Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Forward (+)

8004699 .. 8006141

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0059500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCCGAGATTATTAAGAGATTCAGATTCTGATGATTCCCGTTTGATCGTTAGCAGATTCTTAGATTTAGAAGCAGAAGACTGTCCAGATTCAGAGGATCTGGATAGCCCTTTGATCCACCGGCGGAGATTCTCAGATTCAGATTCTGATGATAACCCTTTGATCCGCCACCCGAGATTCTCAGATTCGGATGATGACGACTGCGTTCCGCTCAGGTTCAAGAGACCTCGTCTTGTAAAAAAACATCGTCAAAGTGAAGAAGGAGAAGAAGAAGAAGAAATTCAAGGAAAAGATAAAGATTATATAGATTTTGAAGCCAAAGAAACAAACGAACACAGGACAGGTGACCGTAACCCTAATATTGTGGTAACCCTAAGTGACCCAGGACTGCTTGATTGCCCAATTTGCTTTGAACCCTTGACCGTTCCTGTCTTCCAGTGTGATGGAAATGGACATTTAGCTTGCTCATCTTGTTGCGCCAAAATCGAAAACAAATGCCCTTCCTGTTCCTGCCCCATTGGATCGAACCGTTGCTCGGCCATCGAGAAGGTCCTGGACTCAAGCACAACTTCTTGCCGAAACAAAAAGTACGGCTGCACTGCTCCGGTGACTTACCACAAGAAAAATGAACATGAAAGGACATGTGCATATTCACCTAGTTGTTCTTGCCCCTATTTGGGTTGCGAGTTTGTCTCATCAGCCATGGAGTTATACCGGCATTACAGCAATAATCATGGGGATTCTGCAATAGAGTTCGTGAGCGACAACTTGTTTTCCATTTCATTGAGGAAGTATGACAAGTTTGTTATTCTTCGAGAACGGGATGTAGGTACCTTATTCATTCTTCACAATAGTGTTGATGATCTAGGAAATGTGGTCAGCCTTAGCTGTATTCAACCAATCTTCAAGGAGGGCTTCATCTATAAACTTGTGGTTAGACACAGAGAAAGTGATTCCCTCAAATTACGGTCAGTGACACAAAGCATTCGAAGCCTGCAGGCATATCCTAGACCTCCCAGTTTCCTTCTAATCCCGCGTGAGTTCTTCTCTTTGGATTCAAATTGCGGTCACCTCGAGATGGATGTGCGCATAAATGTGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

367

Amino Acids

41.72

Weight (kDa)

