Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

2427711 .. 2429894

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02120.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGAAAGGGAAATCATTGTTGCCTCCTGGTTTTCGGTTTTCTCCAACTGATGTAGAGCTTGTACAATATTATTTGAAGAGGAAAGTTATGGGGAAAAGACTCCGTTATAACTTCGTTGCAGAGGTCGACATTCATAAGTATGCTCCTTGGGATCTTCCAGGCAAATCTAGTTGGCAAAGTGGAGATTTAAAATGGTACTTCTTTTGTCCGACAGAAAGGAAGTACCCAACTGGGGTTAGAACAAAACGTACTACTGAATGTGGTTACTGGAAAGCCACAGGAAATGACAGATCTGTTCTTTACAATGGTGAAGTTGCGGGCAAGATAAAAACATTGGTTTTTCATACAGGTCGAGCTCCAAAAGGAGACCGAACAGACTGGGTTATGCATGAGTATAGGCTTGAATCTAAGGACCTAGCTAATCGGGGTGTGCCTCAGGAATCGTATGTGCTCTGTACCATTTTTCAAAAAGAAGGGCCAGGGCCGAGAAATGGTGCACAATATGGTGCGCCCCTTATGGAGGAAGACTGGAGTGATGATGAGGCTGAAAATTGTTCAGAAGCAGTCCCACATGCAAATATGCCTGTACCAAACCTTGTTCTGCCGAGTGACTACAATAGTTCCATCACTACTAGCACGTACACCCATGATGGTATACGCATAGGTCCTTCATCTGAATCGTGTATATCATATGTTGTACCACTTTCTTGCAATGTTTCCCAACTGGTTTCCAGTAATCATGCTACAGTGGAGGAGCCTCATACTTCTGAGGATGATATCCTGTCAATGTTGGCTTGCTTCTCAGAAGAAAGCCCTTCATTACTTGAAGAAAACGAAAAAAATGAGGAGCTTGGTAATGTCATTCCTATTGGAAATGCTAGTGCAACGCCTCATCTCGTTATTAATGATACGTATGACAATTTAGGAGATTTGGGCAAGGCAGCAAGAGTCGGTGAAGAAGGATGTAGTTTCTCCAGTTTGCCAAATTCTGTCTGTGCTCCGGGTCAAATCCCACTAGGTGACGATGAGCAATATTTGGAGCTGGATGATCTTGGCGAACCATTGAATTACCGTGATTCTACATACACTCAGCCTCCTTCTATGTTCGGTCAGCCTCATGCTTCGCTGGGAGAGACATCTTTTCAGGGTGAAGACCAGTTCAACGTGTTTGATAACGTGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

397

Amino Acids

43.98

Weight (kDa)

