Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

3254083 .. 3258277

Gene Structure 4195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGAAATCATCCTTGGCTCCTGGGTTTCGTTTCAAGCCAACTGATGTTGAGCTTGTGCAATACTACTTGAAGAGAAAGTTACTGGGGAAAAGGCTTGGTTTTAAAGTCATTGCAGAGGTTGACATTTACAAGTATGATCCTTGGGATCTTCCAGACAAATCTTGCTGGGAAAGTGGGGATCTGAAACGGTATTTCTTTTGTCCGAGAGAAAAGAAGTATCGTAATGGGAATAGAATTCAACGTGCCACTGAAGGTGGTTACTGGAAGACCACAGGAAAGGATAGATCCGTTCTTTACAGTGGTGAAGTTGTTGGGTGGATAAAAACTTTAATTTTTCACACTGGTCGAGCCCCACGTGGAGATCGAACAAATTGGGTTATGCATGAGTATAGGCTTGAAGATCAGGGCCTGGCTGATAGGGGTGTGCCTCTGGACTCATATGTGATCTGTATGATTTTCCAAAAAGATGGGTTGGGGCCGAAAATTGGTGCACAATATGGTGCACCCTTTAAAGAGGAAGACTGGACTGATGATGAAGTTGAAATTTGTTCAGAAGCAATCCCGCATGAAAATATGTCTGAGCCAAACCTTGTAGTGCCGAGCAACTGTAATAGTTCCATCACTACTAGCGGACATACCCCAAAGGGTATACACACAAGTCCTTCTGAATCATGCATATCAGATGTTTTACCACCTTCTTGCAATGTTCACCAATTGGTTTCCAGTAATCATGTTACAATGGAGAAGCTTCATGGTTCCGATGATGATATCTTGTCAATGTTGAATTGCTTCACTGAAGGAAGCACTTCCTTAATGAAAGAAAATGACAAAAATGAGGAGCTTGGTAATGTCATTCCTTCTGGAAATGCTAGTGCTACACCCAATTTCAATAGTGATGATATTTATGAAGGTTTAGGAGACTTGGGGAAGATGGCTAGAGTGAGTGAAGATGGATATAATTTCTCCAATGTGCATAATTCAATCTTTGCTCCGGCTCAAATGCAGCTAGGTGACAATGAGCAATTCTTGGAGCTGGATGATCTATCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

352

Amino Acids

39.4

Weight (kDa)