5.37

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	133 - 169	8.9e-10	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	185 - 247	1.6e-08	Sina, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1088
Acc65I	GGTACC	1 cut(s)	830
AccB1I	GGYRCC	1 cut(s)	830
AccBSI	CCGCTC	1 cut(s)	211
AccII	CGCG	1 cut(s)	1036
AciI	CCGC	5 cut(s)	124, 166, 209, 1034, 1065
AclWI	GGATC	4 cut(s)	105, 109, 157, 529
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	1 cut(s)	279
AfaI	GTAC	2 cut(s)	590, 832
AfiI	CCNNNNNNNGG	4 cut(s)	535, 676, 677, 1078
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	7 cut(s)	220, 284, 314, 413, 896, 907, 1059
AjnI	CCWGG	2 cut(s)	382, 552
AleI	CACNNNNGTG	1 cut(s)	852
AluBI	AGCT	2 cut(s)	461, 888
AluI	AGCT	2 cut(s)	461, 888
Alw26I	GTCTC	2 cut(s)	217, 697
AlwI	GGATC	4 cut(s)	105, 109, 157, 529
AlwNI	CAGNNNCTG	2 cut(s)	29, 146
Ama87I	CYCGRG	2 cut(s)	172, 1073
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	1 cut(s)	594
ApoI	RAATTY	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	279
Asp718I	GGTACC	1 cut(s)	830
AspLEI	GCGC	2 cut(s)	479, 1089
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	4 cut(s)	356, 619, 645, 1061
AsuII	TTCGAA	1 cut(s)	988
AvaI	CYCGRG	2 cut(s)	172, 1073
AvaII	GGWCC	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	84, 424
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	3 cut(s)	437, 548, 1072
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	2 cut(s)	384, 554
BcoDI	GTCTC	2 cut(s)	217, 697
BfaI	CTAG	3 cut(s)	657, 866, 1008
BfmI	CTRYAG	1 cut(s)	995
BisI	GCNGC	1 cut(s)	595
BlsI	GCNGC	1 cut(s)	596
Bme1390I	CCNGG	2 cut(s)	384, 554
Bme18I	GGWCC	1 cut(s)	550
BmeT110I	CYCGRG	2 cut(s)	172, 1073
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	1 cut(s)	832
BmrFI	CCNGG	2 cut(s)	384, 554
BmrI	ACTGGG	1 cut(s)	1011
BmuI	ACTGGG	1 cut(s)	1011
BpiI	GAAGAC	2 cut(s)	84, 424
BplI	GAGNNNNNCTC	4 cut(s)	677, 709, 1031, 1063
Bpu10I	CCTNAGC	2 cut(s)	212, 884
Bpu14I	TTCGAA	1 cut(s)	988
BpuEI	CTTGAG	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	382, 702
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	4 cut(s)	535, 676, 677, 1078
Bse118I	RCCGGY	2 cut(s)	120, 714
Bse1I	ACTGG	2 cut(s)	436, 1017
BseBI	CCWGG	2 cut(s)	384, 554
BseDI	CCNNGG	2 cut(s)	382, 702
BseGI	GGATG	3 cut(s)	196, 829, 1087
BseLI	CCNNNNNNNGG	4 cut(s)	535, 676, 677, 1078
BseMII	CTCAG	3 cut(s)	147, 195, 226
BseNI	ACTGG	2 cut(s)	436, 1017
BseXI	GCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	1036
BshFI	GGCC	1 cut(s)	539
BshNI	GGYRCC	1 cut(s)	830
BsiHKCI	CYCGRG	2 cut(s)	172, 1073
BsiSI	CCGG	3 cut(s)	121, 605, 715
BslI	CCNNNNNNNGG	4 cut(s)	535, 676, 677, 1078
BsmAI	GTCTC	2 cut(s)	217, 697
BsmI	GAATGC	1 cut(s)	984
BsnI	GGCC	1 cut(s)	539
Bso31I	GGTCTC	1 cut(s)	217
BsoBI	CYCGRG	2 cut(s)	172, 1073
Bsp119I	TTCGAA	1 cut(s)	988
Bsp143I	GATC	6 cut(s)	45, 97, 114, 162, 521, 862
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	5 cut(s)	124, 166, 209, 1034, 1065
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	3 cut(s)	146, 194, 225
BspFNI	CGCG	1 cut(s)	1036
BspLI	GGNNCC	1 cut(s)	832
BspMAI	CTGCAG	1 cut(s)	999
BspPI	GGATC	4 cut(s)	105, 109, 157, 529
BspT104I	TTCGAA	1 cut(s)	988