4.77

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccI	GTMKAC	2 cut(s)	129, 658
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	988
AdeI	CACNNNGTG	1 cut(s)	1022
AfaI	GTAC	8 cut(s)	66, 200, 227, 253, 460, 591, 644, 702
AfiI	CCNNNNNNNGG	3 cut(s)	235, 494, 523
AflIII	ACRYGT	1 cut(s)	1167
AgsI	TTSAA	6 cut(s)	79, 407, 470, 830, 1069, 1165
AjnI	CCWGG	3 cut(s)	28, 160, 481
AluBI	AGCT	5 cut(s)	61, 359, 422, 853, 1045
AluI	AGCT	5 cut(s)	61, 359, 422, 853, 1045
Alw21I	GWGCWC	4 cut(s)	361, 456, 502, 1003
Alw26I	GTCTC	2 cut(s)	363, 1130
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	162
AoxI	GGCC	2 cut(s)	479, 485
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	944
ApoI	RAATTY	1 cut(s)	988
AseI	ATTAAT	1 cut(s)	906
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	4 cut(s)	415, 479, 485, 668
AsuC2I	CCSGG	1 cut(s)	1005
AsuHPI	GGTGA	4 cut(s)	323, 968, 1034, 1163
AvaII	GGWCC	2 cut(s)	415, 668
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	2 cut(s)	534, 1161
Bbv12I	GWGCWC	4 cut(s)	361, 456, 502, 1003
BbvI	GCAGC	1 cut(s)	956
BccI	CCATC	2 cut(s)	635, 647
BciT130I	CCWGG	3 cut(s)	30, 162, 483
BcnI	CCSGG	1 cut(s)	1005
BcoDI	GTCTC	2 cut(s)	363, 1130
BfaI	CTAG	5 cut(s)	171, 419, 636, 882, 1019
BfmI	CTRYAG	1 cut(s)	747
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	1 cut(s)	945
BlsI	GCNGC	1 cut(s)	946
Bme1390I	CCNGG	4 cut(s)	30, 162, 483, 1005
Bme18I	GGWCC	2 cut(s)	415, 668
BmgT120I	GGNCC	4 cut(s)	415, 479, 485, 668
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	4 cut(s)	30, 162, 483, 1005
BmrI	ACTGGG	2 cut(s)	243, 391
BmuI	ACTGGG	2 cut(s)	243, 391
BpiI	GAAGAC	2 cut(s)	534, 1161
BpmI	CTGGAG	2 cut(s)	553, 961
BpuMI	CCSGG	1 cut(s)	1005
BsaAI	YACGTR	2 cut(s)	642, 915
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	149, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	1081, 1111
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 494, 523
Bse1I	ACTGG	8 cut(s)	238, 275, 386, 536, 732, 735, 978, 1159
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	721
BseBI	CCWGG	3 cut(s)	30, 162, 483
BseDI	CCNNGG	2 cut(s)	149, 482
BseGI	GGATG	3 cut(s)	781, 971, 1054
BseLI	CCNNNNNNNGG	3 cut(s)	235, 494, 523
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	4 cut(s)	452, 762, 819, 1106
BseNI	ACTGG	8 cut(s)	238, 275, 386, 536, 732, 735, 978, 1159
BseRI	GAGGAG	2 cut(s)	770, 863
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	956
BseYI	CCCAGC	1 cut(s)	1129
BshFI	GGCC	2 cut(s)	481, 487
BsiHKAI	GWGCWC	4 cut(s)	361, 456, 502, 1003
BsiSI	CCGG	1 cut(s)	1004
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	3 cut(s)	235, 494, 523
BsmAI	GTCTC	2 cut(s)	363, 1130
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	481, 487
Bso31I	GGTCTC	1 cut(s)	363
Bsp1286I	GDGCHC	4 cut(s)	361, 456, 502, 1003
Bsp1407I	TGTACA	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	154, 293, 1051
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	2 cut(s)	481, 487
BspCNI	CTCAG	4 cut(s)	451, 763, 818, 1105
BspLI	GGNNCC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	721
BsrGI	TGTACA	1 cut(s)	64
BsrI	ACTGG	8 cut(s)	238, 275, 386, 536, 732, 735, 978, 1159
BssECI	CCNNGG	2 cut(s)	149, 482
BssMI	GATC	3 cut(s)	154, 293, 1051
BssNAI	GTATAC	1 cut(s)	659
BssT1I	CCWWGG	1 cut(s)	149
