Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Forward (+)

33243833 .. 33247671

Gene Structure 3839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG182500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

ATGTACAAGACTGAGCTTAATCTAATAGTTTATTTGAATACTAATAAGACTGAAGCTCTATGTATCTTGTTGTTTTTGAAGTATCCCCTGCTGTCAAGGAGTGGAAAGATCAACAGAATCATGTATGAATTACGAGACCCGGACTTGAGTAAGATTGTTTTGGATGACCTTCCTGGTGGACCCGAGTCTTTTGAGCTAGCTGCAAAGTTCTGCTATGGAATTGCTGTTGATCTTACAGCAGCCAATATATCAGACCTTAGATGTGCTGCAGAGTTCCTTGAAATGACAGAAGACTTGGAAGAAGGCAATCTTATTTTCAAAACCGAAGCATTTCTCAGCTATGTGGTTTTGTCCTCGTGGAGAGACTCCATAGTGGTGTTGAAAAGTTGTGAGAAGCTCTCACCATGGGCTGAAAACCTCCAAATTGTTCGAAGATGTAGCGAGTCCATTGCTTGGAAAGCTTGTGCCAATCCAAAAGGGATACGATGGACATACACCGGTAAGCCTCCAAAAGTTTCAAGCCCAACTTGGAATGACACGAAAGACTCAAGTCCAAGTAGAAACCAGCAAGTTCCTCCTGATTGGTGGTTTGAGGATGCTTCAATTCTTCGCATTGACCATTACGTCAGGGTTATTACTGCTATTAAGGTAAAGGGGATGAGATTTGAACTGATTGGAGCTGCAATAATGCACTATGCAGCTAAATGGCTCCCTGGTATGATAACTGATGGCTCGGGGGCAGCCGATGAAGGAAGCAAAGCCAGCAATAGTAATACTGGTAATACTGGGAGCAGATGGAAGGGTGGACTCCACCTGATTGTGGCTGGAACTAAAGATGAGCCTTCACCTGTTCAGGCCAAAGATCAACGTATGATCATTGAGAGCCTTATTAGCATTATTCCTCCGCAGAAGGATAGTGTTTCATGCAGCTTCCTTCTTCGACTTTTGAGAATGGCAAACATGTTGAAAGTAGCACCTGCACTGGTTACAGAGTTGGAAAAACGGGTGGGAATGCAGTTTGAACAGGCTACATTGGCAGATCTTCTTATTCCTTCTTTCAATAAGAATGAAACTATGTATGATGTGGATCTTGTTCAGAGGCTTCTGGAGCATTTTCTTGTTCAAGAACAGACTGAAATTTCAAGTCCAAGCCAACAATCTTTTATTGAAAAACACTACGATGGAACTCAAAGGGGTACAGGCCCAAATGCTAAGATGAGGGTAGCTAGGCTTGTTGATAGTTATCTTACAGAGGTGTCAAGAGATAGAAGTCTTTCCCTAACAAAGTTTCAGGTACTGGCAGAAGCTTTGCCTGAATCTGCAAGAATATGTGATGATGGACTTTATAGAGCAATTGATTCATATCTCAAGGCCCATCCAACACTCTCTGAGCATGAAAGGAAGAGGCTCTGCAGGGTGATGGATTGCCAAAAGCTATCAATTGATGCTTGCATGCATGCCGCACAAAATGAAAGGCTCCCATTAAGAGTGGTGGTGCAAGTCCTTTTCTCTGAACAAGTGAAGATAAGCAATGCATTAGCTAACAATGCCCTTAAAGAAGCCGGAGACTCTCACTATCAGCCCATGGTTTCAAATCGGAAAACATTACTTGAAGGGACCCCACAATCCTTCCAAGAAGGATGGGCAGCAGCTAAGAAGGACATCAACACTGTAATGTTTGAACTGGAGAGCGTAAAAGCCAAGTACCTTGAGCTCCAGAATGACATGGAAAACTTACAGCGACAGTTCGAAAAGATGTCAAAGCAGAAACACACGTCGGCATGGAGCAGCGGGTGGAAGAAACTCAGCAAACTCACTAAGACTACAACTTTTGAGAACCAGAACATTGGGCCTGAGCATCCATCAGCTGCTGCTGAACAGACAACAAAAACACCTAGGAGGTGGAGGAATTCCATTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

640

Amino Acids

72.15

Weight (kDa)

