Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Forward (+)

7947993 .. 7951423

Gene Structure 3431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1047100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGTGGGATTCTGAGACTGAGTCGGTTGGAGGGAGAGATTACAGGAATGGAGTTCTCTGTTCATCCAAGCACAATGTTAAGACTGATGGCTTTGAGCTCAAGGGCAACTCTTGGTATGTAGCAACTGATATCCCAAGTGACCTGCTAGTTCTAGTTGGGGATGTAAATTTTTACTTGCACAAGTATCCCCTGCTTTCAAGGAGTGGAAAGATCAACAGAGTCATGTATGAATTACGCGACCCGGACCTGAGTAAGATGGGTTTGGATGATCTTCCTGGTGGACCACAGGCCTTCGAGCTAGCTGCGAAATTCTGCTATGGAATTGCTGTTGATCTAACAGCAGCAAATATTTCAGGCTTGAGATGTGCTGCAGAGTACCTTGAAATGACAGAGGACTTGGAAGAAGGCAACCTTATCTTCAAAACTGAGGCTTTTCTTAGCTATGTGGTTTTATCCTCATGGAGAGACTCCATTGTGGTGTTGAAAAGCTGTGAGAAGTTGTCGCCATGGGCTGAAAACCTTCAAATTGTCCGAAGATGCAGCGAGTCTATTGCTTGGAAAGCTTGTTCCAATCCAAAGGGGATAAGATGGGCATACACTAGAAAGCCAACAAAAGTTGCTAGCCCAAACTGGGGTGACATGAAGGACTCAAGTCCAAGTAGAAGCCAGCAGGTCCCTCCTGATTGGTGGTTTGAAGATGTTTCAATTCTAAGGATTGATCACTTTGTCAGAGTTATTACCGCAATTAAGGTGAAGGGGATGAGATTTGAACTGATTGGAGCTGCAATGATGCATTACGCATCTAAATGGCTTCCAGGTTTGATCAATGAAGGCACAGGTGCAGCAGATGAAGGAAGCAACAGCAGCAATAGTACAAGTAATAGTGGCGGTAGTTGGAACGGTGGACTTCATATGATTCTGGCAGGAAATAAAGATGAGTCTTCAAGTGTTCAGGCCAAAGATCAACGGATGATCATTGAGAGCCTTATCAGCATAATCCCACCACAGAAGGATAGTGTCTCGTGCAGCTTCCTTCTTCGGCTTTTGAGAATGGCAAACATGCTGAAAGTAGCACCTGCTTTGGTTACTGAGTTGGAAAAACGGGTGGGAATGCAGTTCGAACAGGCTACTTTGGCGGATCTTCTTATTCCTTCTTACAATAAATGTGAAACTATGTACGACGTGGATCTTGTTCAAAGGCTTCTGGAGCACTTTCTGGTTCAAGAACAGACGGAAATTTCAAGTCCAAGCCAACAATCTTTCCCTGGGAAGCACTATGATGACCTTCAAAGGTCTACCGGTCCAAATGCTAAGATGAGGGTAGCTAGACTTGTCGATAGTTATCTTACTGAGGTGTCCAGAGATAGAAGCCTCTCCCTAACAAAGTTTCAGGTACTGGCAGAAGCTTTGCCTGAGTCTGCAAGGATCTGCGATGATGGACTTTATAGAGCAGTTGATTCCTATCTTAAGGCCCATCCAACACTTTCTGAGCACGAAAGGAAGAGGCTTTGCCGGGTGATGGATTGCCAAAAGCTATCAATTGATGCCTGCATGCATGCTGCCCAAAACGAAAGACTCCCATTGAGAGTGGTAGTGCAGGTCCTTTTCTGTGAACAAGTTAAAATAAGCGATGCATTAGCCACAAGCTCCCTCAAAGAAGCTGGAGACTCTCAGTATCAGCCAATGGTTTCAAATCGAAAAACACTACTTGAAGGGACCCCGCAGTCATTCCAAGAAGGATGGGCTGCCGCTAAAAAAGACATTAACATGGTTAAATTCGAACTGGAGAGTGTGAAAGCCAAGCACCTAGAGCTCCAGCATGACATGGAGAATTTGCAGAGACAGTTTGATAAGATGTCAAAGAATAAACAGACATCGGCATGGAGCAGCGGGTGGAAGAAACTAAGCAAACAACTCGCAAAGAACACAAATTTAGAAAACCAGAACATCGGGCCGGAGCACACAACGGCTGCAGATCAGCAGACTAGAAAGACACCTAGGAAGTGGAGAAATTCCATCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

675

Amino Acids

75.79

Weight (kDa)

7.53

