Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Forward (+)

25727126 .. 25730358

Gene Structure 3233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGATGTGGGAATCTGAGAGCGACGGTGGGGTTGGAGTTGGAGGTGGAGGAGGAAGAGAGTATGGTGATGGAGTTTTGAGTTCTAACAAGCATGGCGGCGTCAAGACTGATGGGTTTGAGCTTAGAGGCCAATCTTGGTTTGTTGCTACGGATATCCCCAGCGATCTTCTGGTTAAGATCGGCGACATGAACTTTCACCTTCACAAGTATCCGTTGCTGTCACGTAGCGGGAAGATGAACAGATTGATCTATGAGTCACGAGATCCTGACCCGACGATCCTTATTCTTGATGATCTACCTGGAGGACCAGAAGCGTTTGAGCTTGCATCCAAATTCTGCTATGGAGTTCCCGTGGATCTCACGGCAACTAACATATCAGGATTACGTTGTGCAGCTGAGTATCTTGAGATGACAGAGGATCTTGAGGAAGGGAATCTAATCTTCAAGACAGAAGCTTTTCTCAGCTATGTGGTTCTGTCTTCATGGAGAGACTCCATCTTGGTCCTGAAGAGCTGTGAAAAGCTCTCACCTTGGGCTGAGAATCTTCAGATTGTGAGAAGGTGTAGTGAATCTATCGCTTGGAAAGCTTGTAGTAATCCAAAAGGTATTAGATGGGCTTACACAGGGAAAGCTCCATCTCCATCAACAACAAATTTCGCGGGTTCTAGTCCGAGATGGAACGAATCAAAAGATTCAAGTTTCTATTGTAGTCCGAGTAGGAACACTAATAGCCAGCCTGTTCCTCCAGATTGGTGGTTCGAAGATGTCTCCATCTTAAGAATCGATCATTTCGTTCGTGTAATCACTGCAATCAAGGTGAAAGGTATGAGATTTGAACTACTCGGAGCTGTAATAATGCATTACGCCGGAAAATGGCTTCCGGGTTTGATCAAAGAAGGAGGAGTTGCAATAGCTCCAGCAATGTCCTCCGCCATTGGAGGAGGATTAGGTTTAGGAGGAGACGAAATGAGTATAAGCTGCGGAAGCAACAGCAGCGGAGGAAGCTCCGGACCAGATTGGAAAGGCGGTCTTCATATGGTTCTCTCCGCCGGAAAAACAAACGGACATCAAGATTCCGTCGCTTGTCTCGCCGGACTAGGAATCAGTCCAAAAGACCAACGAATGATCGTCGAATCTTTAATCAGCATAATCCCTCCACAGAAAGATTCCGTCACTTGTAGCTTCCTCCTCCGTCTTCTTAGAGCAGCAAACATGCTCAAAGTAGCTCCGGCGTTGATCACGGAGCTCGAGAAACGCGTAGGGATGCAATTCGAACAAGCGACGCTTCAAGATCTTTTGATTCCTGGTTATAACAATAAAGGAGAGACAATGTACGATGTTGATCTTGTTCAGAGATTGTTGGAACATTTTCTTGTGCAAGAACAGACGGAAGGATCGAGTCCGAGTCGAATGTCGCCGTCGCCGTCGCAGTCTATGTACGCCGATATCCCGAGAGGGAATAACAACAATGGTGGTGGTGGTGGTGGTAATAATCAGAATGCGAAAATGAGAGTGGCGAGGCTTGTGGATAGTTATCTCACCGAAGTTGCTAGAGATCGGAATTTGCCGTTGACAAAGTTTCAGGTTTTGGCTGAGGCGTTACCGGAATCTGCTAGGACTTGTGACGATGGACTATACAGAGCCATTGATTCATATCTCAAGGCGCATCCGACATTATCGGAGCATGAGAGGAAACGGCTATGCCGAGTGATGGATTGTCAAAAACTATCAATGGACGCATGTATGCACGCGGCTCAGAACGAGAGGTTGCCATTGAGAGTGGTGGTTCAAGTTCTCTTCTCGGAGCAAGTCAAGATCAGCAATGCTTTAGCCAACACATCACTCAAGGAGTCAACCACTTTAGGAGAAGCCATGGGTACGTATCAGCCTATGATCCCAAATCGCAAGACATTGATCGAAGCAACACCACAATCGTTTCAGGAAGGATGGGCTGCAGCCAAGAAGGATATTAACACGTTGAAGTTCGAGTTAGAGACGGTGAAGACCAAGTACGTCGAGCTTCAGAACGAGATGGAAGTGATGCAACGACAGTTTGAGAAGACGGGGAAAGTGAAGAACACGCCATCTTCTTCGGCTTGGACCAGCGGTTGGAAGAAGCTAAGTAAACTGACTAAGATGAGTGGACAGGAGAGCCATGACATATCCTCTGGAGGAGAACAAGCTGGTGTTGATCATCCACCCCCCAGGAAACCAAGACGATGGAGGAACTCAATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

746

Amino Acids

81.87

Weight (kDa)

7.18

