Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Reverse (-)

12593041 .. 12602463

Gene Structure 9423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCATCAAACAATCGAAAGCTGAAGGGAAAAAGATACTTAAGAATGAATGATGGACCAAATGATAATGATCAACAAAATGTGCAGAATGCATTGGATGGTCACACTACTGCTACCTTTTTTGATAACAATATCAATCGTCGAATCAAATCAAGAAGATGGATAGAAGTGTCTGAAGCGGTGGTTGAGGATAGCCGGGTAAAGCAACACAATGATGATGGTATCAATGTAATACAACATCGAGATAAGCGAGTTAGAAATAATCGAGAGACGTCAAATGTGACAATGAAGCGAACTACTGTTACTGAGGCTAATTCGAATGGTAATGGTCAGGGTGGAACTGATGTGGGATTGATTGACATTGAGAAAGAAAGAAAGAGAGGTGAGGAACAATGTCCTCCCGATTTGGACAGTGCCAGGAATGAACTGGACATAGCCAGAAAATACCACAAATGGAGCAAAAGAAACACTACAAAGGTGAGAGAAGAGCAGCAGATTCTTGAGGATGCTGAAAAGGATGAAGGAGAAAGGACCTCCCCCCAACTCTTAGGCCTTCAATCTAGATCTTCAGGGAGGCCCTATCCAAATCAAGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

199

Amino Acids

22.84

Weight (kDa)

9.21

Isoelectric Point (pI)

62.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	275
AciI	CCGC	1 cut(s)	179
AcuI	CTGAAG	3 cut(s)	44, 195, 552
AcyI	GRCGYC	1 cut(s)	272
AflII	CTTAAG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	416
AjuI	GAANNNNNNNTTGG	1 cut(s)	577
AluBI	AGCT	2 cut(s)	22, 593
AluI	AGCT	2 cut(s)	22, 593
Alw26I	GTCTC	1 cut(s)	263
AoxI	GGCC	2 cut(s)	550, 575
ApeKI	GCWGC	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	56, 531, 576
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	395, 490
AsuII	TTCGAA	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	56, 531
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	4 cut(s)	47, 92, 153, 212
BciT130I	CCWGG	1 cut(s)	418
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	561
BfrI	CTTAAG	1 cut(s)	40
BglII	AGATCT	1 cut(s)	563
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme1390I	CCNGG	2 cut(s)	197, 418
Bme18I	GGWCC	2 cut(s)	56, 531
BmgT120I	GGNCC	3 cut(s)	56, 531, 576
BmrFI	CCNGG	2 cut(s)	197, 418
BmsI	GCATC	2 cut(s)	14, 496
Bpu14I	TTCGAA	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	418
BseGI	GGATG	3 cut(s)	103, 511, 523
BseJI	GATNNNNATC	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	552, 577
BsiSI	CCGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	263
BsmBI	CGTCTC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	552, 577
Bsp119I	TTCGAA	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	70, 563
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	2 cut(s)	552, 577
BspCNI	CTCAG	1 cut(s)	298
BspQI	GCTCTTC	1 cut(s)	480
BspT104I	TTCGAA	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	432
BssMI	GATC	2 cut(s)	70, 563
BssNI	GRCGYC	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	301, 413
Bst6I	CTCTTC	1 cut(s)	480
BstACI	GRCGYC	1 cut(s)	272
BstAFI	CTTAAG	1 cut(s)	40
BstBI	TTCGAA	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	306, 547
BstF5I	GGATG	3 cut(s)	103, 511, 523
BstKTI	GATC	2 cut(s)	73, 566
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	2 cut(s)	70, 563
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	2 cut(s)	195, 416
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	552, 577
BtsCI	GGATG	3 cut(s)	103, 511, 523
BtsIMutI	CAGTG	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	56, 531, 576
CviJI	RGCY	7 cut(s)	22, 195, 311, 437, 552, 577, 593
CviKI_1	RGCY	7 cut(s)	22, 195, 311, 437, 552, 577, 593
DdeI	CTNAG	2 cut(s)	306, 547
DpnI	GATC	2 cut(s)	72, 565
DpnII	GATC	2 cut(s)	70, 563
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco147I	AGGCCT	1 cut(s)	552
Eco47I	GGWCC	2 cut(s)	56, 531
Eco57I	CTGAAG	3 cut(s)	44, 195, 552
EcoO109I	RGGNCCY	2 cut(s)	531, 576
EcoRII	CCWGG	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	263
FaiI	YATR	1 cut(s)	434
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	3 cut(s)	110, 518, 530
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	552, 577
HapII	CCGG	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	2 cut(s)	144, 496
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	2 cut(s)	395, 490
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	6 cut(s)	153, 242, 266, 401, 500, 561
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	19, 515, 563
HpyCH4III	ACNGT	2 cut(s)	301, 413
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	85, 92
HpyF3I	CTNAG	2 cut(s)	306, 547
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	70, 563
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	456
LpnPI	CCDG	7 cut(s)	209, 317, 403, 413, 430, 451, 555
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	2 cut(s)	14, 496
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	3 cut(s)	101, 280, 301
MalI	GATC	2 cut(s)	72, 565
MboI	GATC	2 cut(s)	70, 563
MboII	GAAGA	3 cut(s)	168, 497, 558
MflI	RGATCY	1 cut(s)	563
MluCI	AATT	1 cut(s)	313
MnlI	CCTC	8 cut(s)	181, 301, 374, 379, 408, 496, 544, 567
Mph1103I	ATGCAT	1 cut(s)	94
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	213
MspCI	CTTAAG	1 cut(s)	40
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	197, 418
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	418
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	70, 563
NmuCI	GTSAC	2 cut(s)	101, 280
NsiI	ATGCAT	1 cut(s)	94
NspV	TTCGAA	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	144, 496
PkrI	GCNGC	1 cut(s)	492
PpuMI	RGGWCCY	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspPI	GGNCC	3 cut(s)	56, 531, 576
PspPPI	RGGWCCY	1 cut(s)	531
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PsuI	RGATCY	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	2 cut(s)	70, 563
Sau96I	GGNCC	3 cut(s)	56, 531, 576
ScrFI	CCNGG	2 cut(s)	197, 418
SetI	ASST	7 cut(s)	24, 119, 275, 385, 480, 536, 595
SfaNI	GCATC	2 cut(s)	14, 496
SfuI	TTCGAA	1 cut(s)	317
SinI	GGWCC	2 cut(s)	56, 531
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	40, 500
SmoI	CTYRAG	2 cut(s)	40, 500
Sse9I	AATT	1 cut(s)	313
SseBI	AGGCCT	1 cut(s)	552
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	195, 416
TaaI	ACNGT	2 cut(s)	301, 413
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	5 cut(s)	16, 142, 241, 265, 317
TasI	AATT	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	144, 496
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	2 cut(s)	101, 280
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	2 cut(s)	101, 280
TspDTI	ATGAA	4 cut(s)	62, 302, 438, 534
TspRI	CASTG	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	56, 531
XbaI	TCTAGA	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XspI	CTAG	1 cut(s)	561
ZraI	GACGTC	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.