Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Forward (+)

17226328 .. 17229959

Gene Structure 3632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGTGGGAATCAGAGAGTGAGTCAGTTGGAGGAGGCAGAGACTATGGCAATGGAGATTTTAGTTTAAGCAAGCAGAGTGTCAAGAATGATGGGTTTGAGCTAAAAGGGAATTCATGGTATGTTGCAACTGATATCCCAAGTGACCTGTTGGTTAAAGTTGGAGAAGTCAATTTTCACTTGCATAAGTATCCCTTGCTGTCAAGAAGTGGAAAGATGAACAGAATACTGTATGAATTACGAGACCCGGACTTAAGTAAGATGGTTTTGGATGACCTTCCTGGGGGACCTGAGGCCTTTGAGCTAGCTGCAAAATTCTGCTATGGCATTTCTGTCGATCTGACAGCAGCCAACATTTCAGGCCTTAGATGTGCTGCAGAGTTCCTTGAAATGACAGAGGACTTGGAAGAAGGCAACCTTATTTTCAAAACTGAAGCTTTTCTCAGCTATGTGGTTTTATCCTCGTGGAGAGACTCCATAGTGGTGTTGAAAAGTTGTGAGAAGCTCTCTCCATGGGCTGAAAACCTTCAAATTGTTCGGAGATGCAGTGAGTCCATTGCTTGGAAAGCTTGTGCTAATCCAAAAGGCATACGATGGCCATACACTGGTAGTAAGGTAGCTACAAAAGTTTCAAGCCCAAATTGGAGTGACATGAAGGACTCAAGTCCAAGTAGAAACCAGCTGCAAGTTCCTCCTGATTGGTGGTTTGAAGACGCTTCAATTCTTCGGATTGATCATTATGTCAGGGTTATTACTGCAATCAAAGTGAAGGGGATGAGATTTGAACTTATCGGAGCTGCAATAATGCACTATGCATCTAAATGGCTCCCTAATATAATAAGTGATCATGGCTCCGGGTTAACACCTGATGAAGGAAGCAACAGCAGCAATAGTAGTGGAAGCAGTTGGAAGGGTGGACTTCACCTGATCGTGGCGGGAACAAAAGATAATGAGTCTTCAACTGTTCAGGCCAAAGATCAACGGATGATCATCGAGAGCCTAATCAGCATTATTCCACCACAAAGGGACAGTGTCTCATGCAGCTTCCTTCTTCGGCTTCTGAGAATGGCAAACATGTTGAAAGTAGCACCTGCATTGGTGACTGAGTTGGAGAAACGGGTGGGAATGCAATTTGAACAGGCTACATTGGCAGATCTTCTCATTCCATCTTACAACAAAAGTGAAACTATGTATGATGTGGATCTTGTCCAGAGGCTTCTGGAGCACTTTCTTGTTCAAGAACAGACTGAAATGTCAAGTCCAAGCCACCAATCTTTCATTGAAAAGCACTATGAAAGGGGTACAGGGCCAAATGCTAAGATGAGGGTAGCTAAGCTTGTTGATAGTTATCTTACAGAAGTGTCAAGAGATAGAAGCCTTTCCCTAACAAAGTTCCAGGTACTCGCAGAAGCTTTGCCTGAATCTGCAAGGACCTGTGATGATGGACTTTATAGAGCAATCGATTCCTATCTCAAGGCCCATCCGACACTCTCTGAGCACGAAAGGAAGAGGCTATGCCGGGTGATGGATTGCCAAAAACTATCCATTGATGCTTGCATGCATGCTGCACAAAATGAAAGGCTCCCATTAAGAGTGGTGGTGCAAGTTCTTTTCTCTGAGCAAGTCAAAATAAGCAATGCATTAGCTAACAGTGCCCTTAATGAAGCTGGACGAGACTCTAATTATCAGCCAATGGTTCCAAACCGGAAAACACTACTTGAAGGGACCCCGCAATCCTTCCAAGAAGGATGGGCAGCAGCAAAAAAGGACATCAACACTGTAAAGTTTGAACTGGAGAGCGTAAAAGCCAAGTACCTTGATCTCCAAAATTCCATGGAAAACTTGCAGAGACAGTTCGATAAGATGACCTCAAAGCAGAAACATACATCAGCTTGGAGCAGCGGGTGGAAGAAACTCGGCAAACTCACTAAGACTACAATGGTAGAGAATCAGAACGTTGGACCAGACCATCCGACAGATGGTGGTGCAGAGCAGACTAAAAAGATTCCTAGGAGGTGGAGGAATTCCATTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

678

Amino Acids

75.99

Weight (kDa)

7.21

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	232 - 518	2e-100	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1096
AasI	GACNNNNNNGTC	1 cut(s)	1249
Acc36I	ACCTGC	1 cut(s)	1096