8.31

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	194 - 484	3.2e-99	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	985
AasI	GACNNNNNNGTC	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	985
AccB7I	CCANNNNNTGG	1 cut(s)	453
AciI	CCGC	3 cut(s)	905, 1461, 1791
AclWI	GGATC	1 cut(s)	1095
AcsI	RAATTY	2 cut(s)	1137, 1909
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	4 cut(s)	5, 1198, 1296, 1706
AfiI	CCNNNNNNNGG	2 cut(s)	453, 820
AflIII	ACRYGT	2 cut(s)	960, 1773
AgeI	ACCGGT	1 cut(s)	497
AjiI	CACGTC	1 cut(s)	1776
AjnI	CCWGG	2 cut(s)	172, 712
Alw21I	GWGCWC	1 cut(s)	1716
Alw26I	GTCTC	3 cut(s)	129, 357, 1560
AlwI	GGATC	1 cut(s)	1095
AlwNI	CAGNNNCTG	2 cut(s)	1297, 1871
Ama87I	CYCGRG	2 cut(s)	182, 733
AoxI	GGCC	4 cut(s)	855, 1201, 1371, 1850
ApoI	RAATTY	2 cut(s)	1137, 1909
AsiGI	ACCGGT	1 cut(s)	497
Asp700I	GAANNNNTTC	2 cut(s)	330, 1273
AspA2I	CCTAGG	1 cut(s)	1895
AspS9I	GGNCC	5 cut(s)	179, 1202, 1372, 1617, 1850
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	393, 837, 1429
AsuII	TTCGAA	2 cut(s)	430, 1749
AsuNHI	GCTAGC	1 cut(s)	196
AvaI	CYCGRG	2 cut(s)	182, 733
AvaII	GGWCC	2 cut(s)	179, 1617
AvrII	CCTAGG	1 cut(s)	1895
BanII	GRGCYC	1 cut(s)	1716
BauI	CACGAG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	1716
BccI	CCATC	9 cut(s)	480, 722, 789, 1175, 1331, 1383, 1414, 1635, 1870
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	2 cut(s)	174, 714
BciVI	GTATCC	2 cut(s)	93, 474
BclI	TGATCA	1 cut(s)	873
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	3 cut(s)	129, 357, 1560
BfaI	CTAG	4 cut(s)	197, 1227, 1896, 1921
BfmI	CTRYAG	2 cut(s)	267, 1411
BfuAI	ACCTGC	1 cut(s)	985
BfuI	GTATCC	2 cut(s)	93, 474
BglII	AGATCT	1 cut(s)	1039
BlnI	CCTAGG	1 cut(s)	1895
Bme1390I	CCNGG	3 cut(s)	140, 174, 714
Bme18I	GGWCC	2 cut(s)	179, 1617
BmeT110I	CYCGRG	2 cut(s)	182, 733
BmgBI	CACGTC	1 cut(s)	1776
BmgT120I	GGNCC	5 cut(s)	179, 1202, 1372, 1617, 1850
BmiI	GGNNCC	5 cut(s)	181, 710, 1478, 1618, 1619
BmrFI	CCNGG	3 cut(s)	140, 174, 714
BmrI	ACTGGG	1 cut(s)	795
BmsI	GCATC	3 cut(s)	586, 1435, 1867
BmtI	GCTAGC	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	795
BoxI	GACNNNNGTC	2 cut(s)	184, 549
BpiI	GAAGAC	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpmI	CTGGAG	3 cut(s)	1127, 1700, 1706
Bpu10I	CCTNAGC	1 cut(s)	1854
Bpu14I	TTCGAA	2 cut(s)	430, 1749
BpuEI	CTTGAG	4 cut(s)	166, 532, 1352, 1730
BpuMI	CCSGG	1 cut(s)	140
BsaBI	GATNNNNATC	3 cut(s)	1086, 1242, 1362
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	4 cut(s)	404, 712, 1584, 1895
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 820
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	5 cut(s)	781, 790, 987, 1302, 1689
Bse3DI	GCAATG	2 cut(s)	447, 1537
Bse8I	GATNNNNATC	3 cut(s)	1086, 1242, 1362
BseBI	CCWGG	2 cut(s)	174, 714
BseDI	CCNNGG	4 cut(s)	404, 712, 1584, 1895
