Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Reverse (-)

11628295 .. 11632827

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13320.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGAAAGCAGCATTTCCGCCTGGTTTTCGGTTTTCTCCGACTGATGTTGAGCTTGTCAAATACTATCTGAAGAGAAAAGTAATGGGGAAAAGAGTTCGTGTTCAAGTCATTGCCGACGTTGACATTTACAAGTATGCTCCTTGGGATCTTCCAGACAAATCTTGTTGGCGATATGGAGATCTGAAATGGTACTTCTTCTGTCCTAGAGAAATGAAATATGCAACTGGGGCTAGAGTCAATCGTGCCACTGGAGCTGGGTTCTGGAAAATGTCAGGAAAGGACAGATCTGTTAATTACAATGGTCAAGTGGTCGGTTGGATCAAGACTTTAGTTTTTCATATAGGTCGACCTCCACGAGGAGAACGGACAGACTGGGTTCTGCATGAGTACAGGCTTGAAGATAAGGACCTTGCTGATATGGGCATGCCTCAGGAATCATATGTTTTATGTGTAATTTTCCAAAAGGAAGGAGCAGGGCCAAAACTTAGTGCACAATATGGTGCACCCTTTAAAGAGGAAGATTGGACTGATGATGAGGTTGAAATCTGTTTGGACACAGTCCCGCATGCAAATAGGCCTGAGCTAGACCTTGTTCTGCCTAGGGGATATAATAGTCCTGGTCCTTATAGCACAGATTCCCCTGAGGGTATGTGCATAGGCCCTTCATCGGAATCCTGCATATCAGATGCTGTACCACATTCTTGCAATGTTCTCCACTCAGTTTCCAGTAATTCTGCTACAACAGAGAAGCTCTGTGTTTCGGCCAATGGTGATATTCTGTCCATGTTAGATTGCTTCGCAGAAGAAAGCATTTTCCCTATCAATGGCAATGACAAAAATAAGGAGCTTGATAACCTTATTCGTTCTGGAAATACAAGTACTACACAGAAGCTTGATATTCTGAATTCTAGAAATGTAGATGCTACTGAAGAACTTGATAATATTCTTCATTCTGGAAATGCGAACGCTACAGCTGATTTTCATAGAAGTGATATTTACAGAGATTTAGCAGACTTGGGGAACTTGGGTAGAGTTGAAGTTGGATTTAATTTATCCAATGAGCATGATTCTCTGTATACAATGGATGAGATTTTCGAGCTAGGTGATCTCGACAGACCGTTGAACAGCGATACTTCGATGTATAATTTACCGTCTCTTCACACAGAGCTGGAAGAGATGCCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

397

Amino Acids

44.51

Weight (kDa)

