Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Reverse (-)

34053891 .. 34056687

Gene Structure 2797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG203500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGGAGAGCATCATTTCCGCCTGGTTTTCGGTTTTCTCCAACTGATGTTGAGCTTGTGAAATACTATTTGAAGAGGAAAGTAATGGGGAAAAGACTTCATGTTAAAGTCATTGCCGAGGTTGACATTTACAAGTACGCTCCTTGGGATCTTCCAGACAAATCTTGTTGGCGATTTGGAGATCTAAAATGGTACTTCTTTTCTCCTATAGAAAAGAAATATGCAACTGGGGCTAGAGTGAATCGTGCCACTGAAGCTGGGTACTGGAAAATGTCAGGAAAGGATAGATCTGTTAATTACAATGGTGACGTGGTCGGCTGGATCAAGTCTTTAGTTTTTTACACAGGTCGACCTTCACGAGGAGAACGGACAGATTGGGTTTTGCATGAGTATAGGCTTGAAGATAAGGGTGTGCCTCAGGAATCATATGTTTTATGTGTACTTTTCCAAAAGGAAGGGCAAGGGCCAAAAAATGGTGCACAATATGGTGCACCCTTTAAAGAGGAAGATTGGACTGATGATGAGGTTGAAATCTGTTTAGACACAGTCCCACATGCAAATGGGCCTGAGCCAGACCTTGTTCTGCCTAGGGGATATAATACTTCCAGTCTTACTAGCACAGATTGCCCTGACGGTATGTGCATAGGCCCTTCATCTGAATCCTGCATATCAGATGTTGTACCACCTTCTTGCAATATTTTCCACTCAGTTCCCAGTAATTCTGTTACAACAGAGAAGCAGTCTGTTTCAGCCAATGCTGATATCCTGTCCATGTTAGATTGCTTTGTGGAAGAAAGCACTTTCCTTATCAATGGCAATGACAATGACAAAAATAAGGAGCTTGATAGCCTGATTCATTCTGGAAATACAAGTACTACACAGAAGCTTGATATTCTGAATTCTAGAAATGCAAATGCTACAGAAGAGCGTGATAATATTCCTCATTCTGGAAATGCAAATGCTACAGATCATTTTAATAGAAGTGATATTTATAGAGATTTAGCAGACTTGGGCAACTTGGGTAGAGTTGAAGACGGGCATAATTTATCGAGTATGCATGGTTCTCTGTATACCATGGACGAGATTTTCGAGCTAGTTGATCTTGACAAACCGTTGAACTGCGATACTTCCATTTATAATTTACCATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

384

Amino Acids

43.05

Weight (kDa)