BseGI	GGATG	6 cut(s)	169, 601, 663, 1375, 1646, 1858
BseJI	GATNNNNATC	3 cut(s)	1086, 1242, 1362
BseLI	CCNNNNNNNGG	2 cut(s)	453, 820
BseMI	GCAATG	2 cut(s)	447, 1537
BseMII	CTCAG	4 cut(s)	349, 1380, 1819, 1845
BseNI	ACTGG	5 cut(s)	781, 790, 987, 1302, 1689
BsgI	GTGCAG	1 cut(s)	963
BshFI	GGCC	4 cut(s)	857, 1203, 1373, 1852
BshTI	ACCGGT	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	1716
BsiHKCI	CYCGRG	2 cut(s)	182, 733
BsiSI	CCGG	3 cut(s)	140, 498, 1563
BslFI	GGGAC	1 cut(s)	1630
BslI	CCNNNNNNNGG	2 cut(s)	453, 820
BsmAI	GTCTC	3 cut(s)	129, 357, 1560
BsmFI	GGGAC	1 cut(s)	1630
BsmI	GAATGC	1 cut(s)	1017
BsnI	GGCC	4 cut(s)	857, 1203, 1373, 1852
Bso31I	GGTCTC	1 cut(s)	129
BsoBI	CYCGRG	2 cut(s)	182, 733
Bsp119I	TTCGAA	2 cut(s)	430, 1749
Bsp1286I	GDGCHC	1 cut(s)	1716
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	108, 229, 862, 873, 1039, 1087
Bsp19I	CCATGG	2 cut(s)	404, 1584
BspACI	CCGC	3 cut(s)	905, 1461, 1791
BspANI	GGCC	4 cut(s)	857, 1203, 1373, 1852
BspCNI	CTCAG	5 cut(s)	4, 348, 1381, 1818, 1846
BspLI	GGNNCC	5 cut(s)	181, 710, 1478, 1618, 1619
BspMAI	CTGCAG	2 cut(s)	271, 1415
BspMI	ACCTGC	1 cut(s)	985
BspOI	GCTAGC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	1095
BspT104I	TTCGAA	2 cut(s)	430, 1749
BspTNI	GGTCTC	1 cut(s)	129
BsrDI	GCAATG	2 cut(s)	447, 1537
BsrFI	RCCGGY	1 cut(s)	497
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	781, 790, 987, 1302, 1689
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	4 cut(s)	404, 712, 1584, 1895
BssMI	GATC	6 cut(s)	108, 229, 862, 873, 1039, 1087
BssSI	CACGAG	1 cut(s)	355
BssT1I	CCWWGG	3 cut(s)	404, 1584, 1895
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	174, 714
Bst4CI	ACNGT	2 cut(s)	1672, 1746
Bst6I	CTCTTC	1 cut(s)	1397
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	2 cut(s)	430, 1749
BstC8I	GCNNGC	5 cut(s)	198, 763, 1450, 1454, 1458
BstDEI	CTNAG	9 cut(s)	12, 257, 335, 1212, 1389, 1653, 1805, 1818, 1854
BstDSI	CCRYGG	2 cut(s)	404, 1584
BstF5I	GGATG	6 cut(s)	169, 601, 663, 1375, 1646, 1858
BstKTI	GATC	6 cut(s)	111, 232, 865, 876, 1042, 1090
BstMAI	GTCTC	3 cut(s)	129, 357, 1560
BstMBI	GATC	6 cut(s)	108, 229, 862, 873, 1039, 1087
BstMWI	GCNNNNNNNGC	6 cut(s)	458, 762, 891, 1034, 1108, 1547
BstNI	CCWGG	2 cut(s)	174, 714
BstNSI	RCATGY	3 cut(s)	964, 1456, 1460
BstPAI	GACNNNNGTC	2 cut(s)	184, 549
BstSCI	CCNGG	3 cut(s)	138, 172, 712
BstSFI	CTRYAG	2 cut(s)	267, 1411
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	1039, 1087
BstXI	CCANNNNNNTGG	1 cut(s)	1847
BstYI	RGATCY	2 cut(s)	1039, 1087
BsuI	GTATCC	2 cut(s)	93, 474
BsuRI	GGCC	4 cut(s)	857, 1203, 1373, 1852
BtgI	CCRYGG	2 cut(s)	404, 1584
BtrI	CACGTC	1 cut(s)	1776
BtsCI	GGATG	6 cut(s)	169, 601, 663, 1375, 1646, 1858
BtsIMutI	CAGTG	2 cut(s)	980, 1668
BveI	ACCTGC	1 cut(s)	985
Cac8I	GCNNGC	5 cut(s)	198, 763, 1450, 1454, 1458
CaiI	CAGNNNCTG	2 cut(s)	1297, 1871