4.88

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	2.8e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	349, 1079
AciI	CCGC	2 cut(s)	20, 566
AclWI	GGATC	2 cut(s)	156, 329
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	907
AcuI	CTGAAG	2 cut(s)	92, 951
AfaI	GTAC	4 cut(s)	194, 392, 696, 883
AfiI	CCNNNNNNNGG	3 cut(s)	359, 670, 827
AgsI	TTSAA	5 cut(s)	107, 401, 545, 1040, 1126
AjnI	CCWGG	2 cut(s)	22, 619
AluBI	AGCT	9 cut(s)	55, 257, 586, 754, 850, 895, 977, 1102, 1171
AluI	AGCT	9 cut(s)	55, 257, 586, 754, 850, 895, 977, 1102, 1171
Alw21I	GWGCWC	2 cut(s)	496, 508
Alw26I	GTCTC	1 cut(s)	1161
Alw44I	GTGCAC	2 cut(s)	492, 504
AlwI	GGATC	2 cut(s)	156, 329
AlwNI	CAGNNNCTG	1 cut(s)	692
AoxI	GGCC	4 cut(s)	479, 578, 661, 765
ApaLI	GTGCAC	2 cut(s)	492, 504
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	907
AspA2I	CCTAGG	1 cut(s)	602
AspS9I	GGNCC	4 cut(s)	409, 479, 623, 662
AsuHPI	GGTGA	2 cut(s)	785, 1118
AvaII	GGWCC	2 cut(s)	409, 623
AvrII	CCTAGG	1 cut(s)	602
AxyI	CCTNAGG	2 cut(s)	432, 645
BaeGI	GKGCMC	2 cut(s)	496, 508
BauI	CACGAG	1 cut(s)	357
Bbv12I	GWGCWC	2 cut(s)	496, 508
BbvI	GCAGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	24, 621
BcoDI	GTCTC	1 cut(s)	1161
BfaI	CTAG	6 cut(s)	207, 234, 587, 603, 912, 1103
BfmI	CTRYAG	1 cut(s)	972
BglII	AGATCT	2 cut(s)	181, 287
BisI	GCNGC	1 cut(s)	12
BlnI	CCTAGG	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	13
BmcAI	AGTACT	1 cut(s)	883
Bme1390I	CCNGG	2 cut(s)	24, 621
Bme18I	GGWCC	2 cut(s)	409, 623
BmgT120I	GGNCC	4 cut(s)	409, 479, 623, 662
BmrFI	CCNGG	2 cut(s)	24, 621
BmrI	ACTGGG	2 cut(s)	237, 385
BmsI	GCATC	3 cut(s)	679, 913, 1170
BmuI	ACTGGG	2 cut(s)	237, 385
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	143, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 670, 827
Bse1I	ACTGG	4 cut(s)	232, 256, 380, 729
Bse21I	CCTNAGG	2 cut(s)	432, 645
Bse3DI	GCAATG	3 cut(s)	111, 715, 838
BseBI	CCWGG	2 cut(s)	24, 621
BseDI	CCNNGG	2 cut(s)	143, 602
BseGI	GGATG	1 cut(s)	1093
BseLI	CCNNNNNNNGG	3 cut(s)	359, 670, 827
BseMI	GCAATG	3 cut(s)	111, 715, 838
BseMII	CTCAG	4 cut(s)	446, 573, 636, 735
BseNI	ACTGG	4 cut(s)	232, 256, 380, 729
BseRI	GAGGAG	1 cut(s)	375
BseSI	GKGCMC	2 cut(s)	496, 508
BseXI	GCAGC	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	4 cut(s)	481, 580, 663, 767
BsiHKAI	GWGCWC	2 cut(s)	496, 508
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	3 cut(s)	359, 670, 827
BsmAI	GTCTC	1 cut(s)	1161
BsmBI	CGTCTC	1 cut(s)	1161
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	4 cut(s)	481, 580, 663, 767
Bsp1286I	GDGCHC	2 cut(s)	496, 508
Bsp143I	GATC	5 cut(s)	148, 181, 287, 321, 1108
BspACI	CCGC	2 cut(s)	20, 566
BspANI	GGCC	4 cut(s)	481, 580, 663, 767
BspCNI	CTCAG	4 cut(s)	445, 574, 637, 734
BspPI	GGATC	2 cut(s)	156, 329
BsrDI	GCAATG	3 cut(s)	111, 715, 838
BsrI	ACTGG	4 cut(s)	232, 256, 380, 729
BssECI	CCNNGG	2 cut(s)	143, 602
BssMI	GATC	5 cut(s)	148, 181, 287, 321, 1108
BssNAI	GTATAC	1 cut(s)	1080
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	143, 602
Bst1107I	GTATAC	1 cut(s)	1080