AccB7I	CCANNNNNTGG	2 cut(s)	558, 602
AciI	CCGC	3 cut(s)	932, 1727, 1899
AclI	AACGTT	1 cut(s)	1953
AclWI	GGATC	1 cut(s)	1206
AcoI	YGGCCR	1 cut(s)	593
AcsI	RAATTY	4 cut(s)	109, 311, 1825, 2020
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	3 cut(s)	1300, 1398, 1811
AfiI	CCNNNNNNNGG	7 cut(s)	280, 558, 602, 869, 928, 1522, 1976
AflII	CTTAAG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	1071
AjnI	CCWGG	2 cut(s)	277, 1392
Alw21I	GWGCWC	2 cut(s)	1224, 1497
Alw26I	GTCTC	6 cut(s)	33, 234, 462, 1036, 1665, 1840
AlwI	GGATC	1 cut(s)	1206
AoxI	GGCC	6 cut(s)	291, 358, 593, 966, 1304, 1473
ApoI	RAATTY	4 cut(s)	109, 311, 1825, 2020
Asp700I	GAANNNNTTC	3 cut(s)	435, 522, 1375
AspA2I	CCTAGG	1 cut(s)	2006
AspS9I	GGNCC	6 cut(s)	284, 1304, 1428, 1474, 1722, 1958
AsuC2I	CCSGG	3 cut(s)	245, 853, 1517
AsuHPI	GGTGA	3 cut(s)	911, 1108, 1531
AsuNHI	GCTAGC	1 cut(s)	301
AvaII	GGWCC	4 cut(s)	284, 1428, 1722, 1958
AvrII	CCTAGG	1 cut(s)	2006
AxyI	CCTNAGG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	1654
BalI	TGGCCA	1 cut(s)	595
BauI	CACGAG	1 cut(s)	460
BbsI	GAAGAC	2 cut(s)	714, 945
Bbv12I	GWGCWC	2 cut(s)	1224, 1497
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	2 cut(s)	279, 1394
BciVI	GTATCC	1 cut(s)	198
BclI	TGATCA	3 cut(s)	730, 841, 984
BcnI	CCSGG	3 cut(s)	245, 853, 1517
BcoDI	GTCTC	6 cut(s)	33, 234, 462, 1036, 1665, 1840
BfaI	CTAG	2 cut(s)	302, 2007
BfmI	CTRYAG	1 cut(s)	372
BfrI	CTTAAG	1 cut(s)	250
BfuAI	ACCTGC	1 cut(s)	1096
BfuI	GTATCC	1 cut(s)	198
BglII	AGATCT	1 cut(s)	1150
BlnI	CCTAGG	1 cut(s)	2006
BlpI	GCTNAGC	1 cut(s)	1329
Bme1390I	CCNGG	5 cut(s)	245, 279, 853, 1394, 1517
Bme18I	GGWCC	4 cut(s)	284, 1428, 1722, 1958
BmgT120I	GGNCC	6 cut(s)	284, 1304, 1428, 1474, 1722, 1958
BmiI	GGNNCC	7 cut(s)	285, 824, 850, 1580, 1695, 1723, 1724
BmrFI	CCNGG	5 cut(s)	245, 279, 853, 1394, 1517
BmsI	GCATC	3 cut(s)	530, 821, 1537
BmtI	GCTAGC	1 cut(s)	305
BoxI	GACNNNNGTC	1 cut(s)	660
BpiI	GAAGAC	2 cut(s)	714, 945
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	2 cut(s)	1238, 1811
Bpu1102I	GCTNAGC	1 cut(s)	1329
BpuEI	CTTGAG	2 cut(s)	643, 1454
BpuMI	CCSGG	3 cut(s)	245, 853, 1517
Bsa29I	ATCGAT	1 cut(s)	1458
BsaBI	GATNNNNATC	4 cut(s)	986, 1197, 1344, 1464
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	278, 509, 1830, 2006
BsaWI	WCCGGW	1 cut(s)	1701
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	7 cut(s)	280, 558, 602, 869, 928, 1522, 1976
Bse1I	ACTGG	2 cut(s)	607, 1794
Bse21I	CCTNAGG	1 cut(s)	288
Bse3DI	GCAATG	3 cut(s)	55, 552, 1639
Bse8I	GATNNNNATC	4 cut(s)	986, 1197, 1344, 1464