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	250 - 581	9.7e-97	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1311
AccB7I	CCANNNNNTGG	1 cut(s)	2109
AccII	CGCG	3 cut(s)	659, 1257, 1751
AccIII	TCCGGA	1 cut(s)	1007
AclWI	GGATC	6 cut(s)	257, 271, 363, 426, 1402, 1888
AcsI	RAATTY	3 cut(s)	332, 652, 1561
AcuI	CTGAAG	3 cut(s)	527, 530, 2006
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	4 cut(s)	1334, 1439, 1879, 2012
AfiI	CCNNNNNNNGG	3 cut(s)	873, 1711, 2109
AflII	CTTAAG	1 cut(s)	775
AflIII	ACRYGT	2 cut(s)	1255, 1974
AgsI	TTSAA	6 cut(s)	445, 696, 836, 1289, 1790, 1981
AjnI	CCWGG	3 cut(s)	298, 1303, 2204
Alw21I	GWGCWC	1 cut(s)	1248
Alw26I	GTCTC	6 cut(s)	483, 772, 954, 1091, 1319, 1988
AlwI	GGATC	6 cut(s)	257, 271, 363, 426, 1402, 1888
Ama87I	CYCGRG	2 cut(s)	1247, 1450
Aor13HI	TCCGGA	1 cut(s)	1007
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	6 cut(s)	392, 978, 993, 1205, 1952, 1955
ApoI	RAATTY	3 cut(s)	332, 652, 1561
Asp700I	GAANNNNTTC	2 cut(s)	456, 1368
AspLEI	GCGC	1 cut(s)	1666
AspS9I	GGNCC	4 cut(s)	305, 502, 1010, 2100
AsuC2I	CCSGG	1 cut(s)	882
AsuHPI	GGTGA	6 cut(s)	77, 188, 519, 829, 1531, 2011
AsuII	TTCGAA	2 cut(s)	759, 1272
AvaI	CYCGRG	2 cut(s)	1247, 1450
AvaII	GGWCC	4 cut(s)	305, 502, 1010, 2100
BanII	GRGCYC	1 cut(s)	1248
BarI	GAAGNNNNNNTAC	2 cut(s)	1994, 2026
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	5 cut(s)	471, 1022, 1187, 2009, 2066
Bbv12I	GWGCWC	1 cut(s)	1248
BbvCI	CCTCAGC	1 cut(s)	1593
BbvI	GCAGC	6 cut(s)	404, 965, 1005, 1217, 1939, 1967
BceAI	ACGGC	5 cut(s)	378, 1402, 1408, 1552, 1712
BciT130I	CCWGG	3 cut(s)	300, 1305, 2206
BciVI	GTATCC	1 cut(s)	219
BclI	TGATCA	3 cut(s)	888, 1236, 2191
BcnI	CCSGG	1 cut(s)	882
BcoDI	GTCTC	6 cut(s)	483, 772, 954, 1091, 1319, 1988
BfaI	CTAG	4 cut(s)	666, 1097, 1551, 1614
BfmI	CTRYAG	1 cut(s)	1953
BfrI	CTTAAG	1 cut(s)	775
BfuI	GTATCC	1 cut(s)	219
BglII	AGATCT	1 cut(s)	1291
BisI	GCNGC	8 cut(s)	97, 393, 979, 994, 1206, 1752, 1953, 1956
BlsI	GCNGC	8 cut(s)	98, 394, 980, 995, 1207, 1753, 1954, 1957
Bme1390I	CCNGG	4 cut(s)	300, 882, 1305, 2206
Bme18I	GGWCC	4 cut(s)	305, 502, 1010, 2100
BmeT110I	CYCGRG	2 cut(s)	1247, 1450
BmgT120I	GGNCC	4 cut(s)	305, 502, 1010, 2100
BmrFI	CCNGG	4 cut(s)	300, 882, 1305, 2206
BmsI	GCATC	4 cut(s)	335, 1254, 1675, 2031
BpiI	GAAGAC	5 cut(s)	471, 1022, 1187, 2009, 2066
BpmI	CTGGAG	4 cut(s)	321, 729, 900, 2190
Bpu10I	CCTNAGC	1 cut(s)	1593
Bpu14I	TTCGAA	2 cut(s)	759, 1272
BpuEI	CTTGAG	4 cut(s)	425, 443, 1643, 1829
BpuMI	CCSGG	1 cut(s)	882
Bsa29I	ATCGAT	1 cut(s)	783