5.08

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	652
AciI	CCGC	2 cut(s)	566, 633
AclWI	GGATC	4 cut(s)	134, 156, 189, 282
AcsI	RAATTY	2 cut(s)	237, 546
AcuI	CTGAAG	2 cut(s)	273, 819
AcvI	CACGTG	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	8 cut(s)	37, 73, 242, 401, 545, 787, 892, 984
AjnI	CCWGG	2 cut(s)	22, 411
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	5 cut(s)	55, 751, 844, 1009, 1036
AluI	AGCT	5 cut(s)	55, 751, 844, 1009, 1036
Alw21I	GWGCWC	2 cut(s)	496, 508
Alw26I	GTCTC	1 cut(s)	915
Alw44I	GTGCAC	2 cut(s)	492, 504
AlwI	GGATC	4 cut(s)	134, 156, 189, 282
AlwNI	CAGNNNCTG	1 cut(s)	412
AoxI	GGCC	2 cut(s)	409, 479
ApaLI	GTGCAC	2 cut(s)	492, 504
ApeKI	GCWGC	1 cut(s)	1006
ApoI	RAATTY	2 cut(s)	237, 546
Asp700I	GAANNNNTTC	2 cut(s)	791, 808
AspS9I	GGNCC	2 cut(s)	409, 479
AsuHPI	GGTGA	3 cut(s)	317, 704, 1025
BaeGI	GKGCMC	2 cut(s)	496, 508
BanII	GRGCYC	1 cut(s)	355
BbrPI	CACGTG	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	275, 528
Bbv12I	GWGCWC	2 cut(s)	496, 508
BbvI	GCAGC	1 cut(s)	1018
BccI	CCATC	4 cut(s)	464, 629, 928, 947
BciT130I	CCWGG	2 cut(s)	24, 413
BcoDI	GTCTC	1 cut(s)	915
BfaI	CTAG	4 cut(s)	630, 873, 939, 1010
BisI	GCNGC	1 cut(s)	1007
BlsI	GCNGC	1 cut(s)	1008
Bme1390I	CCNGG	2 cut(s)	24, 413
BmgT120I	GGNCC	2 cut(s)	409, 479
BmiI	GGNNCC	3 cut(s)	21, 480, 760
BmrFI	CCNGG	2 cut(s)	24, 413
BmrI	ACTGGG	1 cut(s)	95
BmuI	ACTGGG	1 cut(s)	95
BpiI	GAAGAC	2 cut(s)	275, 528
BsaAI	YACGTR	1 cut(s)	359
BsaJI	CCNNGG	3 cut(s)	15, 23, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	5 cut(s)	90, 269, 349, 530, 726
Bse3DI	GCAATG	2 cut(s)	111, 712
BseBI	CCWGG	2 cut(s)	24, 413
BseDI	CCNNGG	3 cut(s)	15, 23, 143
BseGI	GGATG	2 cut(s)	11, 1045
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	2 cut(s)	111, 712
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	5 cut(s)	90, 269, 349, 530, 726
BseRI	GAGGAG	1 cut(s)	854
BseSI	GKGCMC	2 cut(s)	496, 508
BseXI	GCAGC	1 cut(s)	1018
BseYI	CCCAGC	1 cut(s)	168
BshFI	GGCC	2 cut(s)	411, 481
BsiHKAI	GWGCWC	2 cut(s)	496, 508
BsiSI	CCGG	1 cut(s)	995
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	915
BsnI	GGCC	2 cut(s)	411, 481
Bsp1286I	GDGCHC	3 cut(s)	355, 496, 508
Bsp143I	GATC	8 cut(s)	139, 148, 181, 287, 364, 403, 447, 1042
BspACI	CCGC	2 cut(s)	566, 633
BspANI	GGCC	2 cut(s)	411, 481
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	21, 480, 760
BspPI	GGATC	4 cut(s)	134, 156, 189, 282
BsrDI	GCAATG	2 cut(s)	111, 712
BsrI	ACTGG	5 cut(s)	90, 269, 349, 530, 726
BssECI	CCNNGG	3 cut(s)	15, 23, 143
BssMI	GATC	8 cut(s)	139, 148, 181, 287, 364, 403, 447, 1042
BssNAI	GTATAC	1 cut(s)	653
BssT1I	CCWWGG	2 cut(s)	15, 143
Bst1107I	GTATAC	1 cut(s)	653
Bst2UI	CCWGG	2 cut(s)	24, 413
Bst4CI	ACNGT	3 cut(s)	192, 302, 611
Bst6I	CTCTTC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	11, 1045
BstKTI	GATC	8 cut(s)	142, 151, 184, 290, 367, 406, 450, 1045
BstMAI	GTCTC	1 cut(s)	915
BstMBI	GATC	8 cut(s)	139, 148, 181, 287, 364, 403, 447, 1042
BstNI	CCWGG	2 cut(s)	24, 413
BstSCI	CCNGG	2 cut(s)	22, 411
BstSLI	GKGCMC	2 cut(s)	496, 508
BstV1I	GCAGC	1 cut(s)	1018
BstV2I	GAAGAC	2 cut(s)	275, 528
BstX2I	RGATCY	3 cut(s)	148, 181, 287
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	3 cut(s)	148, 181, 287
BstZ17I	GTATAC	1 cut(s)	653
BsuRI	GGCC	2 cut(s)	411, 481
BtsCI	GGATG	2 cut(s)	11, 1045
BtsIMutI	CAGTG	4 cut(s)	249, 307, 342, 795
CaiI	CAGNNNCTG	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	409, 479
CviAII	CATG	5 cut(s)	386, 569, 675, 734, 755
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	8 cut(s)	141, 150, 183, 289, 366, 405, 449, 1044
DpnII	GATC	8 cut(s)	139, 148, 181, 287, 364, 403, 447, 1042
DraI	TTTAAA	2 cut(s)	106, 514
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	15, 143
Eco24I	GRGCYC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	772
Eco57I	CTGAAG	2 cut(s)	273, 819
Eco72I	CACGTG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	22, 411
EcoRV	GATATC	1 cut(s)	772