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	24, 621
Bst4CI	ACNGT	3 cut(s)	562, 1122, 1155
Bst6I	CTCTTC	3 cut(s)	68, 1164, 1170
BstC8I	GCNNGC	2 cut(s)	428, 570
BstDEI	CTNAG	5 cut(s)	432, 488, 582, 645, 721
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	1093
BstKTI	GATC	5 cut(s)	151, 184, 290, 324, 1111
BstMAI	GTCTC	1 cut(s)	1161
BstMBI	GATC	5 cut(s)	148, 181, 287, 321, 1108
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 254
BstNI	CCWGG	2 cut(s)	24, 621
BstNSI	RCATGY	2 cut(s)	430, 572
BstSCI	CCNGG	2 cut(s)	22, 619
BstSFI	CTRYAG	1 cut(s)	972
BstSLI	GKGCMC	2 cut(s)	496, 508
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	3 cut(s)	148, 181, 287
BstYI	RGATCY	3 cut(s)	148, 181, 287
BstZ17I	GTATAC	1 cut(s)	1080
Bsu36I	CCTNAGG	2 cut(s)	432, 645
BsuRI	GGCC	4 cut(s)	481, 580, 663, 767
BtsCI	GGATG	1 cut(s)	1093
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	428, 570
CaiI	CAGNNNCTG	1 cut(s)	692
Cfr13I	GGNCC	4 cut(s)	409, 479, 623, 662
Csp6I	GTAC	4 cut(s)	193, 391, 695, 882
CviAII	CATG	5 cut(s)	386, 427, 569, 787, 1067
CviQI	GTAC	4 cut(s)	193, 391, 695, 882
DdeI	CTNAG	5 cut(s)	432, 488, 582, 645, 721
DpnI	GATC	5 cut(s)	150, 183, 289, 323, 1110
DpnII	GATC	5 cut(s)	148, 181, 287, 321, 1108
DraI	TTTAAA	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	3 cut(s)	68, 1164, 1170
EarI	CTCTTC	3 cut(s)	68, 1164, 1170
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	143, 602
Eco147I	AGGCCT	1 cut(s)	580
Eco47I	GGWCC	2 cut(s)	409, 623
Eco57I	CTGAAG	2 cut(s)	92, 951
Eco81I	CCTNAGG	2 cut(s)	432, 645
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	2 cut(s)	409, 662
EcoRI	GAATTC	1 cut(s)	907
EcoRII	CCWGG	2 cut(s)	22, 619
EcoT14I	CCWWGG	2 cut(s)	143, 602
ErhI	CCWWGG	2 cut(s)	143, 602
Esp3I	CGTCTC	1 cut(s)	1161
FaeI	CATG	5 cut(s)	389, 430, 572, 790, 1070
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	5 cut(s)	385, 426, 568, 786, 1066
FauI	CCCGC	1 cut(s)	573
FauNDI	CATATG	1 cut(s)	442
FblI	GTMKAC	2 cut(s)	349, 1079
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	1100
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	6 cut(s)	207, 234, 587, 603, 912, 1103
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	481, 580, 663, 767
Hin1II	CATG	5 cut(s)	389, 430, 572, 790, 1070
HincII	GTYRAC	2 cut(s)	124, 350
HindII	GTYRAC	2 cut(s)	124, 350
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	5 cut(s)	237, 437, 638, 674, 1070
HphI	GGTGA	2 cut(s)	785, 1118
Hpy166II	GTNNAC	5 cut(s)	124, 350, 494, 506, 1080
Hpy188I	TCNGA	6 cut(s)	42, 72, 186, 673, 688, 906
Hpy188III	TCNNGA	9 cut(s)	155, 265, 276, 325, 434, 870, 912, 957, 1112
Hpy8I	GTNNAC	5 cut(s)	124, 350, 494, 506, 1080
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	464, 675
HpyCH4III	ACNGT	3 cut(s)	562, 1122, 1155
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	8 cut(s)	224, 385, 494, 506, 572, 657, 681, 708
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 254
HpyF3I	CTNAG	5 cut(s)	432, 488, 582, 645, 721
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	5 cut(s)	389, 430, 572, 790, 1070
Kzo9I	GATC	5 cut(s)	148, 181, 287, 321, 1108
