Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Forward (+)

31027618 .. 31030683

Gene Structure 3066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG179400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2016 bp

ATGTGGGATTCAGAGACTGAGTCTGTTGGAGGCAGAGATTATGGCAATGGAGTTCTTGGTTTAAGCAAGCAGAGTGTTAAGACTGATGGGTTTGAGCTAAAAGGCAATTCCTGGTATGTTGCAACTGATATCTCAAGTGACCTGTTGGTTCAAGTTGGACAAGTCAATTTTCACTTGCATAAGTATCCCCTGCTGTCAAGGAGTGGAAAGATCAACAGAATCATGTATGAATTACGAGACCCGGACTTGAGTAAGATTGTTTTGGATGACCTTCCTGGTGGACCCGAGTCTTTTGAGCTAGCTGCAAAGTTCTGCTATGGAATTGCTGTTGATCTTACAGCAGCCAATATATCAGGCCTTAGATGTGCTGCAGAGTTCCTTGAAATGACAGAAGACTTGGAAGAAGGCAATCTTATTTTCAAAACCGAAGCATTTCTCAGCTATGTGGTTTTGTCCTCGTGGAGAGACTCCATAGTGGTGTTGAAAAGTTGTGAGAAGCTCTCACCATGGGCTGAAAACCTCCAAATTGTTCGAAGATGTAGCGAGTCCATTGCTTGGAAAGCTTGTGCCAATCCAAAAGGGATACGATGGACATACACCGGTAAGCCTCCAAAAGTTTCAAGCCCAACTTGGAATGACATGAAAGACTCAAGTCCAAGTAGAAACCAGCAAGTTCCTCCTGATTGGTGGTTTGAGGATGCTTCAATTCTTCGCATTGACCATTACGTCAGGGTTATTACTGCTATTAAGGTAAAGGGGATGAGATTTGAACTGATTGGAGCTGCAATAATGCACTATGCAGCTAAATGGCTCCCTGGTATGATAACTGATGGCTCGGGGGCAGCTGATGAAGGAAGCAACGCCAGCAATAGTAATACTGGGAGCAGATGGAAGGGTGGACTCCACCTGATTGTGGCTGGAACTAAAGATGAGCCTTCACCTGTTCAGGCCAAAGATCAACGTATGATCATTGAGAGCCTTATTAGCATTATTCCTCCGCAGAAGGATAGTGTTTCATGCAGCTTCCTTCTTCGACTTTTGAGAATGGCAAACATGTTGAAAGTAGCACCTGCACTGGTTACAGAGTTGGAAAAACGGGTGGGAATGCAGTTCGAACAGGCTACATTGGCAGATCTTCTTATTCCTTCTTTCAATAAGAATGAAACTATGTATGATGTGGATCTTGTTCAGAGGCTTCTGGAGCATTTTCTTGTTCAAGAACAGACTGAAATTTCAAGTCCAAGCCAACAATCTTTTATTGAAAAACACTACGATGGAACTCAAAGGGGTACAGGCCCAAATGCTAAGATGAGGGTAGCTAGGCTTGTTGATAGTTATCTTACAGAGGTGTCAAGAGATAGGAGTCTTTCCCTAACAAAGTTTCAGGTACTGGCAGAAGCTTTGCCTGAATCTGCAAGAATATGTGATGATGGACTTTATAGAGCAATTGATTCATATCTCAAGGCCCATCCAACACTCTCTGAGCATGAAAGGAAGAGGCTCTGCAGGGTGATGGATTGCCAAAAGCTATCAATTGATGCTTGCATGCATGCCGCACAAAATGAAAGGCTCCCATTAAGAGTGGTGGTGCAAGTCCTTTTCTCTGAACAAGTGAAGATAAGCAATGTATTAGCTAACAATGCCCTTAAAGAAGCCGGAGACTCTCACTATCAGCCCATGGTTTCAAATCGGAAAACATTACTTGAAGGGACCCCACAATCCTTCCAAGAAGGATGGGCAGCAGCTAAGAAGGACATCAACACTGTAAAGTTTGAACTGGAGAGCGTAAAAGCGAAGTACCTTGAGCTCCAGAATGACATGGAAAACTTACAGCGACAGTTCGAAAAGATGTCAAAGCAGAAACACACGTCGGCATGGAGCAGCGGGTGGAAGAAACTCAGCAAACTCACTAAGACTACAACTTTTGAGAACCAGAACATTGGGCCTGAGCATCCATCAGCTGCTGCTGAACAGACAACAAAAACACCTAGGAGGTGGAGGAATTCCATTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

671

Amino Acids