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	228 - 517	5.6e-100	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1084
AasI	GACNNNNNNGTC	1 cut(s)	1723
Acc36I	ACCTGC	4 cut(s)	150, 661, 1084, 1588
AccI	GTMKAC	1 cut(s)	1295
AccII	CGCG	1 cut(s)	237
AciI	CCGC	6 cut(s)	741, 888, 1136, 1721, 1749, 1890
AclWI	GGATC	3 cut(s)	1146, 1194, 1433
AcsI	RAATTY	7 cut(s)	166, 308, 1236, 1775, 1831, 1930, 2011
AfaI	GTAC	4 cut(s)	377, 874, 1178, 1395
AfiI	CCNNNNNNNGG	3 cut(s)	631, 632, 1519
AflII	CTTAAG	1 cut(s)	1466
AgeI	ACCGGT	1 cut(s)	1298
AjiI	CACGTC	1 cut(s)	1183
AjnI	CCWGG	3 cut(s)	274, 814, 1264
AloI	GAACNNNNNNTCC	2 cut(s)	550, 582
Alw21I	GWGCWC	5 cut(s)	99, 1212, 1494, 1815, 1962
Alw26I	GTCTC	5 cut(s)	8, 459, 1024, 1659, 1834
AlwI	GGATC	3 cut(s)	1146, 1194, 1433
AlwNI	CAGNNNCTG	1 cut(s)	1396
AoxI	GGCC	4 cut(s)	288, 954, 1470, 1952
ApoI	RAATTY	7 cut(s)	166, 308, 1236, 1775, 1831, 1930, 2011
AsiGI	ACCGGT	1 cut(s)	1298
Asp700I	GAANNNNTTC	1 cut(s)	519
AspA2I	CCTAGG	1 cut(s)	1997
AspS9I	GGNCC	8 cut(s)	244, 281, 673, 1301, 1471, 1600, 1716, 1952
AsuC2I	CCSGG	2 cut(s)	242, 1514
AsuHPI	GGTGA	3 cut(s)	647, 763, 1528
AsuII	TTCGAA	2 cut(s)	1119, 1779
AsuNHI	GCTAGC	2 cut(s)	298, 620
AvaII	GGWCC	6 cut(s)	244, 281, 673, 1301, 1600, 1716
AvrII	CCTAGG	1 cut(s)	1997
BanII	GRGCYC	2 cut(s)	99, 1815
BauI	CACGAG	1 cut(s)	1021
BbsI	GAAGAC	1 cut(s)	933
Bbv12I	GWGCWC	5 cut(s)	99, 1212, 1494, 1815, 1962
BccI	CCATC	8 cut(s)	80, 250, 582, 1430, 1482, 1513, 1734, 2024
BceAI	ACGGC	1 cut(s)	1983
BcgI	CGANNNNNNTGC	6 cut(s)	284, 318, 533, 567, 1897, 1931
BciT130I	CCWGG	3 cut(s)	276, 816, 1266
BciVI	GTATCC	1 cut(s)	195
BclI	TGATCA	3 cut(s)	718, 822, 972
BcnI	CCSGG	2 cut(s)	242, 1514
BcoDI	GTCTC	5 cut(s)	8, 459, 1024, 1659, 1834
BfaI	CTAG	9 cut(s)	146, 152, 299, 600, 621, 1326, 1808, 1986, 1998
BfmI	CTRYAG	2 cut(s)	369, 1971
BfrI	CTTAAG	1 cut(s)	1466
BfuAI	ACCTGC	4 cut(s)	150, 661, 1084, 1588
BfuI	GTATCC	1 cut(s)	195
BlnI	CCTAGG	1 cut(s)	1997
Bme1390I	CCNGG	5 cut(s)	242, 276, 816, 1266, 1514
Bme18I	GGWCC	6 cut(s)	244, 281, 673, 1301, 1600, 1716
BmgBI	CACGTC	1 cut(s)	1183
BmgT120I	GGNCC	8 cut(s)	244, 281, 673, 1301, 1471, 1600, 1716, 1952
BmiI	GGNNCC	3 cut(s)	675, 1717, 1718
BmrFI	CCNGG	5 cut(s)	242, 276, 816, 1266, 1514
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	5 cut(s)	527, 780, 809, 1534, 1621
BmtI	GCTAGC	2 cut(s)	302, 624
