Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Reverse (-)

38337482 .. 38341308

Gene Structure 3827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG203300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGAGAGCATCATTTCCGCCTGGTTTTCGGTTTTCTCCAACTGATGTTGAGCTTGTGAAATACTATTTGAAGAGGAAAGTAATGGGGAAAAGACTTCATGTTAAAGTCATTGCCGAGGTTGACATTTACAAGTACGCTCCTTGGGATCTTCCAGACAAATCTTGTTGGCGATTTGGAGACCTAAAATGGTACTTCTTTTCTCCTATAGAAAAGAAATATGCAACTGGGGCTAGAGTGAATCGTGCCACTGAAGCTGGGTACTGGAAAATGTCAGGAAAGGATAGATCTGTTAATTACAATGGTGAACTGGTCGGCTGGATCAAGACTTTAGTTTTTTACACAGGTCGACCTTCACGAGGAGAACGGACAGATTGGGTTTTGCATGAGTATAGGCTTGAAGATAAGGGCGTGCCTCAGGAATCATATGTTTTATGTGTACTTTTCCAAAAGGAAGGGCAAGGGCCAAAAAATGGTGCACAATATGGTGCACCCTTTAAAGAGGAAGATTGGACTGATGATGAGGTTGAAATCTGTTTAGACACTGTCCCACATGCAAATAGGCCTGAGCCAGACCTTGTTCTGCCTAGGGGATATAATAGTTCCAGTCTTACTAGCACAGATTGCCCTGACGGTATGTGCATAGGCCCTTCATCTGAATCCTGCATATCAGATGTTGTACCACCTTCTTGCAATATTTTCCACTCAGTTCCCAGTAATTCTGTTACAACAGAGAAGCAGTCTGTTTCAGCCAATGCTGATATCCTGTCCATGTTAGATTGCTTTGTGGAAGAAAGCACTTTCCTTATCAATGGCAATGACAAAAATAAGGTGTGTAGTGCACTCTTCCCATTTTGCTACATGTTGTATAGGTATATCACTTTCCTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

297

Amino Acids

33.78

Weight (kDa)