BsaAI	YACGTR	2 cut(s)	224, 1881
BsaBI	GATNNNNATC	3 cut(s)	1341, 1533, 1653
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	4 cut(s)	351, 530, 1872, 2204
BsaWI	WCCGGW	2 cut(s)	1007, 1603
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	3 cut(s)	873, 1711, 2109
Bse3DI	GCAATG	2 cut(s)	927, 1828
Bse8I	GATNNNNATC	3 cut(s)	1341, 1533, 1653
BseAI	TCCGGA	1 cut(s)	1007
BseBI	CCWGG	3 cut(s)	300, 1305, 2206
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	4 cut(s)	351, 530, 1872, 2204
BseGI	GGATG	5 cut(s)	326, 1269, 1666, 1952, 2194
BseJI	GATNNNNATC	3 cut(s)	1341, 1533, 1653
BseLI	CCNNNNNNNGG	3 cut(s)	873, 1711, 2109
BseMI	GCAATG	2 cut(s)	927, 1828
BseMII	CTCAG	6 cut(s)	6, 387, 475, 528, 1584, 1769
BseRI	GAGGAG	6 cut(s)	63, 915, 954, 972, 1178, 2187
BseXI	GCAGC	6 cut(s)	404, 965, 1005, 1217, 1939, 1967
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	3 cut(s)	659, 1257, 1751
BshFI	GGCC	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	1248
BsiHKCI	CYCGRG	2 cut(s)	1247, 1450
BsiSI	CCGG	7 cut(s)	867, 881, 1008, 1050, 1092, 1229, 1604
BslI	CCNNNNNNNGG	3 cut(s)	873, 1711, 2109
BsmAI	GTCTC	6 cut(s)	483, 772, 954, 1091, 1319, 1988
BsmBI	CGTCTC	2 cut(s)	954, 1988
BsmI	GAATGC	1 cut(s)	1504
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	2 cut(s)	1247, 1450
Bsp119I	TTCGAA	2 cut(s)	759, 1272
Bsp1286I	GDGCHC	1 cut(s)	1248
Bsp13I	TCCGGA	1 cut(s)	1007
Bsp19I	CCATGG	1 cut(s)	1872
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	6 cut(s)	7, 388, 474, 529, 1585, 1768
BspDI	ATCGAT	1 cut(s)	783
BspEI	TCCGGA	1 cut(s)	1007
BspFNI	CGCG	3 cut(s)	659, 1257, 1751
BspHI	TCATGA	1 cut(s)	2237
BspMAI	CTGCAG	1 cut(s)	1957
BspPI	GGATC	6 cut(s)	257, 271, 363, 426, 1402, 1888
BspQI	GCTCTTC	1 cut(s)	503
BspT104I	TTCGAA	2 cut(s)	759, 1272
BspTI	CTTAAG	1 cut(s)	775
BsrDI	GCAATG	2 cut(s)	927, 1828
BssECI	CCNNGG	4 cut(s)	351, 530, 1872, 2204
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	530, 1872
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	3 cut(s)	300, 1305, 2206
Bst4CI	ACNGT	3 cut(s)	26, 1999, 2052
Bst6I	CTCTTC	3 cut(s)	49, 503, 1802
BstACI	GRCGYC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	775
BstBAI	YACGTR	2 cut(s)	224, 1881
BstBI	TTCGAA	2 cut(s)	759, 1272
BstC8I	GCNNGC	3 cut(s)	324, 734, 1749
BstDSI	CCRYGG	2 cut(s)	351, 1872
BstF5I	GGATG	5 cut(s)	326, 1269, 1666, 1952, 2194
BstFNI	CGCG	3 cut(s)	659, 1257, 1751
BstHHI	GCGC	1 cut(s)	1666
BstMAI	GTCTC	6 cut(s)	483, 772, 954, 1091, 1319, 1988
BstMWI	GCNNNNNNNGC	5 cut(s)	584, 984, 993, 1002, 1088