BmuI	ACTGGG	1 cut(s)	640
BoxI	GACNNNNGTC	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	933
BpmI	CTGGAG	4 cut(s)	1226, 1683, 1799, 1805
Bpu14I	TTCGAA	2 cut(s)	1119, 1779
BpuEI	CTTGAG	3 cut(s)	83, 379, 634
BpuMI	CCSGG	2 cut(s)	242, 1514
BsaBI	GATNNNNATC	2 cut(s)	1341, 1461
BsaJI	CCNNGG	4 cut(s)	506, 1264, 1265, 1997
BsaWI	WCCGGW	1 cut(s)	1298
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 632, 1519
Bse118I	RCCGGY	1 cut(s)	1298
Bse1I	ACTGG	3 cut(s)	635, 1401, 1788
Bse3DI	GCAATG	1 cut(s)	792
Bse8I	GATNNNNATC	2 cut(s)	1341, 1461
BseBI	CCWGG	3 cut(s)	276, 816, 1266
BseDI	CCNNGG	4 cut(s)	506, 1264, 1265, 1997
BseGI	GGATG	7 cut(s)	62, 166, 271, 765, 975, 1474, 1745
BseJI	GATNNNNATC	2 cut(s)	1341, 1461
BseLI	CCNNNNNNNGG	3 cut(s)	631, 632, 1519
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	8 cut(s)	9, 239, 417, 1080, 1341, 1404, 1479, 1685
BseNI	ACTGG	3 cut(s)	635, 1401, 1788
BsgI	GTGCAG	3 cut(s)	861, 1045, 1616
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	290, 956, 1472, 1954
BshTI	ACCGGT	1 cut(s)	1298
BsiHKAI	GWGCWC	5 cut(s)	99, 1212, 1494, 1815, 1962
BsiSI	CCGG	4 cut(s)	242, 1299, 1513, 1955
BslFI	GGGAC	2 cut(s)	659, 1729
BslI	CCNNNNNNNGG	3 cut(s)	631, 632, 1519
BsmAI	GTCTC	5 cut(s)	8, 459, 1024, 1659, 1834
BsmFI	GGGAC	2 cut(s)	659, 1729
BsmI	GAATGC	1 cut(s)	1116
BsnI	GGCC	4 cut(s)	290, 956, 1472, 1954
Bsp119I	TTCGAA	2 cut(s)	1119, 1779
Bsp1286I	GDGCHC	5 cut(s)	99, 1212, 1494, 1815, 1962
Bsp19I	CCATGG	1 cut(s)	506
BspACI	CCGC	6 cut(s)	741, 888, 1136, 1721, 1749, 1890
BspANI	GGCC	4 cut(s)	290, 956, 1472, 1954
BspCNI	CTCAG	9 cut(s)	4, 10, 240, 418, 1081, 1342, 1405, 1480, 1684
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	675, 1717, 1718
BspMAI	CTGCAG	2 cut(s)	373, 1975
BspMI	ACCTGC	4 cut(s)	150, 661, 1084, 1588
BspOI	GCTAGC	2 cut(s)	302, 624
BspPI	GGATC	3 cut(s)	1146, 1194, 1433
BspT104I	TTCGAA	2 cut(s)	1119, 1779
BspTI	CTTAAG	1 cut(s)	1466
BsrDI	GCAATG	1 cut(s)	792
BsrFI	RCCGGY	1 cut(s)	1298
BsrI	ACTGG	3 cut(s)	635, 1401, 1788
BssAI	RCCGGY	1 cut(s)	1298
BssECI	CCNNGG	4 cut(s)	506, 1264, 1265, 1997
BssSI	CACGAG	1 cut(s)	1021
BssT1I	CCWWGG	2 cut(s)	506, 1997
Bst2BI	CACGAG	1 cut(s)	1021
Bst2UI	CCWGG	3 cut(s)	276, 816, 1266
Bst4CI	ACNGT	2 cut(s)	902, 1845
Bst6I	CTCTTC	1 cut(s)	1496
BstAFI	CTTAAG	1 cut(s)	1466
BstBI	TTCGAA	2 cut(s)	1119, 1779
BstC8I	GCNNGC	6 cut(s)	300, 622, 668, 1549, 1553, 1557