75.36

Weight (kDa)

7.57

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	228 - 515	2.9e-99	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1078
AasI	GACNNNNNNGTC	1 cut(s)	725
Acc36I	ACCTGC	1 cut(s)	1078
AccB7I	CCANNNNNTGG	1 cut(s)	555
AciI	CCGC	3 cut(s)	998, 1554, 1884
AclWI	GGATC	1 cut(s)	1188
AcsI	RAATTY	2 cut(s)	1230, 2002
AfaI	GTAC	3 cut(s)	1291, 1389, 1799
AfiI	CCNNNNNNNGG	2 cut(s)	555, 913
AflIII	ACRYGT	2 cut(s)	1053, 1866
AgeI	ACCGGT	1 cut(s)	599
AjiI	CACGTC	1 cut(s)	1869
AjnI	CCWGG	3 cut(s)	110, 274, 814
Alw21I	GWGCWC	1 cut(s)	1809
Alw26I	GTCTC	4 cut(s)	8, 231, 459, 1653
AlwI	GGATC	1 cut(s)	1188
AlwNI	CAGNNNCTG	3 cut(s)	17, 1390, 1964
Ama87I	CYCGRG	2 cut(s)	284, 835
AoxI	GGCC	5 cut(s)	355, 948, 1294, 1464, 1943
ApoI	RAATTY	2 cut(s)	1230, 2002
AsiGI	ACCGGT	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	432
AspA2I	CCTAGG	1 cut(s)	1988
AspS9I	GGNCC	5 cut(s)	281, 1295, 1465, 1710, 1943
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	495, 930, 1522
AsuII	TTCGAA	3 cut(s)	532, 1113, 1842
AsuNHI	GCTAGC	1 cut(s)	298
AvaI	CYCGRG	2 cut(s)	284, 835
AvaII	GGWCC	2 cut(s)	281, 1710
AvrII	CCTAGG	1 cut(s)	1988
BanII	GRGCYC	1 cut(s)	1809
BauI	CACGAG	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	1809
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	3 cut(s)	112, 276, 816
BciVI	GTATCC	2 cut(s)	195, 576
BclI	TGATCA	1 cut(s)	966
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	4 cut(s)	8, 231, 459, 1653
BfaI	CTAG	4 cut(s)	299, 1320, 1989, 2014
BfmI	CTRYAG	2 cut(s)	369, 1504
BfuAI	ACCTGC	1 cut(s)	1078
BfuI	GTATCC	2 cut(s)	195, 576
BglII	AGATCT	1 cut(s)	1132
BlnI	CCTAGG	1 cut(s)	1988
Bme1390I	CCNGG	4 cut(s)	112, 242, 276, 816
Bme18I	GGWCC	2 cut(s)	281, 1710
BmeT110I	CYCGRG	2 cut(s)	284, 835
BmgBI	CACGTC	1 cut(s)	1869
BmgT120I	GGNCC	5 cut(s)	281, 1295, 1465, 1710, 1943
BmiI	GGNNCC	5 cut(s)	283, 812, 1571, 1711, 1712
BmrFI	CCNGG	4 cut(s)	112, 242, 276, 816
BmrI	ACTGGG	1 cut(s)	888
BmsI	GCATC	3 cut(s)	688, 1528, 1960
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	888
BoxI	GACNNNNGTC	2 cut(s)	286, 651
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	3 cut(s)	1220, 1793, 1799
Bpu10I	CCTNAGC	1 cut(s)	1947
Bpu14I	TTCGAA	3 cut(s)	532, 1113, 1842
BpuEI	CTTGAG	5 cut(s)	118, 268, 634, 1445, 1823
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	3 cut(s)	1179, 1335, 1455
