Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

2091532 .. 2093482

Gene Structure 1951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGGGAAAGGGAAATCGTCGTTGTCTCCTGGTTTTCGGTTTTCTCCAACTGATGTAGAGCTTGTACAATATTATTTGAAGAGGAAAGTAATGGGGAAAAGACTCCCTTATAACTTTGTTGCAGAGGTCGACATTCATAAGTATGCTCCTTGGGATCTTCCAGAAAAATCTAGCTGGCAAAATGGAGATTTAAAATGGTACTTCTTTTGTCCGACAGAAAGGAAGTATCCAACTGGGGCTAGAGCGAAACGTACAACTGAATGTGGGTACTGGAAGGCCACAGGAAATGACCGATCTGTTCTTTACAATGGTGAAGGTGCAGGAAAGATAAAAACATTGATTTTTCATACAGGTCGAGCTCCAAAAGGAGAGCGAACAGACTGGGTTATGCATGAGTATAGGCTTGAATCTAAGGACCTAGCTAATCGTGGTGTGCCTCAGGAATCGTATGTGCTCTGTACAATTTTTCAAAAAGAAGGGCCAGGGCCAAAAAATGGTGCACAATATGGTGCGCCCCTTATGGAGGAAGACTGGAGTGATGATGAGGCTGAAAATTGTTCAGAAGCAGTCCCACATGCAAATATGCCTGAACCAAACCTTGTGCTGCCGAGTAACTACAATGGTTCCATCACTACTAGCACGTATTCCCATGAAAGTATACACATACGTCCTTCATCTGAATCGTGCATATCAGATGCTGTACCACTTTCTTGCCATGTTCCCCAACTGGTTTCCAGTAATCATGCTACAGTTGAGGAGCCTCATACTTCCAATGATGATGATATCCTGTCAATATTGGCTTGCTTCTCGGAAGAAAGCCCTTCCTTAATCAAAGAAAACGAAAAAAATGAGGAGCTTGGTAATGTTGTTCCTATCGGAAATGCTAGTGCTACACCTCACGTCGTTAGTGATGATATTTACGTCACTTTAGTAGATTTGGGCAAGGTGGCTAGAGTAGGTGAAGATGGATGTAGTTTCTCCAGTTTGCCTAATTCTGTCTGTGCTACGGGTCAAATGCCGCTAGGTGACGATGGGCAATATTTGGAGCTGGATGATCTTGGCGAACAATTTAATTACCATGATTCTACGCACACTCGGCCTCCTCCTATGTTCGGTGAGCCTCAAACTTTGCTGGAAGAGATGCCTTTTCAGGATGAGACCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

389

Amino Acids

43.1

Weight (kDa)

