Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Reverse (-)

35944278 .. 35949183

Gene Structure 4906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTTTCTCGTTCAGATCAAAAGACATTGGGTGCGCAATAAGGATCCTGTTTCAAATATTACCAAACACAACAAATCTTGTTGGCGATTTGGAGACCTAAAATGGTACTTCTTTTCTCCTATAGAAAAGAAATATGCAACTGGGGCTAGAGTGAATCGTGCCACTGAAGCTGGGTACTGGAAAATGTCAGGAAAGGATAGATCTGTTAATTACAATGGTGAACTGGTCGGCTGGATCAAGACTTTAGTTTTTTACACAGGTCGACCTTCACGAGGAGAACGGACAGATTGGGTTTTGCATGAGTATAGGCTTGAAGATAAGGGCGTGCCTCAGGAATCATATGTTTTATGTGTACTTTTCCAAAAGGAAGGGCAAGGGCCAAAAAATGGTGCACAATATGGTGCACCCTTTAAAGAGGAAGATTGGACTGATGATGAGGTTGAAATCTGTTTAGACACTGTCCCACATGCAAATAGGCCTGAGCCAGACCTTGTTCTGCCTAGGGGATATAATAGTTCCAGTCTTACTAGCACAGATTGCCCTGACGGTATGTGCATAGGCCCTTCATCTGAATCCTGCATATCAGATGTTGTACCACCTTCTTGCAATATTTTCCACTCAGTTCCCAGTAATTCTGTTACAACAGAGAAGCAGTCTGTTTCAGCCAATGCTGATATCCTGTCCATGTTAGATTGCTTTGTGGAAGAAAGCACTTTCCTTATCAATGGCAATGACAAAAATAAGGAGCTTGATAACCTGATTCATTCTGGAAATACAAGTACCACACAGAAGCTTGATATTCTGAATTCTAGAAATGCAAATGCTACAGAAGAGCGTGATAATATTCCTCATTCTGGAAATGCGAATGCTACAGATCATTTTAATAGAAGTGATATTTATAGAGATTTAGCAGACTTGGGCAACTTGGGTAGAGTTGAAGACGGGTATAATTTTTTGAGTATGCATGGTTCTCTGTATACCATGGACGAGATTTTCGAGCTAGTTGATCTTGACAAACCGTTGAACTGCGATACTTCCATGTATAATTTACCATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

353

Amino Acids

39.81

Weight (kDa)