EcoT14I	CCWWGG	2 cut(s)	15, 143
EcoT22I	ATGCAT	2 cut(s)	387, 680
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	15, 143
FaeI	CATG	5 cut(s)	389, 572, 678, 737, 758
FatI	CATG	5 cut(s)	385, 568, 674, 733, 754
FauI	CCCGC	1 cut(s)	573
FauNDI	CATATG	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	1 cut(s)	1007
FokI	GGATG	1 cut(s)	1052
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	1 cut(s)	1007
FspBI	CTAG	4 cut(s)	630, 873, 939, 1010
GluI	GCNGC	1 cut(s)	1007
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	411, 481
HapII	CCGG	1 cut(s)	995
Hin1II	CATG	5 cut(s)	389, 572, 678, 737, 758
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	2 cut(s)	437, 671
HpaII	CCGG	1 cut(s)	995
HphI	GGTGA	3 cut(s)	317, 704, 1025
Hpy166II	GTNNAC	5 cut(s)	124, 494, 506, 653, 712
Hpy188I	TCNGA	7 cut(s)	186, 207, 556, 583, 670, 685, 763
Hpy188III	TCNNGA	3 cut(s)	155, 434, 864
Hpy8I	GTNNAC	5 cut(s)	124, 494, 506, 653, 712
HpyAV	CCTTC	6 cut(s)	248, 675, 708, 794, 870, 905
HpyCH4III	ACNGT	3 cut(s)	192, 302, 611
HpyCH4IV	ACGT	2 cut(s)	244, 358
HpyCH4V	TGCA	9 cut(s)	61, 116, 385, 494, 506, 678, 705, 976, 1006
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	2 cut(s)	244, 358
Hsp92II	CATG	5 cut(s)	389, 572, 678, 737, 758
Kzo9I	GATC	8 cut(s)	139, 148, 181, 287, 364, 403, 447, 1042
LmnI	GCTCC	4 cut(s)	25, 841, 997, 1033
Lsp1109I	GCAGC	1 cut(s)	1018
MaeI	CTAG	4 cut(s)	630, 873, 939, 1010
MaeII	ACGT	2 cut(s)	244, 358
MaeIII	GTNAC	4 cut(s)	81, 260, 736, 1013
MalI	GATC	8 cut(s)	141, 150, 183, 289, 366, 405, 449, 1044
MboI	GATC	8 cut(s)	139, 148, 181, 287, 364, 403, 447, 1042
MboII	GAAGA	7 cut(s)	85, 143, 280, 413, 533, 943, 962
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	3 cut(s)	148, 181, 287
MhlI	GDGCHC	3 cut(s)	355, 496, 508
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	4 cut(s)	112, 441, 511, 832
Mph1103I	ATGCAT	2 cut(s)	387, 680
MroXI	GAANNNNTTC	2 cut(s)	791, 808
MseI	TTAA	4 cut(s)	105, 332, 513, 815
MspI	CCGG	1 cut(s)	995
MspR9I	CCNGG	2 cut(s)	24, 413
MunI	CAATTG	1 cut(s)	716
MvaI	CCWGG	2 cut(s)	24, 413
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	8 cut(s)	139, 148, 181, 287, 364, 403, 447, 1042
NlaIII	CATG	5 cut(s)	389, 572, 678, 737, 758
NlaIV	GGNNCC	3 cut(s)	21, 480, 760
NmeAIII	GCCGAG	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	1013
NsiI	ATGCAT	2 cut(s)	387, 680
PcsI	WCGNNNNNNNCGW	2 cut(s)	355, 364
PdmI	GAANNNNTTC	2 cut(s)	791, 808
PfeI	GAWTC	1 cut(s)	671
PkrI	GCNGC	1 cut(s)	1008
PleI	GAGTC	1 cut(s)	431
PmaCI	CACGTG	1 cut(s)	359
PmlI	CACGTG	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	22, 411
PspCI	CACGTG	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	2 cut(s)	22, 411
PspN4I	GGNNCC	3 cut(s)	21, 480, 760
PspPI	GGNCC	2 cut(s)	409, 479
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	3 cut(s)	148, 181, 287
SaqAI	TTAA	4 cut(s)	105, 332, 513, 815
SatI	GCNGC	1 cut(s)	1007
Sau3AI	GATC	8 cut(s)	139, 148, 181, 287, 364, 403, 447, 1042
Sau96I	GGNCC	2 cut(s)	409, 479
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	2 cut(s)	24, 413
SduI	GDGCHC	3 cut(s)	355, 496, 508
SsiI	CCGC	2 cut(s)	566, 633
SspMI	CTAG	4 cut(s)	630, 873, 939, 1010
StyD4I	CCNGG	2 cut(s)	22, 411
StyI	CCWWGG	2 cut(s)	15, 143
TaaI	ACNGT	3 cut(s)	192, 302, 611
TaiI	ACGT	2 cut(s)	247, 361
TaqI	TCGA	2 cut(s)	349, 367
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	4 cut(s)	105, 332, 513, 815
Tru9I	TTAA	4 cut(s)	105, 332, 513, 815
TscAI	CASTG	4 cut(s)	256, 307, 349, 802
TseFI	GTSAC	1 cut(s)	1013
TseI	GCWGC	1 cut(s)	1006
Tsp45I	GTSAC	1 cut(s)	1013
TspDTI	ATGAA	5 cut(s)	552, 585, 743, 833, 924
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	4 cut(s)	256, 307, 349, 802
VneI	GTGCAC	2 cut(s)	492, 504
XapI	RAATTY	2 cut(s)	237, 546
XmiI	GTMKAC	1 cut(s)	652
XmnI	GAANNNNTTC	2 cut(s)	791, 808
XspI	CTAG	4 cut(s)	630, 873, 939, 1010
Zsp2I	ATGCAT	2 cut(s)	387, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.