Bst1107I	GTATAC	1 cut(s)	659
Bst2UI	CCWGG	3 cut(s)	30, 162, 483
Bst4CI	ACNGT	2 cut(s)	751, 1076
Bst6I	CTCTTC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	64
BstBAI	YACGTR	2 cut(s)	642, 915
BstC8I	GCNNGC	2 cut(s)	322, 799
BstDEI	CTNAG	5 cut(s)	411, 438, 771, 805, 1092
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	3 cut(s)	781, 971, 1054
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	3 cut(s)	157, 296, 1054
BstMAI	GTCTC	2 cut(s)	363, 1130
BstMBI	GATC	3 cut(s)	154, 293, 1051
BstNI	CCWGG	3 cut(s)	30, 162, 483
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	28, 160, 481, 1003
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	502
BstSNI	TACGTA	1 cut(s)	915
BstV1I	GCAGC	1 cut(s)	956
BstV2I	GAAGAC	2 cut(s)	534, 1161
BstX2I	RGATCY	2 cut(s)	154, 293
BstYI	RGATCY	2 cut(s)	154, 293
BstZ17I	GTATAC	1 cut(s)	659
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	481, 487
BtsCI	GGATG	3 cut(s)	781, 971, 1054
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	2 cut(s)	322, 799
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	4 cut(s)	415, 479, 485, 668
Csp6I	GTAC	8 cut(s)	65, 199, 226, 252, 459, 590, 643, 701
CviAII	CATG	5 cut(s)	392, 575, 650, 743, 1121
CviQI	GTAC	8 cut(s)	65, 199, 226, 252, 459, 590, 643, 701
DdeI	CTNAG	5 cut(s)	411, 438, 771, 805, 1092
DpnI	GATC	3 cut(s)	156, 295, 1053
DpnII	GATC	3 cut(s)	154, 293, 1051
DraI	TTTAAA	1 cut(s)	192
DraIII	CACNNNGTG	1 cut(s)	1022
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	359
Eco105I	TACGTA	1 cut(s)	915
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	781
Eco47I	GGWCC	2 cut(s)	415, 668
Eco53kI	GAGCTC	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO109I	RGGNCCY	2 cut(s)	415, 668
EcoRII	CCWGG	3 cut(s)	28, 160, 481
EcoRV	GATATC	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	5 cut(s)	395, 578, 653, 746, 1124
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	5 cut(s)	391, 574, 649, 742, 1120
FauI	CCCGC	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	694
FblI	GTMKAC	2 cut(s)	129, 658
Fnu4HI	GCNGC	1 cut(s)	945
FokI	GGATG	3 cut(s)	788, 978, 1061
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	945
FspBI	CTAG	5 cut(s)	171, 419, 636, 882, 1019
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	1 cut(s)	945
GsaI	CCCAGC	1 cut(s)	1133
GsuI	CTGGAG	2 cut(s)	553, 961
HaeIII	GGCC	2 cut(s)	481, 487
HapII	CCGG	1 cut(s)	1004
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	5 cut(s)	395, 578, 653, 746, 1124
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	6 cut(s)	102, 407, 443, 680, 951, 1079
HpaII	CCGG	1 cut(s)	1004
HphI	GGTGA	4 cut(s)	323, 968, 1034, 1163
Hpy166II	GTNNAC	5 cut(s)	130, 500, 645, 659, 1183
Hpy188I	TCNGA	6 cut(s)	213, 562, 679, 772, 808, 1190
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	5 cut(s)	130, 500, 645, 659, 1183
HpyAV	CCTTC	5 cut(s)	470, 681, 828, 956, 1110
HpyCH4III	ACNGT	2 cut(s)	751, 1076
HpyCH4IV	ACGT	5 cut(s)	250, 641, 914, 1167, 1179
HpyCH4V	TGCA	6 cut(s)	122, 391, 500, 578, 714, 887
HpyF3I	CTNAG	5 cut(s)	411, 438, 771, 805, 1092
HpySE526I	ACGT	5 cut(s)	250, 641, 914, 1167, 1179
Hsp92II	CATG	5 cut(s)	395, 578, 653, 746, 1124
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	154, 293, 1051
LmnI	GCTCC	6 cut(s)	151, 364, 757, 850, 1006, 1042