BspT107I	GGYRCC	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	217
BsrBI	CCGCTC	1 cut(s)	211
BsrFI	RCCGGY	2 cut(s)	120, 714
BsrI	ACTGG	2 cut(s)	436, 1017
BssAI	RCCGGY	2 cut(s)	120, 714
BssECI	CCNNGG	2 cut(s)	382, 702
BssMI	GATC	6 cut(s)	45, 97, 114, 162, 521, 862
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	384, 554
Bst4CI	ACNGT	5 cut(s)	83, 350, 424, 530, 969
BstBI	TTCGAA	1 cut(s)	988
BstC8I	GCNNGC	3 cut(s)	463, 995, 999
BstDEI	CTNAG	6 cut(s)	61, 133, 181, 212, 374, 884
BstDSI	CCRYGG	1 cut(s)	702
BstEII	GGTNACC	3 cut(s)	344, 367, 1067
BstF5I	GGATG	3 cut(s)	196, 829, 1087
BstFNI	CGCG	1 cut(s)	1036
BstHHI	GCGC	2 cut(s)	479, 1089
BstKTI	GATC	6 cut(s)	48, 100, 117, 165, 524, 865
BstMAI	GTCTC	2 cut(s)	217, 697
BstMBI	GATC	6 cut(s)	45, 97, 114, 162, 521, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	405, 990
BstNI	CCWGG	2 cut(s)	384, 554
BstNSI	RCATGY	1 cut(s)	645
BstPI	GGTNACC	3 cut(s)	344, 367, 1067
BstSCI	CCNGG	2 cut(s)	382, 552
BstSFI	CTRYAG	1 cut(s)	995
BstUI	CGCG	1 cut(s)	1036
BstV1I	GCAGC	1 cut(s)	581
BstV2I	GAAGAC	2 cut(s)	84, 424
BstX2I	RGATCY	1 cut(s)	97
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	539
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	3 cut(s)	196, 829, 1087
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	443, 597, 978
Cac8I	GCNNGC	3 cut(s)	463, 995, 999
CaiI	CAGNNNCTG	2 cut(s)	29, 146
CfoI	GCGC	2 cut(s)	479, 1089
Cfr10I	RCCGGY	2 cut(s)	120, 714
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	589, 831
CviAII	CATG	4 cut(s)	632, 642, 703, 734
CviQI	GTAC	2 cut(s)	589, 831
DdeI	CTNAG	6 cut(s)	61, 133, 181, 212, 374, 884
DpnI	GATC	6 cut(s)	47, 99, 116, 164, 523, 864
DpnII	GATC	6 cut(s)	45, 97, 114, 162, 521, 862
EaeI	YGGCCR	1 cut(s)	537
EciI	GGCGGA	2 cut(s)	139, 155
Eco130I	CCWWGG	1 cut(s)	702
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	550
Eco88I	CYCGRG	2 cut(s)	172, 1073
Eco91I	GGTNACC	3 cut(s)	344, 367, 1067
EcoO109I	RGGNCCY	1 cut(s)	550
EcoO65I	GGTNACC	3 cut(s)	344, 367, 1067
EcoRII	CCWGG	2 cut(s)	382, 552
EcoT14I	CCWWGG	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	4 cut(s)	635, 645, 706, 737
FalI	AAGNNNNNCTT	4 cut(s)	553, 585, 899, 931
FatI	CATG	4 cut(s)	631, 641, 702, 733
FauI	CCCGC	1 cut(s)	1041
Fnu4HI	GCNGC	1 cut(s)	595
FokI	GGATG	3 cut(s)	203, 836, 1094
Fsp4HI	GCNGC	1 cut(s)	595
FspAI	RTGCGCAY	1 cut(s)	1088
FspBI	CTAG	3 cut(s)	657, 866, 1008
FspI	TGCGCA	1 cut(s)	1088
GlaI	GCGC	2 cut(s)	478, 1088
GluI	GCNGC	1 cut(s)	595
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	3 cut(s)	121, 605, 715
HhaI	GCGC	2 cut(s)	479, 1089
Hin1II	CATG	4 cut(s)	635, 645, 706, 737
Hin6I	GCGC	2 cut(s)	477, 1087
HinP1I	GCGC	2 cut(s)	477, 1087
HpaII	CCGG	3 cut(s)	121, 605, 715
HphI	GGTGA	4 cut(s)	356, 619, 645, 1061
Hpy188I	TCNGA	8 cut(s)	25, 31, 94, 136, 142, 148, 184, 190
Hpy188III	TCNNGA	7 cut(s)	86, 101, 220, 544, 757, 815, 1075
HpyAV	CCTTC	4 cut(s)	254, 510, 541, 1034
HpyCH4III	ACNGT	5 cut(s)	83, 350, 424, 530, 969
HpyCH4V	TGCA	4 cut(s)	597, 647, 746, 997
HpyF10VI	GCNNNNNNNGC	2 cut(s)	405, 990
HpyF3I	CTNAG	6 cut(s)	61, 133, 181, 212, 374, 884
Hsp92II	CATG	4 cut(s)	635, 645, 706, 737
HspAI	GCGC	2 cut(s)	477, 1087
KpnI	GGTACC	1 cut(s)	834
Kzo9I	GATC	6 cut(s)	45, 97, 114, 162, 521, 862