4.86

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 135	1.4e-42	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccI	GTMKAC	2 cut(s)	129, 658
AciI	CCGC	1 cut(s)	1019
AclWI	GGATC	1 cut(s)	162
AfaI	GTAC	6 cut(s)	66, 200, 253, 269, 460, 702
AfiI	CCNNNNNNNGG	3 cut(s)	494, 523, 1112
AgsI	TTSAA	3 cut(s)	79, 407, 470
AjiI	CACGTC	1 cut(s)	901
AjnI	CCWGG	2 cut(s)	28, 481
AluBI	AGCT	6 cut(s)	61, 174, 359, 422, 856, 1048
AluI	AGCT	6 cut(s)	61, 174, 359, 422, 856, 1048
Alw21I	GWGCWC	3 cut(s)	361, 456, 502
Alw26I	GTCTC	2 cut(s)	30, 1151
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	162
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	4 cut(s)	276, 479, 485, 1097
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	415, 479, 485
AsuHPI	GGTGA	4 cut(s)	323, 971, 1037, 1127
AvaII	GGWCC	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	3 cut(s)	361, 456, 502
BbvI	GCAGC	1 cut(s)	591
BccI	CCATC	3 cut(s)	635, 959, 1025
BciT130I	CCWGG	2 cut(s)	30, 483
BciVI	GTATCC	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	30, 1151
BfaI	CTAG	7 cut(s)	171, 240, 419, 636, 885, 951, 1022
BfmI	CTRYAG	1 cut(s)	747
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	605, 1019
BlsI	GCNGC	2 cut(s)	606, 1020
Bme1390I	CCNGG	2 cut(s)	30, 483
Bme18I	GGWCC	1 cut(s)	415
BmgBI	CACGTC	1 cut(s)	901
BmgT120I	GGNCC	3 cut(s)	415, 479, 485
BmiI	GGNNCC	2 cut(s)	625, 759
BmrFI	CCNGG	2 cut(s)	30, 483
BmrI	ACTGGG	2 cut(s)	243, 391
BmsI	GCATC	2 cut(s)	685, 1131
BmuI	ACTGGG	2 cut(s)	243, 391
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	2 cut(s)	553, 964
BsaAI	YACGTR	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	1151
BsaJI	CCNNGG	2 cut(s)	149, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	1084, 1114
Bsc4I	CCNNNNNNNGG	3 cut(s)	494, 523, 1112
Bse1I	ACTGG	8 cut(s)	238, 275, 386, 536, 732, 735, 981, 1161
Bse21I	CCTNAGG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	30, 483
BseDI	CCNNGG	2 cut(s)	149, 482
BseGI	GGATG	3 cut(s)	974, 1057, 1159
BseLI	CCNNNNNNNGG	3 cut(s)	494, 523, 1112
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	8 cut(s)	238, 275, 386, 536, 732, 735, 981, 1161
BseRI	GAGGAG	3 cut(s)	770, 866, 1092
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	591
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	4 cut(s)	278, 481, 487, 1099
BsiHKAI	GWGCWC	3 cut(s)	361, 456, 502
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	3 cut(s)	494, 523, 1112
BsmAI	GTCTC	2 cut(s)	30, 1151
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	4 cut(s)	278, 481, 487, 1099
Bso31I	GGTCTC	1 cut(s)	1151
Bsp1286I	GDGCHC	3 cut(s)	361, 456, 502
Bsp1407I	TGTACA	2 cut(s)	64, 458
Bsp143I	GATC	3 cut(s)	154, 293, 1054
BspACI	CCGC	1 cut(s)	1019
BspANI	GGCC	4 cut(s)	278, 481, 487, 1099
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	625, 759
BspPI	GGATC	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	1151
BsrGI	TGTACA	2 cut(s)	64, 458
BsrI	ACTGG	8 cut(s)	238, 275, 386, 536, 732, 735, 981, 1161
BssECI	CCNNGG	2 cut(s)	149, 482
BssMI	GATC	3 cut(s)	154, 293, 1054
BssNAI	GTATAC	1 cut(s)	659
BssT1I	CCWWGG	1 cut(s)	149
Bst1107I	GTATAC	1 cut(s)	659
Bst2UI	CCWGG	2 cut(s)	30, 483
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	2 cut(s)	74, 1131
BstAUI	TGTACA	2 cut(s)	64, 458
BstBAI	YACGTR	1 cut(s)	642
BstC8I	GCNNGC	2 cut(s)	176, 802
BstDEI	CTNAG	2 cut(s)	411, 438
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	3 cut(s)	974, 1057, 1159
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	3 cut(s)	157, 296, 1057
BstMAI	GTCTC	2 cut(s)	30, 1151
BstMBI	GATC	3 cut(s)	154, 293, 1054
BstMWI	GCNNNNNNNGC	1 cut(s)	1096
BstNI	CCWGG	2 cut(s)	30, 483
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	28, 481
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	591
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BstZ17I	GTATAC	1 cut(s)	659
Bsu36I	CCTNAGG	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	278, 481, 487, 1099
BtrI	CACGTC	1 cut(s)	901
BtsCI	GGATG	3 cut(s)	974, 1057, 1159
Cac8I	GCNNGC	2 cut(s)	176, 802
CaiI	CAGNNNCTG	1 cut(s)	698
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	415, 479, 485
Csp6I	GTAC	6 cut(s)	65, 199, 252, 268, 459, 701
CviAII	CATG	6 cut(s)	392, 575, 650, 716, 743, 1079
CviQI	GTAC	6 cut(s)	65, 199, 252, 268, 459, 701
DdeI	CTNAG	2 cut(s)	411, 438
DpnI	GATC	3 cut(s)	156, 295, 1056
DpnII	GATC	3 cut(s)	154, 293, 1054
DraI	TTTAAA	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	74, 1131
EarI	CTCTTC	2 cut(s)	74, 1131