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	7 cut(s)	62, 166, 271, 765, 975, 1474, 1745
BstFNI	CGCG	1 cut(s)	237
BstMAI	GTCTC	5 cut(s)	8, 459, 1024, 1659, 1834
BstMWI	GCNNNNNNNGC	6 cut(s)	560, 864, 990, 1133, 1207, 1810
BstNI	CCWGG	3 cut(s)	276, 816, 1266
BstNSI	RCATGY	3 cut(s)	1063, 1555, 1559
BstPAI	GACNNNNGTC	1 cut(s)	651
BstSCI	CCNGG	5 cut(s)	240, 274, 814, 1264, 1512
BstSFI	CTRYAG	2 cut(s)	369, 1971
BstUI	CGCG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	933
BstX2I	RGATCY	3 cut(s)	1138, 1186, 1425
BstYI	RGATCY	3 cut(s)	1138, 1186, 1425
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	290, 956, 1472, 1954
BtgI	CCRYGG	1 cut(s)	506
BtgZI	GCGATG	2 cut(s)	1446, 1644
BtrI	CACGTC	1 cut(s)	1183
BtsCI	GGATG	7 cut(s)	62, 166, 271, 765, 975, 1474, 1745
BveI	ACCTGC	4 cut(s)	150, 661, 1084, 1588
Cac8I	GCNNGC	6 cut(s)	300, 622, 668, 1549, 1553, 1557
CaiI	CAGNNNCTG	1 cut(s)	1396
Cfr10I	RCCGGY	1 cut(s)	1298
Cfr13I	GGNCC	8 cut(s)	244, 281, 673, 1301, 1471, 1600, 1716, 1952
Csp6I	GTAC	4 cut(s)	376, 873, 1177, 1394
CspAI	ACCGGT	1 cut(s)	1298
CviQI	GTAC	4 cut(s)	376, 873, 1177, 1394
DrdI	GACNNNNNNGTC	1 cut(s)	1723
DseDI	GACNNNNNNGTC	1 cut(s)	1723
Eam1104I	CTCTTC	1 cut(s)	1496
EarI	CTCTTC	1 cut(s)	1496
EciI	GGCGGA	1 cut(s)	1151
Ecl136II	GAGCTC	2 cut(s)	97, 1813
Eco130I	CCWWGG	2 cut(s)	506, 1997
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	2 cut(s)	99, 1815
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	6 cut(s)	244, 281, 673, 1301, 1600, 1716
Eco53kI	GAGCTC	2 cut(s)	97, 1813
EcoICRI	GAGCTC	2 cut(s)	97, 1813
EcoO109I	RGGNCCY	3 cut(s)	673, 1600, 1716
EcoRII	CCWGG	3 cut(s)	274, 814, 1264
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	506, 1997
EcoT22I	ATGCAT	3 cut(s)	795, 1557, 1636
EcoT38I	GRGCYC	2 cut(s)	99, 1815
ErhI	CCWWGG	2 cut(s)	506, 1997
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	2 cut(s)	659, 1729
FauI	CCCGC	2 cut(s)	1728, 1883
FauNDI	CATATG	1 cut(s)	912
FbaI	TGATCA	3 cut(s)	718, 822, 972
FblI	GTMKAC	1 cut(s)	1295
FokI	GGATG	7 cut(s)	49, 173, 278, 772, 982, 1461, 1752
FriOI	GRGCYC	2 cut(s)	99, 1815
FspBI	CTAG	9 cut(s)	146, 152, 299, 600, 621, 1326, 1808, 1986, 1998
GsuI	CTGGAG	4 cut(s)	1226, 1683, 1799, 1805
HaeIII	GGCC	4 cut(s)	290, 956, 1472, 1954
HapII	CCGG	4 cut(s)	242, 1299, 1513, 1955
HindIII	AAGCTT	2 cut(s)	561, 1404
HpaII	CCGG	4 cut(s)	242, 1299, 1513, 1955