4.99

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	6.2e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1137
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccI	GTMKAC	2 cut(s)	349, 1070
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	156, 329
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	6 cut(s)	137, 194, 263, 441, 681, 874
AfiI	CCNNNNNNNGG	3 cut(s)	359, 473, 947
AgsI	TTSAA	5 cut(s)	73, 401, 530, 1031, 1117
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	55, 257, 841, 886, 1093
AluI	AGCT	5 cut(s)	55, 257, 841, 886, 1093
Alw21I	GWGCWC	2 cut(s)	481, 493
Alw44I	GTGCAC	2 cut(s)	477, 489
AlwI	GGATC	2 cut(s)	156, 329
AoxI	GGCC	3 cut(s)	464, 563, 646
ApaLI	GTGCAC	2 cut(s)	477, 489
ApoI	RAATTY	1 cut(s)	898
ArsI	GACNNNNNNTTYG	2 cut(s)	1070, 1102
AspA2I	CCTAGG	1 cut(s)	587
AspS9I	GGNCC	3 cut(s)	464, 563, 647
AsuHPI	GGTGA	1 cut(s)	317
AvrII	CCTAGG	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	417
BaeGI	GKGCMC	2 cut(s)	481, 493
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	1038
Bbv12I	GWGCWC	2 cut(s)	481, 493
BccI	CCATC	1 cut(s)	1153
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	5 cut(s)	234, 588, 615, 903, 1094
BfmI	CTRYAG	3 cut(s)	207, 918, 963
BglII	AGATCT	2 cut(s)	181, 287
BlnI	CCTAGG	1 cut(s)	587
BmcAI	AGTACT	1 cut(s)	874
Bme1390I	CCNGG	1 cut(s)	24
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	464, 563, 647
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	2 cut(s)	237, 708
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	2 cut(s)	237, 708
BpiI	GAAGAC	1 cut(s)	1038
Bpu10I	CCTNAGC	1 cut(s)	567
BsaJI	CCNNGG	4 cut(s)	117, 143, 587, 1074
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 473, 947
Bse1I	ACTGG	4 cut(s)	232, 269, 606, 714
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	2 cut(s)	111, 823
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	117, 143, 587, 1074
BseLI	CCNNNNNNNGG	3 cut(s)	359, 473, 947
BseMI	GCAATG	2 cut(s)	111, 823
BseMII	CTCAG	3 cut(s)	431, 558, 720
BseNI	ACTGG	4 cut(s)	232, 269, 606, 714
BseRI	GAGGAG	1 cut(s)	375
BseSI	GKGCMC	2 cut(s)	481, 493
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	3 cut(s)	466, 565, 648
BsiHKAI	GWGCWC	2 cut(s)	481, 493
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	359, 473, 947
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	3 cut(s)	466, 565, 648
Bsp1286I	GDGCHC	2 cut(s)	481, 493
Bsp143I	GATC	6 cut(s)	148, 181, 287, 321, 967, 1099
Bsp19I	CCATGG	1 cut(s)	1074
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	3 cut(s)	466, 565, 648
BspCNI	CTCAG	3 cut(s)	430, 559, 719
BspPI	GGATC	2 cut(s)	156, 329
BspQI	GCTCTTC	1 cut(s)	918
BsrDI	GCAATG	2 cut(s)	111, 823
BsrI	ACTGG	4 cut(s)	232, 269, 606, 714
BssECI	CCNNGG	4 cut(s)	117, 143, 587, 1074
BssMI	GATC	6 cut(s)	148, 181, 287, 321, 967, 1099
BssNAI	GTATAC	1 cut(s)	1071
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	3 cut(s)	143, 587, 1074
Bst1107I	GTATAC	1 cut(s)	1071
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	547, 635, 1113
Bst6I	CTCTTC	2 cut(s)	68, 918
BstAPI	GCANNNNNTGC	1 cut(s)	624
BstDEI	CTNAG	3 cut(s)	417, 567, 706
BstDSI	CCRYGG	1 cut(s)	1074
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstKTI	GATC	6 cut(s)	151, 184, 290, 324, 970, 1102
BstMBI	GATC	6 cut(s)	148, 181, 287, 321, 967, 1099
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	3 cut(s)	207, 918, 963
BstSLI	GKGCMC	2 cut(s)	481, 493
BstV2I	GAAGAC	1 cut(s)	1038
BstX2I	RGATCY	3 cut(s)	148, 181, 287
BstYI	RGATCY	3 cut(s)	148, 181, 287
BstZ17I	GTATAC	1 cut(s)	1071
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	466, 565, 648
BtgI	CCRYGG	1 cut(s)	1074
BtrI	CACGTC	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	249
Cfr13I	GGNCC	3 cut(s)	464, 563, 647
Csp6I	GTAC	6 cut(s)	136, 193, 262, 440, 680, 873
CviAII	CATG	6 cut(s)	101, 386, 554, 772, 1058, 1075
CviQI	GTAC	6 cut(s)	136, 193, 262, 440, 680, 873
DdeI	CTNAG	3 cut(s)	417, 567, 706
DpnI	GATC	6 cut(s)	150, 183, 289, 323, 969, 1101
DpnII	GATC	6 cut(s)	148, 181, 287, 321, 967, 1099
DraI	TTTAAA	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	68, 918
EarI	CTCTTC	2 cut(s)	68, 918
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	3 cut(s)	143, 587, 1074
Eco32I	GATATC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	417