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	4 cut(s)	506, 814, 1677, 1988
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	2 cut(s)	555, 913
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	4 cut(s)	883, 1080, 1395, 1782
Bse3DI	GCAATG	3 cut(s)	52, 549, 1630
Bse8I	GATNNNNATC	3 cut(s)	1179, 1335, 1455
BseBI	CCWGG	3 cut(s)	112, 276, 816
BseDI	CCNNGG	4 cut(s)	506, 814, 1677, 1988
BseGI	GGATG	6 cut(s)	271, 703, 765, 1468, 1739, 1951
BseJI	GATNNNNATC	3 cut(s)	1179, 1335, 1455
BseLI	CCNNNNNNNGG	2 cut(s)	555, 913
BseMI	GCAATG	3 cut(s)	52, 549, 1630
BseMII	CTCAG	5 cut(s)	9, 451, 1473, 1912, 1938
BseNI	ACTGG	4 cut(s)	883, 1080, 1395, 1782
BsgI	GTGCAG	1 cut(s)	1056
BshFI	GGCC	5 cut(s)	357, 950, 1296, 1466, 1945
BshTI	ACCGGT	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	1809
BsiHKCI	CYCGRG	2 cut(s)	284, 835
BsiSI	CCGG	3 cut(s)	242, 600, 1656
BslFI	GGGAC	1 cut(s)	1723
BslI	CCNNNNNNNGG	2 cut(s)	555, 913
BsmAI	GTCTC	4 cut(s)	8, 231, 459, 1653
BsmFI	GGGAC	1 cut(s)	1723
BsmI	GAATGC	1 cut(s)	1110
BsnI	GGCC	5 cut(s)	357, 950, 1296, 1466, 1945
Bso31I	GGTCTC	1 cut(s)	231
BsoBI	CYCGRG	2 cut(s)	284, 835
Bsp119I	TTCGAA	3 cut(s)	532, 1113, 1842
Bsp1286I	GDGCHC	1 cut(s)	1809
Bsp143I	GATC	6 cut(s)	210, 331, 955, 966, 1132, 1180
Bsp19I	CCATGG	2 cut(s)	506, 1677
BspACI	CCGC	3 cut(s)	998, 1554, 1884
BspANI	GGCC	5 cut(s)	357, 950, 1296, 1466, 1945
BspCNI	CTCAG	5 cut(s)	10, 450, 1474, 1911, 1939
BspLI	GGNNCC	5 cut(s)	283, 812, 1571, 1711, 1712
BspMAI	CTGCAG	2 cut(s)	373, 1508
BspMI	ACCTGC	1 cut(s)	1078
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	1188
BspT104I	TTCGAA	3 cut(s)	532, 1113, 1842
BspTNI	GGTCTC	1 cut(s)	231
BsrDI	GCAATG	3 cut(s)	52, 549, 1630
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	4 cut(s)	883, 1080, 1395, 1782
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	4 cut(s)	506, 814, 1677, 1988
BssMI	GATC	6 cut(s)	210, 331, 955, 966, 1132, 1180
BssSI	CACGAG	1 cut(s)	457
BssT1I	CCWWGG	3 cut(s)	506, 1677, 1988
Bst2BI	CACGAG	1 cut(s)	457
Bst2UI	CCWGG	3 cut(s)	112, 276, 816
Bst4CI	ACNGT	2 cut(s)	1765, 1839
Bst6I	CTCTTC	1 cut(s)	1490
BstBI	TTCGAA	3 cut(s)	532, 1113, 1842
BstC8I	GCNNGC	6 cut(s)	68, 300, 865, 1543, 1547, 1551
BstDEI	CTNAG	9 cut(s)	18, 359, 437, 1305, 1482, 1746, 1898, 1911, 1947
BstDSI	CCRYGG	2 cut(s)	506, 1677