HphI	GGTGA	3 cut(s)	647, 763, 1528
Hpy166II	GTNNAC	4 cut(s)	281, 905, 1296, 1613
Hpy188I	TCNGA	4 cut(s)	13, 533, 731, 1489
Hpy188III	TCNNGA	5 cut(s)	680, 1205, 1223, 1359, 2022
Hpy8I	GTNNAC	4 cut(s)	281, 905, 1296, 1613
Hpy99I	CGWCG	1 cut(s)	1184
HpyCH4III	ACNGT	2 cut(s)	902, 1845
HpyCH4IV	ACGT	1 cut(s)	1182
HpyF10VI	GCNNNNNNNGC	6 cut(s)	560, 864, 990, 1133, 1207, 1810
HpySE526I	ACGT	1 cut(s)	1182
KflI	GGGWCCC	1 cut(s)	1716
Ksp22I	TGATCA	3 cut(s)	718, 822, 972
LmnI	GCTCC	6 cut(s)	779, 1207, 1652, 1818, 1884, 1957
LweI	GCATC	5 cut(s)	527, 780, 809, 1534, 1621
MaeI	CTAG	9 cut(s)	146, 152, 299, 600, 621, 1326, 1808, 1986, 1998
MaeII	ACGT	1 cut(s)	1182
MaeIII	GTNAC	3 cut(s)	137, 635, 1084
MfeI	CAATTG	1 cut(s)	1539
MflI	RGATCY	3 cut(s)	1138, 1186, 1425
MhlI	GDGCHC	5 cut(s)	99, 1212, 1494, 1815, 1962
MlyI	GAGTC	9 cut(s)	29, 228, 461, 554, 641, 947, 1424, 1569, 1661
MmeI	TCCRAC	4 cut(s)	7, 875, 1074, 1502
Mph1103I	ATGCAT	3 cut(s)	795, 1557, 1636
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	6 cut(s)	78, 747, 1467, 1620, 1764, 1773
MslI	CAYNNNNRTG	5 cut(s)	476, 805, 1278, 1766, 1879
MspA1I	CMGCKG	1 cut(s)	1890
MspCI	CTTAAG	1 cut(s)	1466
MspI	CCGG	4 cut(s)	242, 1299, 1513, 1955
MspR9I	CCNGG	5 cut(s)	242, 276, 816, 1266, 1514
MunI	CAATTG	1 cut(s)	1539
Mva1269I	GAATGC	1 cut(s)	1116
MvaI	CCWGG	3 cut(s)	276, 816, 1266
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	6 cut(s)	560, 864, 990, 1133, 1207, 1810
NciI	CCSGG	2 cut(s)	242, 1514
NcoI	CCATGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	912
NheI	GCTAGC	2 cut(s)	298, 620
NlaIV	GGNNCC	3 cut(s)	675, 1717, 1718
NmuCI	GTSAC	2 cut(s)	137, 635
NsiI	ATGCAT	3 cut(s)	795, 1557, 1636
NspI	RCATGY	3 cut(s)	1063, 1555, 1559
NspV	TTCGAA	2 cut(s)	1119, 1779
PaeI	GCATGC	2 cut(s)	1555, 1559
PaqCI	CACCTGC	1 cut(s)	1084
PasI	CCCWGGG	1 cut(s)	1265
PceI	AGGCCT	1 cut(s)	290
PctI	GAATGC	1 cut(s)	1116
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	8, 916, 1457
PflFI	GACNNNGTC	1 cut(s)	19
PinAI	ACCGGT	1 cut(s)	1298
PleI	GAGTC	9 cut(s)	28, 227, 461, 553, 641, 946, 1423, 1569, 1661
PpsI	GAGTC	9 cut(s)	28, 227, 461, 553, 641, 946, 1423, 1569, 1661
PpuMI	RGGWCCY	3 cut(s)	673, 1600, 1716
PshAI	GACNNNNGTC	1 cut(s)	651
Psp124BI	GAGCTC	2 cut(s)	99, 1815
Psp5II	RGGWCCY	3 cut(s)	673, 1600, 1716
Psp6I	CCWGG	3 cut(s)	274, 814, 1264
PspGI	CCWGG	3 cut(s)	274, 814, 1264