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	898
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	3 cut(s)	143, 587, 1074
EcoT22I	ATGCAT	1 cut(s)	1059
ErhI	CCWWGG	3 cut(s)	143, 587, 1074
FaeI	CATG	6 cut(s)	104, 389, 557, 775, 1061, 1078
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	6 cut(s)	100, 385, 553, 771, 1057, 1074
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	349, 1070
FspBI	CTAG	5 cut(s)	234, 588, 615, 903, 1094
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	466, 565, 648
Hin1II	CATG	6 cut(s)	104, 389, 557, 775, 1061, 1078
HincII	GTYRAC	2 cut(s)	124, 350
HindII	GTYRAC	2 cut(s)	124, 350
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	4 cut(s)	241, 422, 659, 853
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	6 cut(s)	124, 350, 440, 479, 491, 1071
Hpy188I	TCNGA	3 cut(s)	658, 673, 897
Hpy188III	TCNNGA	8 cut(s)	155, 276, 357, 419, 861, 903, 948, 1103
Hpy8I	GTNNAC	6 cut(s)	124, 350, 440, 479, 491, 1071
HpyAV	CCTTC	4 cut(s)	363, 449, 660, 696
HpyCH4III	ACNGT	3 cut(s)	547, 635, 1113
HpyCH4IV	ACGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
HpyF3I	CTNAG	3 cut(s)	417, 567, 706
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	6 cut(s)	104, 389, 557, 775, 1061, 1078
Kzo9I	GATC	6 cut(s)	148, 181, 287, 321, 967, 1099
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	2 cut(s)	145, 838
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	5 cut(s)	234, 588, 615, 903, 1094
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	305, 724
MalI	GATC	6 cut(s)	150, 183, 289, 323, 969, 1101
MboI	GATC	6 cut(s)	148, 181, 287, 321, 967, 1099
MboII	GAAGA	8 cut(s)	85, 143, 413, 518, 803, 935, 1043, 1140
MflI	RGATCY	3 cut(s)	148, 181, 287
MhlI	GDGCHC	2 cut(s)	481, 493
MluCI	AATT	5 cut(s)	295, 718, 898, 1042, 1138
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	69, 112, 353, 426, 496, 517, 951
Mph1103I	ATGCAT	1 cut(s)	1059
MseI	TTAA	4 cut(s)	105, 294, 498, 975
MslI	CAYNNNNRTG	1 cut(s)	558
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	230, 254, 624
NcoI	CCATGG	1 cut(s)	1074
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	6 cut(s)	148, 181, 287, 321, 967, 1099
NlaIII	CATG	6 cut(s)	104, 389, 557, 775, 1061, 1078
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	1059
NspI	RCATGY	1 cut(s)	557
PciSI	GCTCTTC	1 cut(s)	918
PcsI	WCGNNNNNNNCGW	2 cut(s)	355, 1086
PfeI	GAWTC	4 cut(s)	241, 422, 659, 853
PflFI	GACNNNGTC	2 cut(s)	311, 545
PflMI	CCANNNNNTGG	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	1137
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	3 cut(s)	464, 563, 647
PsrI	GAACNNNNNNTAC	2 cut(s)	1045, 1077
PsuI	RGATCY	3 cut(s)	148, 181, 287
PsyI	GACNNNGTC	2 cut(s)	311, 545
RsaI	GTAC	6 cut(s)	137, 194, 263, 441, 681, 874
RsaNI	GTAC	6 cut(s)	136, 193, 262, 440, 680, 873
RseI	CAYNNNNRTG	1 cut(s)	558
SalI	GTCGAC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	4 cut(s)	105, 294, 498, 975
Sau3AI	GATC	6 cut(s)	148, 181, 287, 321, 967, 1099
Sau96I	GGNCC	3 cut(s)	464, 563, 647
ScaI	AGTACT	1 cut(s)	874
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	481, 493
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	3 cut(s)	207, 918, 963
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	5 cut(s)	295, 718, 898, 1042, 1138
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	2 cut(s)	697, 937
SspMI	CTAG	5 cut(s)	234, 588, 615, 903, 1094
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	3 cut(s)	143, 587, 1074
TaaI	ACNGT	3 cut(s)	547, 635, 1113
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	349, 1049, 1089
TasI	AATT	5 cut(s)	295, 718, 898, 1042, 1138
TatI	WGTACW	2 cut(s)	439, 872
TfiI	GAWTC	4 cut(s)	241, 422, 659, 853
Tru1I	TTAA	4 cut(s)	105, 294, 498, 975
Tru9I	TTAA	4 cut(s)	105, 294, 498, 975
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	89, 642, 845, 1140
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	2 cut(s)	311, 545
Van91I	CCANNNNNTGG	1 cut(s)	473
VneI	GTGCAC	2 cut(s)	477, 489
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	898
XbaI	TCTAGA	1 cut(s)	902
XceI	RCATGY	1 cut(s)	557
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	2 cut(s)	349, 1070
XspI	CTAG	5 cut(s)	234, 588, 615, 903, 1094
ZrmI	AGTACT	1 cut(s)	874
Zsp2I	ATGCAT	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.