BstF5I	GGATG	6 cut(s)	271, 703, 765, 1468, 1739, 1951
BstKTI	GATC	6 cut(s)	213, 334, 958, 969, 1135, 1183
BstMAI	GTCTC	4 cut(s)	8, 231, 459, 1653
BstMBI	GATC	6 cut(s)	210, 331, 955, 966, 1132, 1180
BstMWI	GCNNNNNNNGC	6 cut(s)	560, 864, 984, 1127, 1201, 1640
BstNI	CCWGG	3 cut(s)	112, 276, 816
BstNSI	RCATGY	3 cut(s)	1057, 1549, 1553
BstPAI	GACNNNNGTC	2 cut(s)	286, 651
BstSCI	CCNGG	4 cut(s)	110, 240, 274, 814
BstSFI	CTRYAG	2 cut(s)	369, 1504
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	1132, 1180
BstXI	CCANNNNNNTGG	1 cut(s)	1940
BstYI	RGATCY	2 cut(s)	1132, 1180
BsuI	GTATCC	2 cut(s)	195, 576
BsuRI	GGCC	5 cut(s)	357, 950, 1296, 1466, 1945
BtgI	CCRYGG	2 cut(s)	506, 1677
BtrI	CACGTC	1 cut(s)	1869
BtsCI	GGATG	6 cut(s)	271, 703, 765, 1468, 1739, 1951
BtsIMutI	CAGTG	2 cut(s)	1073, 1761
BveI	ACCTGC	1 cut(s)	1078
Cac8I	GCNNGC	6 cut(s)	68, 300, 865, 1543, 1547, 1551
CaiI	CAGNNNCTG	3 cut(s)	17, 1390, 1964
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	5 cut(s)	281, 1295, 1465, 1710, 1943
Csp6I	GTAC	3 cut(s)	1290, 1388, 1798
CspAI	ACCGGT	1 cut(s)	599
CviQI	GTAC	3 cut(s)	1290, 1388, 1798
DdeI	CTNAG	9 cut(s)	18, 359, 437, 1305, 1482, 1746, 1898, 1911, 1947
DpnI	GATC	6 cut(s)	212, 333, 957, 968, 1134, 1182
DpnII	GATC	6 cut(s)	210, 331, 955, 966, 1132, 1180
DrdI	GACNNNNNNGTC	1 cut(s)	725
DseDI	GACNNNNNNGTC	1 cut(s)	725
Eam1104I	CTCTTC	1 cut(s)	1490
EarI	CTCTTC	1 cut(s)	1490
Ecl136II	GAGCTC	1 cut(s)	1807
Eco130I	CCWWGG	3 cut(s)	506, 1677, 1988
Eco147I	AGGCCT	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	1809
Eco31I	GGTCTC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	281, 1710
Eco53kI	GAGCTC	1 cut(s)	1807
Eco88I	CYCGRG	2 cut(s)	284, 835
EcoICRI	GAGCTC	1 cut(s)	1807
EcoO109I	RGGNCCY	1 cut(s)	1710
EcoRI	GAATTC	1 cut(s)	2002
EcoRII	CCWGG	3 cut(s)	110, 274, 814
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	506, 1677, 1988
EcoT22I	ATGCAT	1 cut(s)	1551
EcoT38I	GRGCYC	1 cut(s)	1809
ErhI	CCWWGG	3 cut(s)	506, 1677, 1988
FalI	AAGNNNNNCTT	4 cut(s)	396, 428, 613, 645
FaqI	GGGAC	1 cut(s)	1723
FauI	CCCGC	1 cut(s)	1877
FbaI	TGATCA	1 cut(s)	966
FokI	GGATG	6 cut(s)	278, 710, 772, 1455, 1746, 1938
FriOI	GRGCYC	1 cut(s)	1809
FspBI	CTAG	4 cut(s)	299, 1320, 1989, 2014
GsuI	CTGGAG	3 cut(s)	1220, 1793, 1799
HaeIII	GGCC	5 cut(s)	357, 950, 1296, 1466, 1945