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	1 cut(s)	581
MaeI	CTAG	3 cut(s)	657, 866, 1008
MaeIII	GTNAC	7 cut(s)	344, 350, 367, 377, 607, 973, 1067
MalI	GATC	6 cut(s)	47, 99, 116, 164, 523, 864
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	6 cut(s)	45, 97, 114, 162, 521, 862
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	4 cut(s)	279, 402, 962, 1060
MlyI	GAGTC	1 cut(s)	551
MnlI	CCTC	7 cut(s)	88, 237, 780, 904, 968, 1023, 1082
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	2 cut(s)	852, 1094
MspI	CCGG	3 cut(s)	121, 605, 715
MspR9I	CCNGG	2 cut(s)	384, 554
Mva1269I	GAATGC	1 cut(s)	984
MvaI	CCWGG	2 cut(s)	384, 554
MvnI	CGCG	1 cut(s)	1036
MwoI	GCNNNNNNNGC	2 cut(s)	405, 990
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	6 cut(s)	45, 97, 114, 162, 521, 862
NlaIII	CATG	4 cut(s)	635, 645, 706, 737
NlaIV	GGNNCC	1 cut(s)	832
NmeAIII	GCCGAG	2 cut(s)	30, 515
NmuCI	GTSAC	5 cut(s)	344, 377, 607, 973, 1067
NsbI	TGCGCA	1 cut(s)	1088
NspI	RCATGY	1 cut(s)	645
NspV	TTCGAA	1 cut(s)	988
OliI	CACNNNNGTG	1 cut(s)	852
PaeR7I	CTCGAG	1 cut(s)	1073
PciI	ACATGT	1 cut(s)	641
PctI	GAATGC	1 cut(s)	984
PdmI	GAANNNNTTC	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	552
PkrI	GCNGC	1 cut(s)	596
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
PpuMI	RGGWCCY	1 cut(s)	550
PscI	ACATGT	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	382, 552
PspEI	GGTNACC	3 cut(s)	344, 367, 1067
PspGI	CCWGG	2 cut(s)	382, 552
PspN4I	GGNNCC	1 cut(s)	832
PspPI	GGNCC	1 cut(s)	550
PspPPI	RGGWCCY	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	999
PstNI	CAGNNNCTG	2 cut(s)	29, 146
PsuI	RGATCY	1 cut(s)	97
PsyI	GACNNNGTC	1 cut(s)	228
RsaI	GTAC	2 cut(s)	590, 832
RsaNI	GTAC	2 cut(s)	589, 831
RseI	CAYNNNNRTG	2 cut(s)	852, 1094
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	1 cut(s)	595
Sau3AI	GATC	6 cut(s)	45, 97, 114, 162, 521, 862
Sau96I	GGNCC	1 cut(s)	550
SbfI	CCTGCAGG	1 cut(s)	999
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	384, 554
SdaI	CCTGCAGG	1 cut(s)	999
SfcI	CTRYAG	1 cut(s)	995
Sfr274I	CTCGAG	1 cut(s)	1073
SfuI	TTCGAA	1 cut(s)	988
SgrAI	CRCCGGYG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	550
SlaI	CTCGAG	1 cut(s)	1073
SmiMI	CAYNNNNRTG	2 cut(s)	852, 1094
SmlI	CTYRAG	2 cut(s)	559, 1073
SmoI	CTYRAG	2 cut(s)	559, 1073
Sse8387I	CCTGCAGG	1 cut(s)	999
Sse9I	AATT	4 cut(s)	279, 402, 962, 1060
SsiI	CCGC	5 cut(s)	124, 166, 209, 1034, 1065
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	3 cut(s)	657, 866, 1008
StyD4I	CCNGG	2 cut(s)	382, 552
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	5 cut(s)	83, 350, 424, 530, 969
TaqI	TCGA	6 cut(s)	486, 524, 543, 814, 988, 1074
TasI	AATT	4 cut(s)	279, 402, 962, 1060
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	3 cut(s)	443, 604, 978
TseFI	GTSAC	5 cut(s)	344, 377, 607, 973, 1067
TseI	GCWGC	1 cut(s)	594
Tsp45I	GTSAC	5 cut(s)	344, 377, 607, 973, 1067
TspDTI	ATGAA	5 cut(s)	642, 648, 771, 829, 907
TspRI	CASTG	3 cut(s)	443, 604, 978
Tth111I	GACNNNGTC	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	1 cut(s)	645
XhoI	CTCGAG	1 cut(s)	1073
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	3 cut(s)	657, 866, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.