BseBI	CCWGG	2 cut(s)	279, 1394
BseCI	ATCGAT	1 cut(s)	1458
BseDI	CCNNGG	4 cut(s)	278, 509, 1830, 2006
BseGI	GGATG	6 cut(s)	274, 777, 987, 1477, 1751, 1966
BseJI	GATNNNNATC	4 cut(s)	986, 1197, 1344, 1464
BseLI	CCNNNNNNNGG	7 cut(s)	280, 558, 602, 869, 928, 1522, 1976
BseMI	GCAATG	3 cut(s)	55, 552, 1639
BseMII	CTCAG	6 cut(s)	279, 454, 1049, 1092, 1482, 1605
BseNI	ACTGG	2 cut(s)	607, 1794
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	1654
BsgI	GTGCAG	2 cut(s)	1548, 2004
BshFI	GGCC	6 cut(s)	293, 360, 595, 968, 1306, 1475
BshVI	ATCGAT	1 cut(s)	1458
BsiHKAI	GWGCWC	2 cut(s)	1224, 1497
BsiSI	CCGG	4 cut(s)	245, 852, 1516, 1702
BslFI	GGGAC	3 cut(s)	297, 1037, 1735
BslI	CCNNNNNNNGG	7 cut(s)	280, 558, 602, 869, 928, 1522, 1976
BsmAI	GTCTC	6 cut(s)	33, 234, 462, 1036, 1665, 1840
BsmFI	GGGAC	3 cut(s)	297, 1037, 1735
BsmI	GAATGC	1 cut(s)	1128
BsnI	GGCC	6 cut(s)	293, 360, 595, 968, 1306, 1475
Bso31I	GGTCTC	1 cut(s)	234
Bsp1286I	GDGCHC	3 cut(s)	1224, 1497, 1654
Bsp143I	GATC	9 cut(s)	334, 730, 841, 924, 973, 984, 1150, 1198, 1816
Bsp1720I	GCTNAGC	1 cut(s)	1329
Bsp19I	CCATGG	2 cut(s)	509, 1830
BspACI	CCGC	3 cut(s)	932, 1727, 1899
BspANI	GGCC	6 cut(s)	293, 360, 595, 968, 1306, 1475
BspCNI	CTCAG	6 cut(s)	280, 453, 1050, 1093, 1483, 1606
BspDI	ATCGAT	1 cut(s)	1458
BspLI	GGNNCC	7 cut(s)	285, 824, 850, 1580, 1695, 1723, 1724
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	1096
BspOI	GCTAGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	1206
BspTI	CTTAAG	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	234
BsrDI	GCAATG	3 cut(s)	55, 552, 1639
BsrI	ACTGG	2 cut(s)	607, 1794
BssECI	CCNNGG	4 cut(s)	278, 509, 1830, 2006
BssMI	GATC	9 cut(s)	334, 730, 841, 924, 973, 984, 1150, 1198, 1816
BssSI	CACGAG	1 cut(s)	460
BssT1I	CCWWGG	3 cut(s)	509, 1830, 2006
Bst2BI	CACGAG	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	279, 1394
Bst4CI	ACNGT	6 cut(s)	228, 961, 1028, 1649, 1777, 1851
Bst6I	CTCTTC	1 cut(s)	1499
BstAFI	CTTAAG	1 cut(s)	250
BstC8I	GCNNGC	5 cut(s)	71, 303, 1552, 1556, 1560
BstDSI	CCRYGG	2 cut(s)	509, 1830
BstENI	CCTNNNNNAGG	1 cut(s)	867
BstF5I	GGATG	6 cut(s)	274, 777, 987, 1477, 1751, 1966
BstKTI	GATC	9 cut(s)	337, 733, 844, 927, 976, 987, 1153, 1201, 1819
BstMAI	GTCTC	6 cut(s)	33, 234, 462, 1036, 1665, 1840
BstMBI	GATC	9 cut(s)	334, 730, 841, 924, 973, 984, 1150, 1198, 1816
BstMWI	GCNNNNNNNGC	6 cut(s)	563, 882, 1002, 1145, 1219, 1649
BstNI	CCWGG	2 cut(s)	279, 1394
BstNSI	RCATGY	3 cut(s)	1075, 1558, 1562
BstPAI	GACNNNNGTC	1 cut(s)	660