BstNI	CCWGG	3 cut(s)	300, 1305, 2206
BstNSI	RCATGY	2 cut(s)	1216, 1743
BstSCI	CCNGG	4 cut(s)	298, 880, 1303, 2204
BstSFI	CTRYAG	1 cut(s)	1953
BstSNI	TACGTA	1 cut(s)	1881
BstUI	CGCG	3 cut(s)	659, 1257, 1751
BstV1I	GCAGC	6 cut(s)	404, 965, 1005, 1217, 1939, 1967
BstV2I	GAAGAC	5 cut(s)	471, 1022, 1187, 2009, 2066
BstX2I	RGATCY	4 cut(s)	262, 355, 418, 1291
BstXI	CCANNNNNNTGG	2 cut(s)	753, 2220
BstYI	RGATCY	4 cut(s)	262, 355, 418, 1291
Bsu15I	ATCGAT	1 cut(s)	783
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	783
BtgI	CCRYGG	2 cut(s)	351, 1872
BtsCI	GGATG	5 cut(s)	326, 1269, 1666, 1952, 2194
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	1 cut(s)	804
Cac8I	GCNNGC	3 cut(s)	324, 734, 1749
CciI	TCATGA	1 cut(s)	2237
CfoI	GCGC	1 cut(s)	1666
Cfr13I	GGNCC	4 cut(s)	305, 502, 1010, 2100
ClaI	ATCGAT	1 cut(s)	783
CseI	GACGC	3 cut(s)	88, 1291, 1745
Csp6I	GTAC	4 cut(s)	1333, 1438, 1878, 2011
CspCI	CAANNNNNGTGG	4 cut(s)	1453, 1456, 1488, 1491
CviAII	CATG	9 cut(s)	92, 187, 483, 1213, 1685, 1740, 1873, 2156, 2238
CviQI	GTAC	4 cut(s)	1333, 1438, 1878, 2011
Eam1104I	CTCTTC	3 cut(s)	49, 503, 1802
EarI	CTCTTC	3 cut(s)	49, 503, 1802
EciI	GGCGGA	2 cut(s)	919, 1036
Ecl136II	GAGCTC	1 cut(s)	1246
Eco105I	TACGTA	1 cut(s)	1881
Eco130I	CCWWGG	2 cut(s)	530, 1872
Eco24I	GRGCYC	1 cut(s)	1248
Eco32I	GATATC	2 cut(s)	154, 1447
Eco47I	GGWCC	4 cut(s)	305, 502, 1010, 2100
Eco53kI	GAGCTC	1 cut(s)	1246
Eco57I	CTGAAG	3 cut(s)	527, 530, 2006
Eco88I	CYCGRG	2 cut(s)	1247, 1450
EcoICRI	GAGCTC	1 cut(s)	1246
EcoRII	CCWGG	3 cut(s)	298, 1303, 2204
EcoRV	GATATC	2 cut(s)	154, 1447
EcoT14I	CCWWGG	2 cut(s)	530, 1872
EcoT22I	ATGCAT	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	1248
ErhI	CCWWGG	2 cut(s)	530, 1872
Esp3I	CGTCTC	2 cut(s)	954, 1988
FaeI	CATG	9 cut(s)	95, 190, 486, 1216, 1688, 1743, 1876, 2159, 2241
FalI	AAGNNNNNCTT	4 cut(s)	1014, 1046, 1269, 1301
FatI	CATG	9 cut(s)	91, 186, 482, 1212, 1684, 1739, 1872, 2155, 2237
FauI	CCCGC	2 cut(s)	221, 652
FauNDI	CATATG	1 cut(s)	1035
FbaI	TGATCA	3 cut(s)	888, 1236, 2191
Fnu4HI	GCNGC	8 cut(s)	97, 393, 979, 994, 1206, 1752, 1953, 1956
FokI	GGATG	5 cut(s)	313, 1276, 1653, 1959, 2181
FriOI	GRGCYC	1 cut(s)	1248
Fsp4HI	GCNGC	8 cut(s)	97, 393, 979, 994, 1206, 1752, 1953, 1956
FspBI	CTAG	4 cut(s)	666, 1097, 1551, 1614
GlaI	GCGC	1 cut(s)	1665
GluI	GCNGC	8 cut(s)	97, 393, 979, 994, 1206, 1752, 1953, 1956
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	4 cut(s)	321, 729, 900, 2190
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	7 cut(s)	867, 881, 1008, 1050, 1092, 1229, 1604
