Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Reverse (-)

12610489 .. 12612186

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0158600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGACCCATTATTCTTTCCTCTATTCCTTCACATTCGTGCCTAGCTTGTATGAAGTCTTCATTCTACATGAGTGTTTGCTTCAATACCAAAACCAGCACCGTCTCAATCTCCCTTTGTTTCAAACTTGTCGCAAGGCAATGGCTGCCGTTGTCAATCTCTCCAGCATTGCACCGAGTCAGAGAATGTGCTTCAAACCTATGGCCGGACCGGCCATTGGTTCCTTGACGATCAAAAGGACATGCAAGTTTGTTCGGCAGAACAGAGCTGACGCAAAGCCGCATAGCATCTATGTCAAAAGGAAGGCAGAAAAAAACCTCTCCAACATCAGCGGGCTCTTTCCTATCATGGCTGCAAGGGGAATTTCAACTTTTTCTTCGGGATCGCTCTCCCCATCCGACACGATCAATGACTTCTACAAATGCATCAATGAGAAGAACTTGAAGCAACTAGGTCACTACATCTCAAGTGAGTGTTGCATAGAGGAATGCTCCTTTAGCACACCATTACAAGGCAAAAAGGTAATAATGAACTTCTTTGAAGAGCTAACTGCAGCCATGGGCAATAATATAAAGTTCAGCATACAACATGTGTGCGAAGGAGGTGATCAGCTTACAGCAGCAGCAAACTGGCACATGGAATGGAAAGACAAACAGATCCCATTCACCAGAGGCTGCAGCTTCTTTGAATACTCAAAAGAAGGAGAAAAACTAATTATCAAGAAAGCACAGATTGTTATTGAATCACCGATCAAACCAGGACACCTAGTACTGAGTCTTTTGAAGGCAGTGACCTCTCTATTTGATGGTTTCCCAAGAGCTACTGAATGGTTCCTAAAAAGTCCTCATATTGTTTTCCAATGCATATGGAGGATATACAAAATGATGTTTGCACCAATTATAGAAGGCTACATAGGGCTTTGGAACATCGCAATTCGATTGCTCAGCTATGTATACAACATTTTGCTTTACATTTCAAACATATTTTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

330

Amino Acids

37.74

Weight (kDa)