BstSCI	CCNGG	5 cut(s)	243, 277, 851, 1392, 1515
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	1654
BstV2I	GAAGAC	2 cut(s)	714, 945
BstX2I	RGATCY	2 cut(s)	1150, 1198
BstYI	RGATCY	2 cut(s)	1150, 1198
Bsu15I	ATCGAT	1 cut(s)	1458
Bsu36I	CCTNAGG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	6 cut(s)	293, 360, 595, 968, 1306, 1475
BsuTUI	ATCGAT	1 cut(s)	1458
BtgI	CCRYGG	2 cut(s)	509, 1830
BtsCI	GGATG	6 cut(s)	274, 777, 987, 1477, 1751, 1966
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	5 cut(s)	550, 600, 1033, 1654, 1773
BveI	ACCTGC	1 cut(s)	1096
Cac8I	GCNNGC	5 cut(s)	71, 303, 1552, 1556, 1560
Cfr13I	GGNCC	6 cut(s)	284, 1304, 1428, 1474, 1722, 1958
ClaI	ATCGAT	1 cut(s)	1458
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	3 cut(s)	1299, 1397, 1810
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CviAII	CATG	9 cut(s)	114, 510, 649, 845, 1035, 1072, 1555, 1559, 1831
CviQI	GTAC	3 cut(s)	1299, 1397, 1810
DpnI	GATC	9 cut(s)	336, 732, 843, 926, 975, 986, 1152, 1200, 1818
DpnII	GATC	9 cut(s)	334, 730, 841, 924, 973, 984, 1150, 1198, 1816
DrdI	GACNNNNNNGTC	1 cut(s)	1249
DseDI	GACNNNNNNGTC	1 cut(s)	1249
EaeI	YGGCCR	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	1499
EarI	CTCTTC	1 cut(s)	1499
Eco130I	CCWWGG	3 cut(s)	509, 1830, 2006
Eco147I	AGGCCT	2 cut(s)	293, 360
Eco31I	GGTCTC	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	4 cut(s)	284, 1428, 1722, 1958
Eco57I	CTGAAG	1 cut(s)	450
Eco81I	CCTNAGG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	867
EcoO109I	RGGNCCY	3 cut(s)	284, 1428, 1722
EcoRI	GAATTC	2 cut(s)	109, 2020
EcoRII	CCWGG	2 cut(s)	277, 1392
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	509, 1830, 2006
EcoT22I	ATGCAT	3 cut(s)	814, 1560, 1639
ErhI	CCWWGG	3 cut(s)	509, 1830, 2006
FaeI	CATG	9 cut(s)	117, 513, 652, 848, 1038, 1075, 1558, 1562, 1834
FalI	AAGNNNNNCTT	4 cut(s)	176, 208, 399, 431
FaqI	GGGAC	3 cut(s)	297, 1037, 1735
FatI	CATG	9 cut(s)	113, 509, 648, 844, 1034, 1071, 1554, 1558, 1830
FauI	CCCGC	3 cut(s)	925, 1734, 1892
FbaI	TGATCA	3 cut(s)	730, 841, 984
FokI	GGATG	6 cut(s)	281, 784, 994, 1464, 1758, 1953
FspBI	CTAG	2 cut(s)	302, 2007
GsuI	CTGGAG	2 cut(s)	1238, 1811
HaeIII	GGCC	6 cut(s)	293, 360, 595, 968, 1306, 1475
HapII	CCGG	4 cut(s)	245, 852, 1516, 1702
HgaI	GACGC	1 cut(s)	719
Hin1II	CATG	9 cut(s)	117, 513, 652, 848, 1038, 1075, 1558, 1562, 1834
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HindIII	AAGCTT	4 cut(s)	432, 564, 1331, 1407
HpaI	GTTAAC	1 cut(s)	858
