Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

32639222 .. 32641991

Gene Structure 2770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGGAGAGCATCATTTCTGCCTGGTTTTCGGTTTTCTCCAACTGATGTTGAGCTTGTGAAATACTATTTGAAGAGGAAAGTAATGGGGAAAAGACTTGATGTTAAAGTCATTGCCGAGGTTGACATTTACAAGTACGCCCCTTGGGATCTTCCAGACAAATCTTGTTGGCGATTTGGAGATCTAAAATGGTACTTCTTTTCTCCTATAGAAAAGAAATACGCAACTGGGGCTAGAGTGAATCGTGCCACTGAAGCTGGGTACTGGAAAATGTCAGGAAAGGATAGATCTGTTAATTACAATGGTGAAGTGGTCGGCTGGATCAAGTCTTTAGTTTTTTACAAAGGTCGACCTTCACGAGGAGAACGGACAGATTGGGTTTTGCATGAGTATAGGCTTGAAGATAAGGGCGTGCCTCAGGAATCATATGTTTTATGTGTACTTTTCCAAAAGGAAGGGCAAGGGCCAAAAAATGGTGCACAATATGGTGCACCCTTTAAAGAGGAAGATTGGACTGATGATGAGGTTGAAATCTGTTTAGACACAGTCCCACGTGCAAATAGGCCTGAGCCAGACCTTGTTCTGCCTAGGGGATATAATAGTTCCAGTCTTACTAGCACAGATTGCCCTGAGGGTATGTGCATAGGCCCTTCATCTGAATCCTGCATATCAGATGTTGTACCACCTTCTTGCAATATTTTCCGCTCAGTTCCCAGTAATTCTGTTACAACAGAGAAGCAGTCTGTTTCAGCCAATGCTGATATCCTGTCCATGTTAGATTGCTTTGTGGAAGAAAGCACTTTCCTTATCAATGGCAATGACAAAAATAAGGAGCTTGATAACCTGATTCATTCTGGAAATACAAGTACTACACAGGAGCTTGATATTCTGAATTCTAGAAATGCAAATGCTACAGAAGAGCGTGATAATATTCCTCATTCTGGAAATGCGAATGCTACAGATCATTTTAATAGGAGTGATATTTATAGAGATTTAGCAGACTTGGGCAACTTGGGTAGAGTTGAAGACGGGTATAATTTATCGAGCATGCATGGTTCTCTGTATACCATGGACGAGATTTTCGAGCTAGTTGATCTTGACAAACCGTTGAACTGCGATACTTCCATGTATAATTTACCATCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

383

Amino Acids

43.07

Weight (kDa)