PspN4I	GGNNCC	3 cut(s)	675, 1717, 1718
PspPI	GGNCC	8 cut(s)	244, 281, 673, 1301, 1471, 1600, 1716, 1952
PspPPI	RGGWCCY	3 cut(s)	673, 1600, 1716
PstI	CTGCAG	2 cut(s)	373, 1975
PstNI	CAGNNNCTG	1 cut(s)	1396
PsuI	RGATCY	3 cut(s)	1138, 1186, 1425
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	4 cut(s)	377, 874, 1178, 1395
RsaNI	GTAC	4 cut(s)	376, 873, 1177, 1394
RseI	CAYNNNNRTG	5 cut(s)	476, 805, 1278, 1766, 1879
SacI	GAGCTC	2 cut(s)	99, 1815
SaqAI	TTAA	6 cut(s)	78, 747, 1467, 1620, 1764, 1773
Sau96I	GGNCC	8 cut(s)	244, 281, 673, 1301, 1471, 1600, 1716, 1952
SchI	GAGTC	9 cut(s)	29, 228, 461, 554, 641, 947, 1424, 1569, 1661
ScrFI	CCNGG	5 cut(s)	242, 276, 816, 1266, 1514
SduI	GDGCHC	5 cut(s)	99, 1212, 1494, 1815, 1962
SfaNI	GCATC	5 cut(s)	527, 780, 809, 1534, 1621
SfcI	CTRYAG	2 cut(s)	369, 1971
SfuI	TTCGAA	2 cut(s)	1119, 1779
SinI	GGWCC	6 cut(s)	244, 281, 673, 1301, 1600, 1716
SmiMI	CAYNNNNRTG	5 cut(s)	476, 805, 1278, 1766, 1879
SmlI	CTYRAG	4 cut(s)	98, 358, 649, 1466
SmoI	CTYRAG	4 cut(s)	98, 358, 649, 1466
SphI	GCATGC	2 cut(s)	1555, 1559
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	6 cut(s)	741, 888, 1136, 1721, 1749, 1890
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	9 cut(s)	146, 152, 299, 600, 621, 1326, 1808, 1986, 1998
SstI	GAGCTC	2 cut(s)	99, 1815
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	5 cut(s)	240, 274, 814, 1264, 1512
StyI	CCWWGG	2 cut(s)	506, 1997
TaaI	ACNGT	2 cut(s)	902, 1845
TaiI	ACGT	1 cut(s)	1185
TaqI	TCGA	5 cut(s)	294, 1119, 1335, 1696, 1779
TatI	WGTACW	1 cut(s)	872
TauI	GCSGC	1 cut(s)	1751
TfiI	GAWTC	3 cut(s)	8, 916, 1457
Tru1I	TTAA	6 cut(s)	78, 747, 1467, 1620, 1764, 1773
Tru9I	TTAA	6 cut(s)	78, 747, 1467, 1620, 1764, 1773
TseFI	GTSAC	2 cut(s)	137, 635
Tsp45I	GTSAC	2 cut(s)	137, 635
TspDTI	ATGAA	6 cut(s)	51, 243, 656, 843, 864, 899
TspGWI	ACGGA	2 cut(s)	982, 1247
Tth111I	GACNNNGTC	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	1466
VpaK11BI	GGWCC	6 cut(s)	244, 281, 673, 1301, 1600, 1716
XapI	RAATTY	7 cut(s)	166, 308, 1236, 1775, 1831, 1930, 2011
XceI	RCATGY	3 cut(s)	1063, 1555, 1559
XmaJI	CCTAGG	1 cut(s)	1997
XmiI	GTMKAC	1 cut(s)	1295
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	9 cut(s)	146, 152, 299, 600, 621, 1326, 1808, 1986, 1998
Zsp2I	ATGCAT	3 cut(s)	795, 1557, 1636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.