5.9

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	1.5e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	349
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	156, 329
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	5 cut(s)	137, 194, 263, 441, 681
AfiI	CCNNNNNNNGG	2 cut(s)	359, 473
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	3 cut(s)	73, 401, 530
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	55, 257
AluI	AGCT	2 cut(s)	55, 257
Alw21I	GWGCWC	3 cut(s)	481, 493, 844
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	3 cut(s)	477, 489, 840
AlwI	GGATC	2 cut(s)	156, 329
AoxI	GGCC	3 cut(s)	464, 563, 646
ApaLI	GTGCAC	3 cut(s)	477, 489, 840
AspA2I	CCTAGG	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	464, 647
AsuHPI	GGTGA	1 cut(s)	317
AvrII	CCTAGG	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	417
BaeGI	GKGCMC	3 cut(s)	481, 493, 844
BauI	CACGAG	1 cut(s)	357
Bbv12I	GWGCWC	3 cut(s)	481, 493, 844
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	3 cut(s)	234, 588, 615
BfmI	CTRYAG	1 cut(s)	207
BglII	AGATCT	1 cut(s)	287
BlnI	CCTAGG	1 cut(s)	587
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	464, 647
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	2 cut(s)	237, 708
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	2 cut(s)	237, 708
Bpu10I	CCTNAGC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	117, 143, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 473
Bse1I	ACTGG	5 cut(s)	232, 269, 315, 606, 714
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	2 cut(s)	111, 823
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	117, 143, 587
BseLI	CCNNNNNNNGG	2 cut(s)	359, 473
BseMI	GCAATG	2 cut(s)	111, 823
BseMII	CTCAG	3 cut(s)	431, 558, 720
BseNI	ACTGG	5 cut(s)	232, 269, 315, 606, 714
BseRI	GAGGAG	1 cut(s)	375
BseSI	GKGCMC	3 cut(s)	481, 493, 844
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	3 cut(s)	466, 565, 648
BsiHKAI	GWGCWC	3 cut(s)	481, 493, 844
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	359, 473
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	3 cut(s)	466, 565, 648
Bso31I	GGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	3 cut(s)	481, 493, 844
Bsp143I	GATC	3 cut(s)	148, 287, 321
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	3 cut(s)	466, 565, 648
BspCNI	CTCAG	3 cut(s)	430, 559, 719
BspPI	GGATC	2 cut(s)	156, 329
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	2 cut(s)	111, 823
BsrI	ACTGG	5 cut(s)	232, 269, 315, 606, 714
BssECI	CCNNGG	3 cut(s)	117, 143, 587
BssMI	GATC	3 cut(s)	148, 287, 321
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	143, 587
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	547, 635
Bst6I	CTCTTC	2 cut(s)	68, 851
BstAPI	GCANNNNNTGC	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	3 cut(s)	417, 567, 706
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstKTI	GATC	3 cut(s)	151, 290, 324
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	148, 287, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	2 cut(s)	557, 865
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	3 cut(s)	481, 493, 844
BstX2I	RGATCY	2 cut(s)	148, 287
BstYI	RGATCY	2 cut(s)	148, 287
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	466, 565, 648
BtsIMutI	CAGTG	2 cut(s)	249, 543
Cac8I	GCNNGC	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	464, 647
Csp6I	GTAC	5 cut(s)	136, 193, 262, 440, 680
CviAII	CATG	5 cut(s)	101, 386, 554, 772, 862
CviQI	GTAC	5 cut(s)	136, 193, 262, 440, 680
DdeI	CTNAG	3 cut(s)	417, 567, 706
DpnI	GATC	3 cut(s)	150, 289, 323
DpnII	GATC	3 cut(s)	148, 287, 321
DraI	TTTAAA	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	68, 851
EarI	CTCTTC	2 cut(s)	68, 851
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	143, 587
Eco147I	AGGCCT	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	417
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	2 cut(s)	143, 587
ErhI	CCWWGG	2 cut(s)	143, 587
FaeI	CATG	5 cut(s)	104, 389, 557, 775, 865
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	5 cut(s)	100, 385, 553, 771, 861
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	349
FspBI	CTAG	3 cut(s)	234, 588, 615
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	466, 565, 648
Hin1II	CATG	5 cut(s)	104, 389, 557, 775, 865
HincII	GTYRAC	2 cut(s)	124, 350
HindII	GTYRAC	2 cut(s)	124, 350
HinfI	GANTC	3 cut(s)	241, 422, 659
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	7 cut(s)	124, 308, 350, 440, 479, 491, 842
Hpy188I	TCNGA	2 cut(s)	658, 673
Hpy188III	TCNNGA	5 cut(s)	155, 276, 325, 357, 419
Hpy8I	GTNNAC	7 cut(s)	124, 308, 350, 440, 479, 491, 842
HpyAV	CCTTC	4 cut(s)	363, 449, 660, 696
HpyCH4III	ACNGT	2 cut(s)	547, 635
HpyCH4V	TGCA	9 cut(s)	224, 385, 479, 491, 557, 642, 666, 693, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
HpyF3I	CTNAG	3 cut(s)	417, 567, 706
Hsp92II	CATG	5 cut(s)	104, 389, 557, 775, 865
Kzo9I	GATC	3 cut(s)	148, 287, 321
LmnI	GCTCC	1 cut(s)	145
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	3 cut(s)	234, 588, 615
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	3 cut(s)	150, 289, 323
MboI	GATC	3 cut(s)	148, 287, 321
MboII	GAAGA	6 cut(s)	85, 143, 413, 518, 803, 838
MflI	RGATCY	2 cut(s)	148, 287
MhlI	GDGCHC	3 cut(s)	481, 493, 844
MluCI	AATT	3 cut(s)	295, 718, 889
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	69, 112, 353, 426, 496, 517
MseI	TTAA	4 cut(s)	105, 294, 498, 892
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	3 cut(s)	148, 287, 321
NlaIII	CATG	5 cut(s)	104, 389, 557, 775, 865
NmeAIII	GCCGAG	1 cut(s)	142
NspI	RCATGY	2 cut(s)	557, 865
PceI	AGGCCT	1 cut(s)	565
PciI	ACATGT	1 cut(s)	861
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	241, 422, 659
PflFI	GACNNNGTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	473
PscI	ACATGT	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	464, 647
PsuI	RGATCY	2 cut(s)	148, 287
PsyI	GACNNNGTC	1 cut(s)	545
RsaI	GTAC	5 cut(s)	137, 194, 263, 441, 681
RsaNI	GTAC	5 cut(s)	136, 193, 262, 440, 680
SalI	GTCGAC	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	105, 294, 498, 892
Sau3AI	GATC	3 cut(s)	148, 287, 321
Sau96I	GGNCC	2 cut(s)	464, 647
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	3 cut(s)	481, 493, 844
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	1 cut(s)	207
Sse9I	AATT	3 cut(s)	295, 718, 889
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	3 cut(s)	234, 588, 615
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	143, 587
TaaI	ACNGT	2 cut(s)	547, 635
TaqI	TCGA	1 cut(s)	349
TasI	AATT	3 cut(s)	295, 718, 889
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	3 cut(s)	241, 422, 659
Tru1I	TTAA	4 cut(s)	105, 294, 498, 892
Tru9I	TTAA	4 cut(s)	105, 294, 498, 892
TscAI	CASTG	2 cut(s)	256, 550
TspDTI	ATGAA	2 cut(s)	89, 642
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	2 cut(s)	256, 550
Tth111I	GACNNNGTC	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	473
VneI	GTGCAC	3 cut(s)	477, 489, 840
XagI	CCTNNNNNAGG	1 cut(s)	357
XceI	RCATGY	2 cut(s)	557, 865
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	3 cut(s)	234, 588, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.