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	1151
Eco32I	GATATC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	28, 481
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	6 cut(s)	395, 578, 653, 719, 746, 1082
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	6 cut(s)	391, 574, 649, 715, 742, 1078
FblI	GTMKAC	2 cut(s)	129, 658
Fnu4HI	GCNGC	2 cut(s)	605, 1019
FokI	GGATG	2 cut(s)	981, 1064
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	2 cut(s)	605, 1019
FspBI	CTAG	7 cut(s)	171, 240, 419, 636, 885, 951, 1022
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	2 cut(s)	605, 1019
GsuI	CTGGAG	2 cut(s)	553, 964
HaeIII	GGCC	4 cut(s)	278, 481, 487, 1099
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	6 cut(s)	395, 578, 653, 719, 746, 1082
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	102, 407, 443, 680, 1082
HphI	GGTGA	4 cut(s)	323, 971, 1037, 1127
Hpy166II	GTNNAC	3 cut(s)	130, 500, 659
Hpy188I	TCNGA	6 cut(s)	213, 562, 679, 694, 811, 878
Hpy188III	TCNNGA	3 cut(s)	161, 440, 1151
Hpy8I	GTNNAC	3 cut(s)	130, 500, 659
Hpy99I	CGWCG	2 cut(s)	22, 905
HpyAV	CCTTC	5 cut(s)	268, 308, 470, 681, 831
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	5 cut(s)	250, 641, 667, 900, 921
HpyCH4V	TGCA	6 cut(s)	122, 320, 391, 500, 578, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1096
HpyF3I	CTNAG	2 cut(s)	411, 438
HpySE526I	ACGT	5 cut(s)	250, 641, 667, 900, 921
Hsp92II	CATG	6 cut(s)	395, 578, 653, 719, 746, 1082
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	154, 293, 1054
LmnI	GCTCC	5 cut(s)	151, 364, 757, 853, 1045
Lsp1109I	GCAGC	1 cut(s)	591
LweI	GCATC	2 cut(s)	685, 1131
MaeI	CTAG	7 cut(s)	171, 240, 419, 636, 885, 951, 1022
MaeII	ACGT	5 cut(s)	250, 641, 667, 900, 921
MaeIII	GTNAC	3 cut(s)	611, 922, 1025
MalI	GATC	3 cut(s)	156, 295, 1056
MboI	GATC	3 cut(s)	154, 293, 1054
MboII	GAAGA	6 cut(s)	91, 149, 539, 824, 974, 1148
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	3 cut(s)	361, 456, 502
MluCI	AATT	5 cut(s)	462, 553, 991, 1067, 1072
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	3 cut(s)	71, 236, 254
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	3 cut(s)	191, 827, 1071
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	30, 483
MvaI	CCWGG	2 cut(s)	30, 483
MwoI	GCNNNNNNNGC	1 cut(s)	1096
NdeII	GATC	3 cut(s)	154, 293, 1054
NlaIII	CATG	6 cut(s)	395, 578, 653, 719, 746, 1082
NlaIV	GGNNCC	2 cut(s)	625, 759
NmeAIII	GCCGAG	2 cut(s)	633, 1075
NmuCI	GTSAC	2 cut(s)	922, 1025
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	578
PfeI	GAWTC	4 cut(s)	407, 443, 680, 1082
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	2 cut(s)	606, 1020
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	642
PpuMI	RGGWCCY	1 cut(s)	415
PsiI	TTATAA	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	2 cut(s)	28, 481
PspGI	CCWGG	2 cut(s)	28, 481
PspN4I	GGNNCC	2 cut(s)	625, 759
PspPI	GGNCC	3 cut(s)	415, 479, 485
PspPPI	RGGWCCY	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	6 cut(s)	66, 200, 253, 269, 460, 702
RsaNI	GTAC	6 cut(s)	65, 199, 252, 268, 459, 701
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	361
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	191, 827, 1071
SatI	GCNGC	2 cut(s)	605, 1019
Sau3AI	GATC	3 cut(s)	154, 293, 1054
Sau96I	GGNCC	3 cut(s)	415, 479, 485
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	30, 483
SduI	GDGCHC	3 cut(s)	361, 456, 502
SfaNI	GCATC	2 cut(s)	685, 1131
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	5 cut(s)	462, 553, 991, 1067, 1072
SsiI	CCGC	1 cut(s)	1019
SspI	AATATT	3 cut(s)	71, 795, 1040
SspMI	CTAG	7 cut(s)	171, 240, 419, 636, 885, 951, 1022
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	28, 481
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	5 cut(s)	253, 644, 670, 903, 924
TaqI	TCGA	2 cut(s)	129, 355
TaqII	GACCGA	1 cut(s)	306
TasI	AATT	5 cut(s)	462, 553, 991, 1067, 1072
TatI	WGTACW	2 cut(s)	64, 458
TauI	GCSGC	1 cut(s)	1021
TfiI	GAWTC	4 cut(s)	407, 443, 680, 1082
Tru1I	TTAA	3 cut(s)	191, 827, 1071
Tru9I	TTAA	3 cut(s)	191, 827, 1071
TseFI	GTSAC	2 cut(s)	922, 1025
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	2 cut(s)	922, 1025
TspDTI	ATGAA	4 cut(s)	125, 335, 663, 666
Van91I	CCANNNNNTGG	1 cut(s)	494
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	521
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	2 cut(s)	129, 658
XspI	CTAG	7 cut(s)	171, 240, 419, 636, 885, 951, 1022
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.