HapII	CCGG	3 cut(s)	242, 600, 1656
HindIII	AAGCTT	2 cut(s)	561, 1398
HpaII	CCGG	3 cut(s)	242, 600, 1656
HphI	GGTGA	3 cut(s)	495, 930, 1522
Hpy166II	GTNNAC	2 cut(s)	281, 899
Hpy188I	TCNGA	5 cut(s)	13, 1191, 1483, 1606, 1692
Hpy188III	TCNNGA	5 cut(s)	680, 1199, 1217, 1353, 1810
Hpy8I	GTNNAC	2 cut(s)	281, 899
Hpy99I	CGWCG	1 cut(s)	1873
HpyCH4III	ACNGT	2 cut(s)	1765, 1839
HpyCH4IV	ACGT	3 cut(s)	726, 961, 1868
HpyF10VI	GCNNNNNNNGC	6 cut(s)	560, 864, 984, 1127, 1201, 1640
HpyF3I	CTNAG	9 cut(s)	18, 359, 437, 1305, 1482, 1746, 1898, 1911, 1947
HpySE526I	ACGT	3 cut(s)	726, 961, 1868
KflI	GGGWCCC	1 cut(s)	1710
Ksp22I	TGATCA	1 cut(s)	966
Kzo9I	GATC	6 cut(s)	210, 331, 955, 966, 1132, 1180
LmnI	GCTCC	7 cut(s)	779, 816, 882, 1201, 1575, 1812, 1878
LweI	GCATC	3 cut(s)	688, 1528, 1960
MaeI	CTAG	4 cut(s)	299, 1320, 1989, 2014
MaeII	ACGT	3 cut(s)	726, 961, 1868
MaeIII	GTNAC	2 cut(s)	137, 1078
MalI	GATC	6 cut(s)	212, 333, 957, 968, 1134, 1182
MboI	GATC	6 cut(s)	210, 331, 955, 966, 1132, 1180
MboII	GAAGA	9 cut(s)	404, 413, 546, 701, 1022, 1127, 1507, 1627, 1903
MfeI	CAATTG	2 cut(s)	1446, 1533
MflI	RGATCY	2 cut(s)	1132, 1180
MhlI	GDGCHC	1 cut(s)	1809
MlyI	GAGTC	8 cut(s)	29, 296, 461, 554, 641, 894, 1372, 1655
MmeI	TCCRAC	4 cut(s)	7, 136, 1068, 1496
Mph1103I	ATGCAT	1 cut(s)	1551
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	5 cut(s)	62, 78, 747, 1577, 1647
MslI	CAYNNNNRTG	2 cut(s)	476, 1272
MspA1I	CMGCKG	3 cut(s)	845, 1884, 1961
MspI	CCGG	3 cut(s)	242, 600, 1656
MspR9I	CCNGG	4 cut(s)	112, 242, 276, 816
MunI	CAATTG	2 cut(s)	1446, 1533
Mva1269I	GAATGC	1 cut(s)	1110
MvaI	CCWGG	3 cut(s)	112, 276, 816
MwoI	GCNNNNNNNGC	6 cut(s)	560, 864, 984, 1127, 1201, 1640
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	2 cut(s)	506, 1677
NdeII	GATC	6 cut(s)	210, 331, 955, 966, 1132, 1180
NheI	GCTAGC	1 cut(s)	298
NlaIV	GGNNCC	5 cut(s)	283, 812, 1571, 1711, 1712
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	1551
NspI	RCATGY	3 cut(s)	1057, 1549, 1553
NspV	TTCGAA	3 cut(s)	532, 1113, 1842
PaeI	GCATGC	2 cut(s)	1549, 1553
PaqCI	CACCTGC	1 cut(s)	1078
PceI	AGGCCT	1 cut(s)	357
PciI	ACATGT	1 cut(s)	1053
PctI	GAATGC	1 cut(s)	1110
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	8, 219, 1409, 1451
PflFI	GACNNNGTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	555
PinAI	ACCGGT	1 cut(s)	599