9.26

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SnoaL_2	PF12680	136 - 233	5.5e-07	SnoaL-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	951
AciI	CCGC	2 cut(s)	278, 330
AclWI	GGATC	2 cut(s)	388, 649
AcoI	YGGCCR	2 cut(s)	201, 210
AcsI	RAATTY	1 cut(s)	360
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	3 cut(s)	203, 215, 509
AflIII	ACRYGT	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	754
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	7 cut(s)	45, 266, 544, 610, 678, 818, 945
AluI	AGCT	7 cut(s)	45, 266, 544, 610, 678, 818, 945
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	388, 649
AlwNI	CAGNNNCTG	1 cut(s)	672
AoxI	GGCC	2 cut(s)	201, 210
ApeKI	GCWGC	7 cut(s)	143, 350, 551, 617, 620, 672, 675
ApoI	RAATTY	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	614, 655, 735
AvaII	GGWCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	336
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbsI	GAAGAC	1 cut(s)	49
BbvI	GCAGC	7 cut(s)	130, 337, 563, 629, 632, 659, 687
BccI	CCATC	2 cut(s)	400, 797
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	756
BclI	TGATCA	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	42, 449, 764
BfmI	CTRYAG	2 cut(s)	549, 673
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	8 cut(s)	144, 278, 351, 552, 618, 621, 673, 676
BlpI	GCTNAGC	1 cut(s)	941
BlsI	GCNGC	8 cut(s)	145, 279, 352, 553, 619, 622, 674, 677
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	1 cut(s)	756
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	220, 830
BmrFI	CCNGG	1 cut(s)	756
BmsI	GCATC	2 cut(s)	294, 432
BpiI	GAAGAC	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	1 cut(s)	145
Bpu1102I	GCTNAGC	1 cut(s)	941
BpuEI	CTTGAG	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 215, 509
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	632
Bse3DI	GCAATG	2 cut(s)	144, 165
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	1 cut(s)	392
BseLI	CCNNNNNNNGG	3 cut(s)	203, 215, 509
BseMI	GCAATG	2 cut(s)	144, 165
BseMII	CTCAG	2 cut(s)	761, 955
BseNI	ACTGG	1 cut(s)	632
BseXI	GCAGC	7 cut(s)	130, 337, 563, 629, 632, 659, 687
BshFI	GGCC	2 cut(s)	203, 212
BsiSI	CCGG	2 cut(s)	204, 209
BslI	CCNNNNNNNGG	3 cut(s)	203, 215, 509
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	203, 212
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	228, 380, 402, 604, 654, 747
Bsp1720I	GCTNAGC	1 cut(s)	941
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	2 cut(s)	278, 330
BspANI	GGCC	2 cut(s)	203, 212
BspCNI	CTCAG	2 cut(s)	762, 954
BspLI	GGNNCC	2 cut(s)	220, 830
BspMAI	CTGCAG	2 cut(s)	553, 677
BspPI	GGATC	2 cut(s)	388, 649
BspQI	GCTCTTC	1 cut(s)	534
BsrDI	GCAATG	2 cut(s)	144, 165
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	632
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	6 cut(s)	228, 380, 402, 604, 654, 747
BssNAI	GTATAC	1 cut(s)	952
BssT1I	CCWWGG	1 cut(s)	555
Bst1107I	GTATAC	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	770, 941
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	1 cut(s)	392
BstKTI	GATC	6 cut(s)	231, 383, 405, 607, 657, 750
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	6 cut(s)	228, 380, 402, 604, 654, 747
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 209, 495
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	2 cut(s)	243, 590
BstSCI	CCNGG	1 cut(s)	754
BstSFI	CTRYAG	2 cut(s)	549, 673
BstV1I	GCAGC	7 cut(s)	130, 337, 563, 629, 632, 659, 687
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	654
BstZ17I	GTATAC	1 cut(s)	952
BsuRI	GGCC	2 cut(s)	203, 212
BtgI	CCRYGG	1 cut(s)	555
BtgZI	GCGATG	1 cut(s)	910
BtsCI	GGATG	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	1 cut(s)	792
Cac8I	GCNNGC	1 cut(s)	332
CaiI	CAGNNNCTG	1 cut(s)	672
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	206
CpoI	CGGWCCG	1 cut(s)	206
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	767
CspI	CGGWCCG	1 cut(s)	206
CviAII	CATG	6 cut(s)	68, 240, 346, 556, 587, 634
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	2 cut(s)	770, 941
DpnI	GATC	6 cut(s)	230, 382, 404, 606, 656, 749
DpnII	GATC	6 cut(s)	228, 380, 402, 604, 654, 747
EaeI	YGGCCR	2 cut(s)	201, 210
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	555