HpaII	CCGG	4 cut(s)	245, 852, 1516, 1702
HphI	GGTGA	3 cut(s)	911, 1108, 1531
Hpy166II	GTNNAC	2 cut(s)	858, 914
Hpy188III	TCNNGA	8 cut(s)	82, 201, 692, 991, 1207, 1217, 1235, 1362
Hpy8I	GTNNAC	2 cut(s)	858, 914
HpyCH4III	ACNGT	6 cut(s)	228, 961, 1028, 1649, 1777, 1851
HpyCH4IV	ACGT	1 cut(s)	1953
HpyF10VI	GCNNNNNNNGC	6 cut(s)	563, 882, 1002, 1145, 1219, 1649
HpySE526I	ACGT	1 cut(s)	1953
Hsp92II	CATG	9 cut(s)	117, 513, 652, 848, 1038, 1075, 1558, 1562, 1834
KflI	GGGWCCC	1 cut(s)	1722
Ksp22I	TGATCA	3 cut(s)	730, 841, 984
KspAI	GTTAAC	1 cut(s)	858
Kzo9I	GATC	9 cut(s)	334, 730, 841, 924, 973, 984, 1150, 1198, 1816
LmnI	GCTCC	6 cut(s)	791, 828, 854, 1219, 1584, 1893
LweI	GCATC	3 cut(s)	530, 821, 1537
MaeI	CTAG	2 cut(s)	302, 2007
MaeII	ACGT	1 cut(s)	1953
MaeIII	GTNAC	3 cut(s)	140, 644, 1096
MalI	GATC	9 cut(s)	336, 732, 843, 926, 975, 986, 1152, 1200, 1818
MboI	GATC	9 cut(s)	334, 730, 841, 924, 973, 984, 1150, 1198, 1816
MboII	GAAGA	8 cut(s)	416, 713, 719, 945, 1040, 1145, 1516, 1918
MflI	RGATCY	2 cut(s)	1150, 1198
MhlI	GDGCHC	3 cut(s)	1224, 1497, 1654
MlsI	TGGCCA	1 cut(s)	595
MluNI	TGGCCA	1 cut(s)	595
MlyI	GAGTC	6 cut(s)	29, 464, 557, 650, 959, 1667
MmeI	TCCRAC	7 cut(s)	7, 139, 884, 1086, 1505, 1936, 1994
Mox20I	TGGCCA	1 cut(s)	595
Mph1103I	ATGCAT	3 cut(s)	814, 1560, 1639
MroXI	GAANNNNTTC	3 cut(s)	435, 522, 1375
MscI	TGGCCA	1 cut(s)	595
MseI	TTAA	6 cut(s)	65, 153, 251, 857, 1586, 1656
MslI	CAYNNNNRTG	2 cut(s)	479, 817
Msp20I	TGGCCA	1 cut(s)	595
MspA1I	CMGCKG	2 cut(s)	679, 1899
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	4 cut(s)	245, 852, 1516, 1702
MspR9I	CCNGG	5 cut(s)	245, 279, 853, 1394, 1517
Mva1269I	GAATGC	1 cut(s)	1128
MvaI	CCWGG	2 cut(s)	279, 1394
MwoI	GCNNNNNNNGC	6 cut(s)	563, 882, 1002, 1145, 1219, 1649
NciI	CCSGG	3 cut(s)	245, 853, 1517
NcoI	CCATGG	2 cut(s)	509, 1830
NdeII	GATC	9 cut(s)	334, 730, 841, 924, 973, 984, 1150, 1198, 1816
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	9 cut(s)	117, 513, 652, 848, 1038, 1075, 1558, 1562, 1834
NlaIV	GGNNCC	7 cut(s)	285, 824, 850, 1580, 1695, 1723, 1724
NmeAIII	GCCGAG	1 cut(s)	1893
NmuCI	GTSAC	3 cut(s)	140, 644, 1096
NsiI	ATGCAT	3 cut(s)	814, 1560, 1639
NspI	RCATGY	3 cut(s)	1075, 1558, 1562
PaeI	GCATGC	2 cut(s)	1558, 1562
PaqCI	CACCTGC	1 cut(s)	1096
PceI	AGGCCT	2 cut(s)	293, 360
PciI	ACATGT	1 cut(s)	1071
PctI	GAATGC	1 cut(s)	1128
PdmI	GAANNNNTTC	3 cut(s)	435, 522, 1375
PfeI	GAWTC	5 cut(s)	8, 1418, 1460, 1945, 2002
PflFI	GACNNNGTC	1 cut(s)	1028
PflMI	CCANNNNNTGG	2 cut(s)	558, 602
PleI	GAGTC	6 cut(s)	28, 464, 556, 650, 958, 1667