4.93

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 133	5.8e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccBSI	CCGCTC	1 cut(s)	705
AccI	GTMKAC	2 cut(s)	349, 1064
AciI	CCGC	1 cut(s)	703
AclWI	GGATC	2 cut(s)	156, 329
AcsI	RAATTY	1 cut(s)	892
AcuI	CTGAAG	1 cut(s)	273
AcvI	CACGTG	1 cut(s)	554
AfaI	GTAC	6 cut(s)	137, 194, 263, 441, 681, 868
AfiI	CCNNNNNNNGG	3 cut(s)	359, 473, 941
AgsI	TTSAA	5 cut(s)	73, 401, 530, 1025, 1111
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	55, 257, 835, 880, 1087
AluI	AGCT	5 cut(s)	55, 257, 835, 880, 1087
Alw21I	GWGCWC	2 cut(s)	481, 493
Alw44I	GTGCAC	2 cut(s)	477, 489
AlwI	GGATC	2 cut(s)	156, 329
AoxI	GGCC	3 cut(s)	464, 563, 646
ApaLI	GTGCAC	2 cut(s)	477, 489
ApoI	RAATTY	1 cut(s)	892
ArsI	GACNNNNNNTTYG	2 cut(s)	1064, 1096
AspA2I	CCTAGG	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	464, 647
AsuHPI	GGTGA	1 cut(s)	317
AvrII	CCTAGG	1 cut(s)	587
AxyI	CCTNAGG	2 cut(s)	417, 630
BaeGI	GKGCMC	2 cut(s)	481, 493
BauI	CACGAG	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	1032
Bbv12I	GWGCWC	2 cut(s)	481, 493
BccI	CCATC	1 cut(s)	1147
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	5 cut(s)	234, 588, 615, 897, 1088
BfmI	CTRYAG	3 cut(s)	207, 912, 957
BglII	AGATCT	2 cut(s)	181, 287
BlnI	CCTAGG	1 cut(s)	587
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	464, 647
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	2 cut(s)	237, 708
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	2 cut(s)	237, 708
BpiI	GAAGAC	1 cut(s)	1032
Bpu10I	CCTNAGC	1 cut(s)	567
BsaAI	YACGTR	1 cut(s)	554
BsaJI	CCNNGG	4 cut(s)	117, 143, 587, 1068
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 473, 941
Bse1I	ACTGG	4 cut(s)	232, 269, 606, 714
Bse21I	CCTNAGG	2 cut(s)	417, 630
Bse3DI	GCAATG	2 cut(s)	111, 823
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	117, 143, 587, 1068
BseLI	CCNNNNNNNGG	3 cut(s)	359, 473, 941
BseMI	GCAATG	2 cut(s)	111, 823
BseMII	CTCAG	4 cut(s)	431, 558, 621, 720
BseNI	ACTGG	4 cut(s)	232, 269, 606, 714
BseRI	GAGGAG	1 cut(s)	375
BseSI	GKGCMC	2 cut(s)	481, 493
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	3 cut(s)	466, 565, 648
BsiHKAI	GWGCWC	2 cut(s)	481, 493
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	359, 473, 941
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	958
BsnI	GGCC	3 cut(s)	466, 565, 648
Bsp1286I	GDGCHC	2 cut(s)	481, 493
Bsp143I	GATC	6 cut(s)	148, 181, 287, 321, 961, 1093
Bsp19I	CCATGG	1 cut(s)	1068
BspACI	CCGC	1 cut(s)	703
BspANI	GGCC	3 cut(s)	466, 565, 648
BspCNI	CTCAG	4 cut(s)	430, 559, 622, 719
BspPI	GGATC	2 cut(s)	156, 329
BspQI	GCTCTTC	1 cut(s)	912
BsrBI	CCGCTC	1 cut(s)	705
BsrDI	GCAATG	2 cut(s)	111, 823
BsrI	ACTGG	4 cut(s)	232, 269, 606, 714
BssECI	CCNNGG	4 cut(s)	117, 143, 587, 1068
BssMI	GATC	6 cut(s)	148, 181, 287, 321, 961, 1093
BssNAI	GTATAC	1 cut(s)	1065
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	3 cut(s)	143, 587, 1068
Bst1107I	GTATAC	1 cut(s)	1065
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	547, 1107
Bst6I	CTCTTC	2 cut(s)	68, 912
BstAPI	GCANNNNNTGC	1 cut(s)	624
BstBAI	YACGTR	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	413, 1049
BstDEI	CTNAG	4 cut(s)	417, 567, 630, 706
BstDSI	CCRYGG	1 cut(s)	1068
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstKTI	GATC	6 cut(s)	151, 184, 290, 324, 964, 1096
BstMBI	GATC	6 cut(s)	148, 181, 287, 321, 961, 1093
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	1051
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	3 cut(s)	207, 912, 957
BstSLI	GKGCMC	2 cut(s)	481, 493
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	3 cut(s)	148, 181, 287
BstYI	RGATCY	3 cut(s)	148, 181, 287
BstZ17I	GTATAC	1 cut(s)	1065
Bsu36I	CCTNAGG	2 cut(s)	417, 630
BsuRI	GGCC	3 cut(s)	466, 565, 648
BtgI	CCRYGG	1 cut(s)	1068
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	413, 1049
Cfr13I	GGNCC	2 cut(s)	464, 647
Csp6I	GTAC	6 cut(s)	136, 193, 262, 440, 680, 867
CviAII	CATG	6 cut(s)	386, 772, 1048, 1052, 1069, 1126
CviQI	GTAC	6 cut(s)	136, 193, 262, 440, 680, 867
DdeI	CTNAG	4 cut(s)	417, 567, 630, 706
DpnI	GATC	6 cut(s)	150, 183, 289, 323, 963, 1095
DpnII	GATC	6 cut(s)	148, 181, 287, 321, 961, 1093
DraI	TTTAAA	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	68, 912
EarI	CTCTTC	2 cut(s)	68, 912
Eco130I	CCWWGG	3 cut(s)	143, 587, 1068
Eco147I	AGGCCT	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	273
Eco72I	CACGTG	1 cut(s)	554