EcoT22I	ATGCAT	2 cut(s)	425, 863
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	6 cut(s)	71, 243, 349, 559, 590, 637
FatI	CATG	6 cut(s)	67, 239, 345, 555, 586, 633
FauI	CCCGC	1 cut(s)	323
FauNDI	CATATG	1 cut(s)	863
FbaI	TGATCA	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	951
Fnu4HI	GCNGC	8 cut(s)	144, 278, 351, 552, 618, 621, 673, 676
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	8 cut(s)	144, 278, 351, 552, 618, 621, 673, 676
FspBI	CTAG	3 cut(s)	42, 449, 764
GluI	GCNGC	8 cut(s)	144, 278, 351, 552, 618, 621, 673, 676
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	203, 212
HapII	CCGG	2 cut(s)	204, 209
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	6 cut(s)	71, 243, 349, 559, 590, 637
HinfI	GANTC	3 cut(s)	175, 740, 772
HpaII	CCGG	2 cut(s)	204, 209
HphI	GGTGA	3 cut(s)	614, 655, 735
Hpy166II	GTNNAC	1 cut(s)	952
Hpy188I	TCNGA	2 cut(s)	180, 397
Hpy188III	TCNNGA	2 cut(s)	378, 718
Hpy8I	GTNNAC	1 cut(s)	952
HpyAV	CCTTC	6 cut(s)	37, 295, 590, 692, 775, 896
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	9 cut(s)	170, 243, 353, 423, 477, 551, 675, 861, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 209, 495
HpyF3I	CTNAG	2 cut(s)	770, 941
Hsp92II	CATG	6 cut(s)	71, 243, 349, 559, 590, 637
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	6 cut(s)	228, 380, 402, 604, 654, 747
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	494
LpnPI	CCDG	8 cut(s)	107, 175, 217, 222, 613, 679, 741, 768
Lsp1109I	GCAGC	7 cut(s)	130, 337, 563, 629, 632, 659, 687
LweI	GCATC	2 cut(s)	294, 432
MaeI	CTAG	3 cut(s)	42, 449, 764
MaeIII	GTNAC	2 cut(s)	452, 787
MalI	GATC	6 cut(s)	230, 382, 404, 606, 656, 749
MboI	GATC	6 cut(s)	228, 380, 402, 604, 654, 747
MboII	GAAGA	4 cut(s)	49, 366, 445, 551
MflI	RGATCY	1 cut(s)	654
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	4 cut(s)	360, 711, 894, 930
MlyI	GAGTC	2 cut(s)	184, 781
MmeI	TCCRAC	2 cut(s)	345, 420
MnlI	CCTC	8 cut(s)	29, 326, 475, 593, 662, 802, 852, 861
Mph1103I	ATGCAT	2 cut(s)	425, 863
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	2 cut(s)	204, 209
MspR9I	CCNGG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	3 cut(s)	143, 209, 495
NcoI	CCATGG	1 cut(s)	555
NdeI	CATATG	1 cut(s)	863
NdeII	GATC	6 cut(s)	228, 380, 402, 604, 654, 747
NlaIII	CATG	6 cut(s)	71, 243, 349, 559, 590, 637
NlaIV	GGNNCC	2 cut(s)	220, 830
NmuCI	GTSAC	2 cut(s)	452, 787
NsiI	ATGCAT	2 cut(s)	425, 863
NspI	RCATGY	2 cut(s)	243, 590
OliI	CACNNNNGTG	1 cut(s)	35
PciI	ACATGT	1 cut(s)	586
PciSI	GCTCTTC	1 cut(s)	534
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	740
PkrI	GCNGC	8 cut(s)	145, 279, 352, 553, 619, 622, 674, 677
PleI	GAGTC	2 cut(s)	183, 780
PpsI	GAGTC	2 cut(s)	183, 780
PscI	ACATGT	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	2 cut(s)	220, 830
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	2 cut(s)	553, 677
PstNI	CAGNNNCTG	1 cut(s)	672
PsuI	RGATCY	1 cut(s)	654
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
RseI	CAYNNNNRTG	1 cut(s)	35
Rsr2I	CGGWCCG	1 cut(s)	206
RsrII	CGGWCCG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	534
SatI	GCNGC	8 cut(s)	144, 278, 351, 552, 618, 621, 673, 676
Sau3AI	GATC	6 cut(s)	228, 380, 402, 604, 654, 747
Sau96I	GGNCC	1 cut(s)	206
ScaI	AGTACT	1 cut(s)	768
SchI	GAGTC	2 cut(s)	184, 781
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	294, 432
SfcI	CTRYAG	2 cut(s)	549, 673
SfiI	GGCCNNNNNGGCC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	4 cut(s)	360, 711, 894, 930
SsiI	CCGC	2 cut(s)	278, 330
SspMI	CTAG	3 cut(s)	42, 449, 764
StyD4I	CCNGG	1 cut(s)	754
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	934
TasI	AATT	4 cut(s)	360, 711, 894, 930
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	740
TscAI	CASTG	1 cut(s)	792
TseFI	GTSAC	2 cut(s)	452, 787
TseI	GCWGC	7 cut(s)	143, 350, 551, 617, 620, 672, 675
Tsp45I	GTSAC	2 cut(s)	452, 787
TspDTI	ATGAA	3 cut(s)	49, 66, 542
TspRI	CASTG	1 cut(s)	792
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	2 cut(s)	243, 590
XmiI	GTMKAC	1 cut(s)	951
XspI	CTAG	3 cut(s)	42, 449, 764
ZrmI	AGTACT	1 cut(s)	768
Zsp2I	ATGCAT	2 cut(s)	425, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.