Lsp1109I	GCAGC	1 cut(s)	956
MaeI	CTAG	5 cut(s)	171, 419, 636, 882, 1019
MaeII	ACGT	5 cut(s)	250, 641, 914, 1167, 1179
MaeIII	GTNAC	3 cut(s)	266, 611, 1022
MalI	GATC	3 cut(s)	156, 295, 1053
MboI	GATC	3 cut(s)	154, 293, 1051
MboII	GAAGA	7 cut(s)	91, 149, 539, 821, 842, 971, 1166
MflI	RGATCY	2 cut(s)	154, 293
MhlI	GDGCHC	4 cut(s)	361, 456, 502, 1003
MluCI	AATT	4 cut(s)	553, 922, 988, 1069
MlyI	GAGTC	2 cut(s)	96, 960
MmeI	TCCRAC	2 cut(s)	71, 236
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	2 cut(s)	191, 906
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	1004
MspR9I	CCNGG	4 cut(s)	30, 162, 483, 1005
MvaI	CCWGG	3 cut(s)	30, 162, 483
NciI	CCSGG	1 cut(s)	1005
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	3 cut(s)	154, 293, 1051
NlaIII	CATG	5 cut(s)	395, 578, 653, 746, 1124
NlaIV	GGNNCC	1 cut(s)	759
NmeAIII	GCCGAG	2 cut(s)	513, 633
NmuCI	GTSAC	2 cut(s)	611, 1022
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	578
PfeI	GAWTC	4 cut(s)	407, 443, 680, 1079
PkrI	GCNGC	1 cut(s)	946
PleI	GAGTC	2 cut(s)	96, 959
PpsI	GAGTC	2 cut(s)	96, 959
Ppu21I	YACGTR	2 cut(s)	642, 915
PpuMI	RGGWCCY	2 cut(s)	415, 668
PshBI	ATTAAT	1 cut(s)	906
PsiI	TTATAA	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	361
Psp5II	RGGWCCY	2 cut(s)	415, 668
Psp6I	CCWGG	3 cut(s)	28, 160, 481
PspFI	CCCAGC	1 cut(s)	1129
PspGI	CCWGG	3 cut(s)	28, 160, 481
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	4 cut(s)	415, 479, 485, 668
PspPPI	RGGWCCY	2 cut(s)	415, 668
PsrI	GAACNNNNNNTAC	2 cut(s)	235, 267
PsuI	RGATCY	2 cut(s)	154, 293
RsaI	GTAC	8 cut(s)	66, 200, 227, 253, 460, 591, 644, 702
RsaNI	GTAC	8 cut(s)	65, 199, 226, 252, 459, 590, 643, 701
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	361
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	191, 906
SatI	GCNGC	1 cut(s)	945
Sau3AI	GATC	3 cut(s)	154, 293, 1051
Sau96I	GGNCC	4 cut(s)	415, 479, 485, 668
SchI	GAGTC	2 cut(s)	96, 960
ScrFI	CCNGG	4 cut(s)	30, 162, 483, 1005
SduI	GDGCHC	4 cut(s)	361, 456, 502, 1003
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	2 cut(s)	415, 668
SmiMI	CAYNNNNRTG	1 cut(s)	141
SnaBI	TACGTA	1 cut(s)	915
Sse9I	AATT	4 cut(s)	553, 922, 988, 1069
SsiI	CCGC	1 cut(s)	320
SspI	AATATT	2 cut(s)	71, 1037
SspMI	CTAG	5 cut(s)	171, 419, 636, 882, 1019
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	4 cut(s)	28, 160, 481, 1003
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	751, 1076
TaiI	ACGT	5 cut(s)	253, 644, 917, 1170, 1182
TaqI	TCGA	2 cut(s)	129, 355
TaqII	GACCGA	2 cut(s)	387, 1100
TasI	AATT	4 cut(s)	553, 922, 988, 1069
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	4 cut(s)	407, 443, 680, 1079
Tru1I	TTAA	2 cut(s)	191, 906
Tru9I	TTAA	2 cut(s)	191, 906
TscAI	CASTG	1 cut(s)	756
TseFI	GTSAC	2 cut(s)	611, 1022
TseI	GCWGC	1 cut(s)	944
Tsp45I	GTSAC	2 cut(s)	611, 1022
TspDTI	ATGAA	4 cut(s)	125, 335, 663, 810
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	756
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	415, 668
VspI	ATTAAT	1 cut(s)	906
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	1 cut(s)	988
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	2 cut(s)	129, 658
XspI	CTAG	5 cut(s)	171, 419, 636, 882, 1019
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.