Eco81I	CCTNAGG	2 cut(s)	417, 630
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	3 cut(s)	143, 587, 1068
EcoT22I	ATGCAT	1 cut(s)	1053
ErhI	CCWWGG	3 cut(s)	143, 587, 1068
FaeI	CATG	6 cut(s)	389, 775, 1051, 1055, 1072, 1129
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	6 cut(s)	385, 771, 1047, 1051, 1068, 1125
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	349, 1064
FspBI	CTAG	5 cut(s)	234, 588, 615, 897, 1088
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	466, 565, 648
Hin1II	CATG	6 cut(s)	389, 775, 1051, 1055, 1072, 1129
HincII	GTYRAC	2 cut(s)	124, 350
HindII	GTYRAC	2 cut(s)	124, 350
HinfI	GANTC	4 cut(s)	241, 422, 659, 847
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	6 cut(s)	124, 350, 440, 479, 491, 1065
Hpy188I	TCNGA	3 cut(s)	658, 673, 891
Hpy188III	TCNNGA	8 cut(s)	155, 276, 357, 419, 855, 897, 942, 1097
Hpy8I	GTNNAC	6 cut(s)	124, 350, 440, 479, 491, 1065
HpyAV	CCTTC	4 cut(s)	363, 449, 660, 696
HpyCH4III	ACNGT	2 cut(s)	547, 1107
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	9 cut(s)	385, 479, 491, 557, 642, 666, 693, 905, 1051
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
HpyF3I	CTNAG	4 cut(s)	417, 567, 630, 706
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	6 cut(s)	389, 775, 1051, 1055, 1072, 1129
Kzo9I	GATC	6 cut(s)	148, 181, 287, 321, 961, 1093
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	2 cut(s)	832, 877
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	5 cut(s)	234, 588, 615, 897, 1088
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	6 cut(s)	150, 183, 289, 323, 963, 1095
MbiI	CCGCTC	1 cut(s)	705
MboI	GATC	6 cut(s)	148, 181, 287, 321, 961, 1093
MboII	GAAGA	7 cut(s)	85, 143, 413, 518, 803, 929, 1037
MflI	RGATCY	3 cut(s)	148, 181, 287
MhlI	GDGCHC	2 cut(s)	481, 493
MluCI	AATT	5 cut(s)	295, 718, 892, 1036, 1132
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	69, 112, 353, 426, 496, 517, 625, 945
Mph1103I	ATGCAT	1 cut(s)	1053
MseI	TTAA	4 cut(s)	105, 294, 498, 969
MspR9I	CCNGG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	958
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
NcoI	CCATGG	1 cut(s)	1068
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	6 cut(s)	148, 181, 287, 321, 961, 1093
NlaIII	CATG	6 cut(s)	389, 775, 1051, 1055, 1072, 1129
NmeAIII	GCCGAG	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	1053
NspI	RCATGY	1 cut(s)	1051
PaeI	GCATGC	1 cut(s)	1051
PceI	AGGCCT	1 cut(s)	565
PciSI	GCTCTTC	1 cut(s)	912
PcsI	WCGNNNNNNNCGW	2 cut(s)	355, 1080
PctI	GAATGC	1 cut(s)	958
PfeI	GAWTC	4 cut(s)	241, 422, 659, 847
PflFI	GACNNNGTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	473
PmaCI	CACGTG	1 cut(s)	554
PmlI	CACGTG	1 cut(s)	554
Ppu21I	YACGTR	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	22
PspCI	CACGTG	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	464, 647
PsuI	RGATCY	3 cut(s)	148, 181, 287
PsyI	GACNNNGTC	1 cut(s)	545
RsaI	GTAC	6 cut(s)	137, 194, 263, 441, 681, 868
RsaNI	GTAC	6 cut(s)	136, 193, 262, 440, 680, 867
SalI	GTCGAC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	4 cut(s)	105, 294, 498, 969
Sau3AI	GATC	6 cut(s)	148, 181, 287, 321, 961, 1093
Sau96I	GGNCC	2 cut(s)	464, 647
ScaI	AGTACT	1 cut(s)	868
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	481, 493
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	3 cut(s)	207, 912, 957
SphI	GCATGC	1 cut(s)	1051
Sse9I	AATT	5 cut(s)	295, 718, 892, 1036, 1132
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	703
SspI	AATATT	2 cut(s)	697, 931
SspMI	CTAG	5 cut(s)	234, 588, 615, 897, 1088
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	3 cut(s)	143, 587, 1068
TaaI	ACNGT	2 cut(s)	547, 1107
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	3 cut(s)	349, 1043, 1083
TasI	AATT	5 cut(s)	295, 718, 892, 1036, 1132
TatI	WGTACW	2 cut(s)	439, 866
TfiI	GAWTC	4 cut(s)	241, 422, 659, 847
Tru1I	TTAA	4 cut(s)	105, 294, 498, 969
Tru9I	TTAA	4 cut(s)	105, 294, 498, 969
TscAI	CASTG	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	642, 839
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	473
VneI	GTGCAC	2 cut(s)	477, 489
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	892
XbaI	TCTAGA	1 cut(s)	896
XceI	RCATGY	1 cut(s)	1051
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	2 cut(s)	349, 1064
XspI	CTAG	5 cut(s)	234, 588, 615, 897, 1088
ZrmI	AGTACT	1 cut(s)	868
Zsp2I	ATGCAT	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.