HgaI	GACGC	3 cut(s)	88, 1291, 1745
HhaI	GCGC	1 cut(s)	1666
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	9 cut(s)	95, 190, 486, 1216, 1688, 1743, 1876, 2159, 2241
Hin6I	GCGC	1 cut(s)	1664
HinP1I	GCGC	1 cut(s)	1664
HincII	GTYRAC	2 cut(s)	1572, 1854
HindII	GTYRAC	2 cut(s)	1572, 1854
HindIII	AAGCTT	2 cut(s)	453, 585
HpaII	CCGG	7 cut(s)	867, 881, 1008, 1050, 1092, 1229, 1604
HphI	GGTGA	6 cut(s)	77, 188, 519, 829, 1531, 2011
Hpy166II	GTNNAC	4 cut(s)	1572, 1854, 2126, 2144
Hpy8I	GTNNAC	4 cut(s)	1572, 1854, 2126, 2144
Hpy99I	CGWCG	8 cut(s)	26, 277, 1082, 1133, 1285, 1423, 1429, 2018
HpyAV	CCTTC	7 cut(s)	209, 422, 552, 890, 1385, 1937, 1957
HpyCH4III	ACNGT	3 cut(s)	26, 1999, 2052
HpyCH4IV	ACGT	5 cut(s)	223, 385, 1880, 1976, 2013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	584, 984, 993, 1002, 1088
HpySE526I	ACGT	5 cut(s)	223, 385, 1880, 1976, 2013
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	9 cut(s)	95, 190, 486, 1216, 1688, 1743, 1876, 2159, 2241
HspAI	GCGC	1 cut(s)	1664
Kpn2I	TCCGGA	1 cut(s)	1007
Ksp22I	TGATCA	3 cut(s)	888, 1236, 2191
LguI	GCTCTTC	1 cut(s)	503
LmnI	GCTCC	8 cut(s)	637, 845, 919, 1010, 1231, 1243, 1681, 1804
Lsp1109I	GCAGC	6 cut(s)	404, 965, 1005, 1217, 1939, 1967
LweI	GCATC	4 cut(s)	335, 1254, 1675, 2031
MaeI	CTAG	4 cut(s)	666, 1097, 1551, 1614
MaeII	ACGT	5 cut(s)	223, 385, 1880, 1976, 2013
MaeIII	GTNAC	5 cut(s)	219, 255, 1171, 1599, 1622
MflI	RGATCY	4 cut(s)	262, 355, 418, 1291
MhlI	GDGCHC	1 cut(s)	1248
MluCI	AATT	5 cut(s)	332, 652, 1268, 1561, 2232
MluI	ACGCGT	1 cut(s)	1255
MlyI	GAGTC	5 cut(s)	263, 485, 1408, 1414, 1859
MmeI	TCCRAC	5 cut(s)	13, 19, 1341, 1694, 2090
Mph1103I	ATGCAT	1 cut(s)	861
MroI	TCCGGA	1 cut(s)	1007
MroXI	GAANNNNTTC	2 cut(s)	456, 1368
MseI	TTAA	4 cut(s)	174, 776, 1139, 1971
MspA1I	CMGCKG	3 cut(s)	395, 996, 2106
MspCI	CTTAAG	1 cut(s)	775
MspI	CCGG	7 cut(s)	867, 881, 1008, 1050, 1092, 1229, 1604
MspR9I	CCNGG	4 cut(s)	300, 882, 1305, 2206
Mva1269I	GAATGC	1 cut(s)	1504
MvaI	CCWGG	3 cut(s)	300, 1305, 2206
MvnI	CGCG	3 cut(s)	659, 1257, 1751
MwoI	GCNNNNNNNGC	5 cut(s)	584, 984, 993, 1002, 1088
NciI	CCSGG	1 cut(s)	882
NcoI	CCATGG	1 cut(s)	1872
NdeI	CATATG	1 cut(s)	1035
NlaIII	CATG	9 cut(s)	95, 190, 486, 1216, 1688, 1743, 1876, 2159, 2241
NmeAIII	GCCGAG	1 cut(s)	1730
NmuCI	GTSAC	4 cut(s)	219, 255, 1171, 1622
NsiI	ATGCAT	1 cut(s)	861
NspI	RCATGY	2 cut(s)	1216, 1743
NspV	TTCGAA	2 cut(s)	759, 1272
PaeR7I	CTCGAG	1 cut(s)	1247
PagI	TCATGA	1 cut(s)	2237
