(s)	630, 873, 1010
MaeII	ACGT	2 cut(s)	244, 852
MaeIII	GTNAC	5 cut(s)	260, 622, 736, 848, 1013
MalI	GATC	7 cut(s)	150, 183, 289, 335, 352, 449, 1044
MboI	GATC	7 cut(s)	148, 181, 287, 333, 350, 447, 1042
MboII	GAAGA	6 cut(s)	85, 143, 533, 923, 943, 962
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	3 cut(s)	148, 181, 287
MhlI	GDGCHC	4 cut(s)	483, 496, 508, 994
MluCI	AATT	5 cut(s)	546, 716, 787, 979, 1025
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	3 cut(s)	65, 230, 248
MnlI	CCTC	6 cut(s)	30, 69, 112, 511, 532, 832
MroXI	GAANNNNTTC	2 cut(s)	791, 808
MseI	TTAA	2 cut(s)	513, 815
MslI	CAYNNNNRTG	2 cut(s)	135, 468
MspI	CCGG	4 cut(s)	31, 315, 762, 995
MspR9I	CCNGG	3 cut(s)	24, 316, 413
MunI	CAATTG	1 cut(s)	716
MvaI	CCWGG	2 cut(s)	24, 413
NciI	CCSGG	1 cut(s)	316
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	7 cut(s)	148, 181, 287, 333, 350, 447, 1042
NlaIII	CATG	5 cut(s)	437, 572, 580, 737, 1053
NlaIV	GGNNCC	5 cut(s)	98, 250, 480, 481, 760
NmuCI	GTSAC	2 cut(s)	622, 1013
NspI	RCATGY	1 cut(s)	580
PdmI	GAANNNNTTC	2 cut(s)	791, 808
PfeI	GAWTC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	1030
PkrI	GCNGC	1 cut(s)	1008
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	2 cut(s)	409, 662
Psp5II	RGGWCCY	2 cut(s)	409, 662
Psp6I	CCWGG	2 cut(s)	22, 411
PspGI	CCWGG	2 cut(s)	22, 411
PspN4I	GGNNCC	5 cut(s)	98, 250, 480, 481, 760
PspOMI	GGGCCC	1 cut(s)	479
PspPI	GGNCC	4 cut(s)	409, 479, 480, 662
PspPPI	RGGWCCY	2 cut(s)	409, 662
PsuI	RGATCY	3 cut(s)	148, 181, 287
RsaI	GTAC	2 cut(s)	60, 194
RsaNI	GTAC	2 cut(s)	59, 193
RseI	CAYNNNNRTG	2 cut(s)	135, 468
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	513, 815
SatI	GCNGC	1 cut(s)	1007
Sau3AI	GATC	7 cut(s)	148, 181, 287, 333, 350, 447, 1042
Sau96I	GGNCC	4 cut(s)	409, 479, 480, 662
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	3 cut(s)	24, 316, 413
SduI	GDGCHC	4 cut(s)	483, 496, 508, 994
SinI	GGWCC	2 cut(s)	409, 662
SmiMI	CAYNNNNRTG	2 cut(s)	135, 468
Sse9I	AATT	5 cut(s)	546, 716, 787, 979, 1025
SsiI	CCGC	1 cut(s)	633
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	3 cut(s)	630, 873, 1010
StyD4I	CCNGG	3 cut(s)	22, 314, 411
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	3 cut(s)	15, 63, 611
TaiI	ACGT	2 cut(s)	247, 855
TaqI	TCGA	2 cut(s)	123, 349
TasI	AATT	5 cut(s)	546, 716, 787, 979, 1025
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	2 cut(s)	513, 815
Tru9I	TTAA	2 cut(s)	513, 815
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	2 cut(s)	622, 1013
TseI	GCWGC	1 cut(s)	1006
Tsp45I	GTSAC	2 cut(s)	622, 1013
TspDTI	ATGAA	6 cut(s)	100, 329, 585, 833, 848, 924
TspRI	CASTG	1 cut(s)	802
Van91I	CCANNNNNTGG	1 cut(s)	1030
VneI	GTGCAC	2 cut(s)	492, 504
VpaK11BI	GGWCC	2 cut(s)	409, 662
XapI	RAATTY	1 cut(s)	546
XceI	RCATGY	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	2 cut(s)	791, 808
XspI	CTAG	3 cut(s)	630, 873, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.