PpsI	GAGTC	6 cut(s)	28, 464, 556, 650, 958, 1667
PpuMI	RGGWCCY	3 cut(s)	284, 1428, 1722
PscI	ACATGT	1 cut(s)	1071
PshAI	GACNNNNGTC	1 cut(s)	660
Psp1406I	AACGTT	1 cut(s)	1953
Psp5II	RGGWCCY	3 cut(s)	284, 1428, 1722
Psp6I	CCWGG	2 cut(s)	277, 1392
PspGI	CCWGG	2 cut(s)	277, 1392
PspN4I	GGNNCC	7 cut(s)	285, 824, 850, 1580, 1695, 1723, 1724
PspPI	GGNCC	6 cut(s)	284, 1304, 1428, 1474, 1722, 1958
PspPPI	RGGWCCY	3 cut(s)	284, 1428, 1722
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	1150, 1198
PsyI	GACNNNGTC	1 cut(s)	1028
PvuII	CAGCTG	1 cut(s)	679
RsaI	GTAC	3 cut(s)	1300, 1398, 1811
RsaNI	GTAC	3 cut(s)	1299, 1397, 1810
RseI	CAYNNNNRTG	2 cut(s)	479, 817
SaqAI	TTAA	6 cut(s)	65, 153, 251, 857, 1586, 1656
Sau3AI	GATC	9 cut(s)	334, 730, 841, 924, 973, 984, 1150, 1198, 1816
Sau96I	GGNCC	6 cut(s)	284, 1304, 1428, 1474, 1722, 1958
SchI	GAGTC	6 cut(s)	29, 464, 557, 650, 959, 1667
ScrFI	CCNGG	5 cut(s)	245, 279, 853, 1394, 1517
SduI	GDGCHC	3 cut(s)	1224, 1497, 1654
SfaNI	GCATC	3 cut(s)	530, 821, 1537
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	4 cut(s)	284, 1428, 1722, 1958
SmiMI	CAYNNNNRTG	2 cut(s)	479, 817
SmlI	CTYRAG	3 cut(s)	250, 658, 1469
SmoI	CTYRAG	3 cut(s)	250, 658, 1469
SphI	GCATGC	2 cut(s)	1558, 1562
SseBI	AGGCCT	2 cut(s)	293, 360
SsiI	CCGC	3 cut(s)	932, 1727, 1899
SspMI	CTAG	2 cut(s)	302, 2007
StuI	AGGCCT	2 cut(s)	293, 360
StyD4I	CCNGG	5 cut(s)	243, 277, 851, 1392, 1515
StyI	CCWWGG	3 cut(s)	509, 1830, 2006
TaaI	ACNGT	6 cut(s)	228, 961, 1028, 1649, 1777, 1851
TaiI	ACGT	1 cut(s)	1956
TaqI	TCGA	4 cut(s)	333, 990, 1458, 1854
TfiI	GAWTC	5 cut(s)	8, 1418, 1460, 1945, 2002
Tru1I	TTAA	6 cut(s)	65, 153, 251, 857, 1586, 1656
Tru9I	TTAA	6 cut(s)	65, 153, 251, 857, 1586, 1656
TscAI	CASTG	5 cut(s)	550, 607, 1033, 1654, 1780
TseFI	GTSAC	3 cut(s)	140, 644, 1096
Tsp45I	GTSAC	3 cut(s)	140, 644, 1096
TspDTI	ATGAA	9 cut(s)	102, 230, 246, 665, 882, 1264, 1305, 1587, 1674
TspGWI	ACGGA	1 cut(s)	994
TspRI	CASTG	5 cut(s)	550, 607, 1033, 1654, 1780
Tth111I	GACNNNGTC	1 cut(s)	1028
Van91I	CCANNNNNTGG	2 cut(s)	558, 602
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	4 cut(s)	284, 1428, 1722, 1958
XagI	CCTNNNNNAGG	1 cut(s)	867
XapI	RAATTY	4 cut(s)	109, 311, 1825, 2020
XceI	RCATGY	3 cut(s)	1075, 1558, 1562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1973
XmaJI	CCTAGG	1 cut(s)	2006
XmnI	GAANNNNTTC	3 cut(s)	435, 522, 1375
XspI	CTAG	2 cut(s)	302, 2007
Zsp2I	ATGCAT	3 cut(s)	814, 1560, 1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.