PciSI	GCTCTTC	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	5 cut(s)	789, 1254, 1394, 1421, 1702
PctI	GAATGC	1 cut(s)	1504
PdmI	GAANNNNTTC	2 cut(s)	456, 1368
PflMI	CCANNNNNTGG	1 cut(s)	2109
PkrI	GCNGC	8 cut(s)	98, 394, 980, 995, 1207, 1753, 1954, 1957
PleI	GAGTC	5 cut(s)	262, 485, 1407, 1413, 1858
PpsI	GAGTC	5 cut(s)	262, 485, 1407, 1413, 1858
Ppu21I	YACGTR	2 cut(s)	224, 1881
PsiI	TTATAA	1 cut(s)	1311
Psp124BI	GAGCTC	1 cut(s)	1248
Psp6I	CCWGG	3 cut(s)	298, 1303, 2204
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	3 cut(s)	298, 1303, 2204
PspPI	GGNCC	4 cut(s)	305, 502, 1010, 2100
PstI	CTGCAG	1 cut(s)	1957
PsuI	RGATCY	4 cut(s)	262, 355, 418, 1291
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	4 cut(s)	1334, 1439, 1879, 2012
RsaNI	GTAC	4 cut(s)	1333, 1438, 1878, 2011
SacI	GAGCTC	1 cut(s)	1248
SapI	GCTCTTC	1 cut(s)	503
SaqAI	TTAA	4 cut(s)	174, 776, 1139, 1971
SatI	GCNGC	8 cut(s)	97, 393, 979, 994, 1206, 1752, 1953, 1956
Sau96I	GGNCC	4 cut(s)	305, 502, 1010, 2100
SchI	GAGTC	5 cut(s)	263, 485, 1408, 1414, 1859
ScrFI	CCNGG	4 cut(s)	300, 882, 1305, 2206
SduI	GDGCHC	1 cut(s)	1248
SfaNI	GCATC	4 cut(s)	335, 1254, 1675, 2031
SfcI	CTRYAG	1 cut(s)	1953
Sfr274I	CTCGAG	1 cut(s)	1247
SfuI	TTCGAA	2 cut(s)	759, 1272
SinI	GGWCC	4 cut(s)	305, 502, 1010, 2100
SlaI	CTCGAG	1 cut(s)	1247
SmlI	CTYRAG	6 cut(s)	404, 422, 775, 1247, 1658, 1844
SmoI	CTYRAG	6 cut(s)	404, 422, 775, 1247, 1658, 1844
SnaBI	TACGTA	1 cut(s)	1881
Sse9I	AATT	5 cut(s)	332, 652, 1268, 1561, 2232
SspMI	CTAG	4 cut(s)	666, 1097, 1551, 1614
SstI	GAGCTC	1 cut(s)	1248
StyD4I	CCNGG	4 cut(s)	298, 880, 1303, 2204
StyI	CCWWGG	2 cut(s)	530, 1872
TaaI	ACNGT	3 cut(s)	26, 1999, 2052
TaiI	ACGT	5 cut(s)	226, 388, 1883, 1979, 2016
TasI	AATT	5 cut(s)	332, 652, 1268, 1561, 2232
TauI	GCSGC	2 cut(s)	99, 1754
Tru1I	TTAA	4 cut(s)	174, 776, 1139, 1971
Tru9I	TTAA	4 cut(s)	174, 776, 1139, 1971
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	4 cut(s)	219, 255, 1171, 1622
TseI	GCWGC	6 cut(s)	392, 978, 993, 1205, 1952, 1955
Tsp45I	GTSAC	4 cut(s)	219, 255, 1171, 1622
TspDTI	ATGAA	6 cut(s)	203, 251, 471, 1022, 1641, 2226
TspGWI	ACGGA	8 cut(s)	164, 201, 1066, 1077, 1159, 1181, 1256, 1403
TspRI	CASTG	1 cut(s)	811
Van91I	CCANNNNNTGG	1 cut(s)	2109
Vha464I	CTTAAG	1 cut(s)	775
VpaK11BI	GGWCC	4 cut(s)	305, 502, 1010, 2100
XapI	RAATTY	3 cut(s)	332, 652, 1561
XceI	RCATGY	2 cut(s)	1216, 1743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	1247
XmnI	GAANNNNTTC	2 cut(s)	456, 1368
XspI	CTAG	4 cut(s)	666, 1097, 1551, 1614
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.