PleI	GAGTC	8 cut(s)	28, 295, 461, 553, 641, 894, 1371, 1655
PpsI	GAGTC	8 cut(s)	28, 295, 461, 553, 641, 894, 1371, 1655
PpuMI	RGGWCCY	1 cut(s)	1710
PscI	ACATGT	1 cut(s)	1053
PshAI	GACNNNNGTC	2 cut(s)	286, 651
Psp124BI	GAGCTC	1 cut(s)	1809
Psp5II	RGGWCCY	1 cut(s)	1710
Psp6I	CCWGG	3 cut(s)	110, 274, 814
PspGI	CCWGG	3 cut(s)	110, 274, 814
PspN4I	GGNNCC	5 cut(s)	283, 812, 1571, 1711, 1712
PspPI	GGNCC	5 cut(s)	281, 1295, 1465, 1710, 1943
PspPPI	RGGWCCY	1 cut(s)	1710
PstI	CTGCAG	2 cut(s)	373, 1508
PstNI	CAGNNNCTG	3 cut(s)	17, 1390, 1964
PsuI	RGATCY	2 cut(s)	1132, 1180
PsyI	GACNNNGTC	1 cut(s)	19
PvuII	CAGCTG	2 cut(s)	845, 1961
RsaI	GTAC	3 cut(s)	1291, 1389, 1799
RsaNI	GTAC	3 cut(s)	1290, 1388, 1798
RseI	CAYNNNNRTG	2 cut(s)	476, 1272
SacI	GAGCTC	1 cut(s)	1809
SaqAI	TTAA	5 cut(s)	62, 78, 747, 1577, 1647
Sau3AI	GATC	6 cut(s)	210, 331, 955, 966, 1132, 1180
Sau96I	GGNCC	5 cut(s)	281, 1295, 1465, 1710, 1943
SchI	GAGTC	8 cut(s)	29, 296, 461, 554, 641, 894, 1372, 1655
ScrFI	CCNGG	4 cut(s)	112, 242, 276, 816
SduI	GDGCHC	1 cut(s)	1809
SfaNI	GCATC	3 cut(s)	688, 1528, 1960
SfcI	CTRYAG	2 cut(s)	369, 1504
SfuI	TTCGAA	3 cut(s)	532, 1113, 1842
SinI	GGWCC	2 cut(s)	281, 1710
SmiMI	CAYNNNNRTG	2 cut(s)	476, 1272
SmlI	CTYRAG	5 cut(s)	133, 247, 649, 1460, 1802
SmoI	CTYRAG	5 cut(s)	133, 247, 649, 1460, 1802
SphI	GCATGC	2 cut(s)	1549, 1553
SseBI	AGGCCT	1 cut(s)	357
SsiI	CCGC	3 cut(s)	998, 1554, 1884
SspMI	CTAG	4 cut(s)	299, 1320, 1989, 2014
SstI	GAGCTC	1 cut(s)	1809
StuI	AGGCCT	1 cut(s)	357
StyD4I	CCNGG	4 cut(s)	110, 240, 274, 814
StyI	CCWWGG	3 cut(s)	506, 1677, 1988
TaaI	ACNGT	2 cut(s)	1765, 1839
TaiI	ACGT	3 cut(s)	729, 964, 1871
TaqI	TCGA	4 cut(s)	532, 1033, 1113, 1842
TauI	GCSGC	1 cut(s)	1556
TfiI	GAWTC	4 cut(s)	8, 219, 1409, 1451
Tru1I	TTAA	5 cut(s)	62, 78, 747, 1577, 1647
Tru9I	TTAA	5 cut(s)	62, 78, 747, 1577, 1647
TscAI	CASTG	2 cut(s)	1080, 1768
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	8 cut(s)	243, 656, 864, 1005, 1176, 1443, 1503, 1578
TspRI	CASTG	2 cut(s)	1080, 1768
Tth111I	GACNNNGTC	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	281, 1710
XapI	RAATTY	2 cut(s)	1230, 2002
XceI	RCATGY	3 cut(s)	1057, 1549, 1553
XmaJI	CCTAGG	1 cut(s)	1988
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	4 cut(s)	299, 1320, 1989, 2014
Zsp2I	ATGCAT	1 cut(s)	1551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.