LmnI	GCTCC	4 cut(s)	145, 254, 473, 847
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	3 cut(s)	679, 913, 1170
MaeI	CTAG	6 cut(s)	207, 234, 587, 603, 912, 1103
MaeII	ACGT	1 cut(s)	120
MalI	GATC	5 cut(s)	150, 183, 289, 323, 1110
MboI	GATC	5 cut(s)	148, 181, 287, 321, 1108
MflI	RGATCY	3 cut(s)	148, 181, 287
MhlI	GDGCHC	2 cut(s)	496, 508
MluCI	AATT	6 cut(s)	295, 456, 733, 907, 1051, 1147
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	3 cut(s)	65, 299, 1024
MnlI	CCTC	6 cut(s)	353, 363, 441, 511, 532, 640
MseI	TTAA	4 cut(s)	294, 513, 1050, 1189
MslI	CAYNNNNRTG	1 cut(s)	990
MspA1I	CMGCKG	1 cut(s)	977
MspR9I	CCNGG	2 cut(s)	24, 621
MvaI	CCWGG	2 cut(s)	24, 621
MwoI	GCNNNNNNNGC	2 cut(s)	230, 254
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	5 cut(s)	148, 181, 287, 321, 1108
NlaIII	CATG	5 cut(s)	389, 430, 572, 790, 1070
NspI	RCATGY	2 cut(s)	430, 572
PaeI	GCATGC	2 cut(s)	430, 572
PceI	AGGCCT	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	4 cut(s)	437, 638, 674, 1070
PflFI	GACNNNGTC	1 cut(s)	560
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	409
Psp6I	CCWGG	2 cut(s)	22, 619
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	22, 619
PspPI	GGNCC	4 cut(s)	409, 479, 623, 662
PspPPI	RGGWCCY	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	3 cut(s)	148, 181, 287
PsyI	GACNNNGTC	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	4 cut(s)	194, 392, 696, 883
RsaNI	GTAC	4 cut(s)	193, 391, 695, 882
RseI	CAYNNNNRTG	1 cut(s)	990
SalI	GTCGAC	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	294, 513, 1050, 1189
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	148, 181, 287, 321, 1108
Sau96I	GGNCC	4 cut(s)	409, 479, 623, 662
ScaI	AGTACT	1 cut(s)	883
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	2 cut(s)	24, 621
SduI	GDGCHC	2 cut(s)	496, 508
SfaNI	GCATC	3 cut(s)	679, 913, 1170
SfcI	CTRYAG	1 cut(s)	972
SinI	GGWCC	2 cut(s)	409, 623
SmiMI	CAYNNNNRTG	1 cut(s)	990
SphI	GCATGC	2 cut(s)	430, 572
Sse9I	AATT	6 cut(s)	295, 456, 733, 907, 1051, 1147
SseBI	AGGCCT	1 cut(s)	580
SsiI	CCGC	2 cut(s)	20, 566
SspI	AATATT	1 cut(s)	946
SspMI	CTAG	6 cut(s)	207, 234, 587, 603, 912, 1103
StuI	AGGCCT	1 cut(s)	580
StyD4I	CCNGG	2 cut(s)	22, 619
StyI	CCWWGG	2 cut(s)	143, 602
TaaI	ACNGT	3 cut(s)	562, 1122, 1155
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	4 cut(s)	349, 1098, 1113, 1139
TasI	AATT	6 cut(s)	295, 456, 733, 907, 1051, 1147
TatI	WGTACW	2 cut(s)	390, 881
TfiI	GAWTC	4 cut(s)	437, 638, 674, 1070
Tru1I	TTAA	4 cut(s)	294, 513, 1050, 1189
Tru9I	TTAA	4 cut(s)	294, 513, 1050, 1189
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	5 cut(s)	230, 329, 657, 941, 974
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	560
VneI	GTGCAC	2 cut(s)	492, 504
VpaK11BI	GGWCC	2 cut(s)	409, 623
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	907
XbaI	TCTAGA	1 cut(s)	911
XceI	RCATGY	2 cut(s)	430, 572
XmaJI	CCTAGG	1 cut(s)	602
XmiI	GTMKAC	2 cut(s)	349, 1079
XspI	CTAG	6 cut(s)	207, 234, 587, 603, 912, 1103
ZrmI	AGTACT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.