5.06

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	29 - 104	1.9e-21	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccI	GTMKAC	2 cut(s)	262, 977
AclWI	GGATC	3 cut(s)	38, 51, 242
AcsI	RAATTY	1 cut(s)	805
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	5 cut(s)	107, 176, 354, 594, 781
AfiI	CCNNNNNNNGG	3 cut(s)	272, 386, 854
AgsI	TTSAA	5 cut(s)	54, 314, 443, 938, 1024
AluBI	AGCT	4 cut(s)	170, 748, 793, 1000
AluI	AGCT	4 cut(s)	170, 748, 793, 1000
Alw21I	GWGCWC	2 cut(s)	394, 406
Alw26I	GTCTC	1 cut(s)	87
Alw44I	GTGCAC	2 cut(s)	390, 402
AlwI	GGATC	3 cut(s)	38, 51, 242
AoxI	GGCC	3 cut(s)	377, 476, 559
ApaLI	GTGCAC	2 cut(s)	390, 402
ApoI	RAATTY	1 cut(s)	805
ArsI	GACNNNNNNTTYG	2 cut(s)	977, 1009
AspA2I	CCTAGG	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	377, 560
AsuHPI	GGTGA	1 cut(s)	230
AvrII	CCTAGG	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	330
BaeGI	GKGCMC	2 cut(s)	394, 406
BamHI	GGATCC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	945
Bbv12I	GWGCWC	2 cut(s)	394, 406
BccI	CCATC	1 cut(s)	1060
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	5 cut(s)	147, 501, 528, 810, 1001
BfmI	CTRYAG	3 cut(s)	120, 825, 870
BglII	AGATCT	1 cut(s)	200
BlnI	CCTAGG	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	377, 560
BmiI	GGNNCC	1 cut(s)	45
BmrI	ACTGGG	2 cut(s)	150, 621
BmuI	ACTGGG	2 cut(s)	150, 621
BpiI	GAAGAC	1 cut(s)	945
Bpu10I	CCTNAGC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	500, 981
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 386, 854
Bse1I	ACTGG	5 cut(s)	145, 182, 228, 519, 627
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	736
BseDI	CCNNGG	2 cut(s)	500, 981
BseLI	CCNNNNNNNGG	3 cut(s)	272, 386, 854
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	3 cut(s)	344, 471, 633
BseNI	ACTGG	5 cut(s)	145, 182, 228, 519, 627
BseRI	GAGGAG	1 cut(s)	288
BseSI	GKGCMC	2 cut(s)	394, 406
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	3 cut(s)	379, 478, 561
BsiHKAI	GWGCWC	2 cut(s)	394, 406
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	3 cut(s)	272, 386, 854
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	3 cut(s)	379, 478, 561
Bso31I	GGTCTC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	394, 406
Bsp143I	GATC	6 cut(s)	15, 43, 200, 234, 874, 1006
Bsp19I	CCATGG	1 cut(s)	981
BspANI	GGCC	3 cut(s)	379, 478, 561
BspCNI	CTCAG	3 cut(s)	343, 472, 632
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	3 cut(s)	38, 51, 242
BspQI	GCTCTTC	1 cut(s)	825
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	736
BsrI	ACTGG	5 cut(s)	145, 182, 228, 519, 627
BssECI	CCNNGG	2 cut(s)	500, 981
BssMI	GATC	6 cut(s)	15, 43, 200, 234, 874, 1006
BssNAI	GTATAC	1 cut(s)	978
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	500, 981
Bst1107I	GTATAC	1 cut(s)	978
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	460, 548, 1020
Bst6I	CTCTTC	1 cut(s)	825
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	330, 480, 619
BstDSI	CCRYGG	1 cut(s)	981
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	6 cut(s)	18, 46, 203, 237, 877, 1009
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	6 cut(s)	15, 43, 200, 234, 874, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 167, 537
BstNSI	RCATGY	1 cut(s)	470
BstSFI	CTRYAG	3 cut(s)	120, 825, 870
BstSLI	GKGCMC	2 cut(s)	394, 406
BstV2I	GAAGAC	1 cut(s)	945
BstX2I	RGATCY	2 cut(s)	43, 200
BstYI	RGATCY	2 cut(s)	43, 200
BstZ17I	GTATAC	1 cut(s)	978
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	379, 478, 561
BtgI	CCRYGG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	162, 456
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	377, 560
Csp6I	GTAC	5 cut(s)	106, 175, 353, 593, 780
CviAII	CATG	6 cut(s)	299, 467, 685, 965, 982, 1039
CviQI	GTAC	5 cut(s)	106, 175, 353, 593, 780
DdeI	CTNAG	3 cut(s)	330, 480, 619
DpnI	GATC	6 cut(s)	17, 45, 202, 236, 876, 1008
DpnII	GATC	6 cut(s)	15, 43, 200, 234, 874, 1006
DraI	TTTAAA	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
Eco130I	CCWWGG	2 cut(s)	500, 981
Eco147I	AGGCCT	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	330
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	805
EcoRV	GATATC	1 cut(s)	676
EcoT14I	CCWWGG	2 cut(s)	500, 981
EcoT22I	ATGCAT	1 cut(s)	966
ErhI	CCWWGG	2 cut(s)	500, 981
FaeI	CATG	6 cut(s)	302, 470, 688, 968, 985, 1042
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	6 cut(s)	298, 466, 684, 964, 981, 1038
FauNDI	CATATG	1 cut(s)	340
FblI	GTMKAC	2 cut(s)	262, 977
FspBI	CTAG	5 cut(s)	147, 501, 528, 810, 1001
FspI	TGCGCA	1 cut(s)	35
GlaI	GCGC	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	379, 478, 561
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	6 cut(s)	302, 470, 688, 968, 985, 1042
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	263
HindII	GTYRAC	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	4 cut(s)	154, 335, 572, 760
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	6 cut(s)	221, 263, 353, 392, 404, 978
Hpy188I	TCNGA	4 cut(s)	15, 571, 586, 804
Hpy188III	TCNNGA	8 cut(s)	189, 238, 270, 332, 768, 810, 855, 1010
Hpy8I	GTNNAC	6 cut(s)	221, 263, 353, 392, 404, 978
HpyAV	CCTTC	4 cut(s)	276, 362, 573, 609
HpyCH4III	ACNGT	3 cut(s)	460, 548, 1020
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 167, 537
HpyF3I	CTNAG	3 cut(s)	330, 480, 619
Hsp92II	CATG	6 cut(s)	302, 470, 688, 968, 985, 1042
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	6 cut(s)	15, 43, 200, 234, 874, 1006
LguI	GCTCTTC	1 cut(s)	825
LmnI	GCTCC	1 cut(s)	745
MaeI	CTAG	5 cut(s)	147, 501, 528, 810, 1001
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	6 cut(s)	17, 45, 202, 236, 876, 1008
MboI	GATC	6 cut(s)	15, 43, 200, 234, 874, 1006
MboII	GAAGA	6 cut(s)	326, 431, 716, 842, 950, 1047
MflI	RGATCY	2 cut(s)	43, 200
MhlI	GDGCHC	2 cut(s)	394, 406
MluCI	AATT	5 cut(s)	208, 631, 805, 949, 1045
MnlI	CCTC	5 cut(s)	266, 339, 409, 430, 858
Mph1103I	ATGCAT	1 cut(s)	966
MseI	TTAA	3 cut(s)	207, 411, 882
Mva1269I	GAATGC	1 cut(s)	871
MwoI	GCNNNNNNNGC	3 cut(s)	143, 167, 537
NcoI	CCATGG	1 cut(s)	981
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	6 cut(s)	15, 43, 200, 234, 874, 1006
NlaIII	CATG	6 cut(s)	302, 470, 688, 968, 985, 1042
NlaIV	GGNNCC	1 cut(s)	45
NsbI	TGCGCA	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	966
NspI	RCATGY	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	825
PcsI	WCGNNNNNNNCGW	2 cut(s)	268, 993
PctI	GAATGC	1 cut(s)	871
PfeI	GAWTC	4 cut(s)	154, 335, 572, 760
PflFI	GACNNNGTC	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	377, 560
PsrI	GAACNNNNNNTAC	2 cut(s)	952, 984
PsuI	RGATCY	2 cut(s)	43, 200
PsyI	GACNNNGTC	1 cut(s)	458
RsaI	GTAC	5 cut(s)	107, 176, 354, 594, 781
RsaNI	GTAC	5 cut(s)	106, 175, 353, 593, 780
SalI	GTCGAC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	825
SaqAI	TTAA	3 cut(s)	207, 411, 882
Sau3AI	GATC	6 cut(s)	15, 43, 200, 234, 874, 1006
Sau96I	GGNCC	2 cut(s)	377, 560
SduI	GDGCHC	2 cut(s)	394, 406
SfcI	CTRYAG	3 cut(s)	120, 825, 870
Sse9I	AATT	5 cut(s)	208, 631, 805, 949, 1045
SseBI	AGGCCT	1 cut(s)	478
SspI	AATATT	3 cut(s)	58, 610, 844
SspMI	CTAG	5 cut(s)	147, 501, 528, 810, 1001
StuI	AGGCCT	1 cut(s)	478
StyI	CCWWGG	2 cut(s)	500, 981
TaaI	ACNGT	3 cut(s)	460, 548, 1020
TaqI	TCGA	2 cut(s)	262, 996
TasI	AATT	5 cut(s)	208, 631, 805, 949, 1045
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	4 cut(s)	154, 335, 572, 760
Tru1I	TTAA	3 cut(s)	207, 411, 882
Tru9I	TTAA	3 cut(s)	207, 411, 882
TscAI	CASTG	2 cut(s)	169, 463
TspDTI	ATGAA	3 cut(s)	555, 752, 1047
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	169, 463
Tth111I	GACNNNGTC	1 cut(s)	458
Van91I	CCANNNNNTGG	1 cut(s)	386
VneI	GTGCAC	2 cut(s)	390, 402
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	805
XbaI	TCTAGA	1 cut(s)	809
XceI	RCATGY	1 cut(s)	470
XmaJI	CCTAGG	1 cut(s)	500
XmiI	GTMKAC	2 cut(s)	262, 977
XspI	CTAG	5 cut(s)	147, 501, 528, 810, 1001
Zsp2I	ATGCAT	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.