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	5 cut(s)	179, 1202, 1372, 1617, 1850
Csp6I	GTAC	4 cut(s)	4, 1197, 1295, 1705
CspAI	ACCGGT	1 cut(s)	497
CviQI	GTAC	4 cut(s)	4, 1197, 1295, 1705
DdeI	CTNAG	9 cut(s)	12, 257, 335, 1212, 1389, 1653, 1805, 1818, 1854
DpnI	GATC	6 cut(s)	110, 231, 864, 875, 1041, 1089
DpnII	GATC	6 cut(s)	108, 229, 862, 873, 1039, 1087
DrdI	GACNNNNNNGTC	1 cut(s)	623
DseDI	GACNNNNNNGTC	1 cut(s)	623
Eam1104I	CTCTTC	1 cut(s)	1397
EarI	CTCTTC	1 cut(s)	1397
Ecl136II	GAGCTC	1 cut(s)	1714
Eco130I	CCWWGG	3 cut(s)	404, 1584, 1895
Eco24I	GRGCYC	1 cut(s)	1716
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	179, 1617
Eco53kI	GAGCTC	1 cut(s)	1714
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	182, 733
EcoICRI	GAGCTC	1 cut(s)	1714
EcoO109I	RGGNCCY	1 cut(s)	1617
EcoRI	GAATTC	1 cut(s)	1909
EcoRII	CCWGG	2 cut(s)	172, 712
EcoT14I	CCWWGG	3 cut(s)	404, 1584, 1895
EcoT22I	ATGCAT	2 cut(s)	1458, 1537
EcoT38I	GRGCYC	1 cut(s)	1716
ErhI	CCWWGG	3 cut(s)	404, 1584, 1895
FalI	AAGNNNNNCTT	4 cut(s)	294, 326, 511, 543
FaqI	GGGAC	1 cut(s)	1630
FauI	CCCGC	1 cut(s)	1784
FbaI	TGATCA	1 cut(s)	873
FokI	GGATG	6 cut(s)	176, 608, 670, 1362, 1653, 1845
FriOI	GRGCYC	1 cut(s)	1716
FspBI	CTAG	4 cut(s)	197, 1227, 1896, 1921
GsuI	CTGGAG	3 cut(s)	1127, 1700, 1706
HaeIII	GGCC	4 cut(s)	857, 1203, 1373, 1852
HapII	CCGG	3 cut(s)	140, 498, 1563
HindIII	AAGCTT	2 cut(s)	459, 1305
HinfI	GANTC	9 cut(s)	117, 185, 365, 443, 545, 807, 1316, 1358, 1568
HpaII	CCGG	3 cut(s)	140, 498, 1563
HphI	GGTGA	3 cut(s)	393, 837, 1429
Hpy166II	GTNNAC	2 cut(s)	179, 806
Hpy188I	TCNGA	5 cut(s)	253, 1098, 1390, 1513, 1599
Hpy188III	TCNNGA	5 cut(s)	578, 1106, 1124, 1260, 1717
Hpy8I	GTNNAC	2 cut(s)	179, 806
Hpy99I	CGWCG	1 cut(s)	1780
HpyCH4III	ACNGT	2 cut(s)	1672, 1746
HpyCH4IV	ACGT	3 cut(s)	624, 868, 1775
HpyF10VI	GCNNNNNNNGC	6 cut(s)	458, 762, 891, 1034, 1108, 1547
HpyF3I	CTNAG	9 cut(s)	12, 257, 335, 1212, 1389, 1653, 1805, 1818, 1854
HpySE526I	ACGT	3 cut(s)	624, 868, 1775
KflI	GGGWCCC	1 cut(s)	1617
Ksp22I	TGATCA	1 cut(s)	873
Kzo9I	GATC	6 cut(s)	108, 229, 862, 873, 1039, 1087
LmnI	GCTCC	7 cut(s)	677, 714, 789, 1108, 1482, 1719, 1785
LweI	GCATC	3 cut(s)	586, 1435, 1867
MaeI	CTAG	4 cut(s)	197, 1227, 1896, 1921
MaeII	ACGT	3 cut(s)	624, 868, 1775
MaeIII	GTNAC	1 cut(s)	985
MalI	GATC	6 cut(s)	110, 231, 864, 875, 1041, 1089
MboI	GATC	6 cut(s)	108, 229, 862, 873, 1039, 1087
MboII	GAAGA	9 cut(s)	302, 311, 444, 599, 929, 1034, 1414, 1534, 1810
MfeI	CAATTG	2 cut(s)	1353, 1440
MflI	RGATCY	2 cut(s)	1039, 1087
MhlI	GDGCHC	1 cut(s)	1716
MluCI	AATT	8 cut(s)	128, 219, 423, 603, 1137, 1353, 1440, 1909
MlyI	GAGTC	6 cut(s)	194, 359, 452, 539, 801, 1562
MmeI	TCCRAC	2 cut(s)	975, 1403
Mph1103I	ATGCAT	2 cut(s)	1458, 1537
MroXI	GAANNNNTTC	2 cut(s)	330, 1273
MseI	TTAA	4 cut(s)	18, 645, 1484, 1554
MslI	CAYNNNNRTG	3 cut(s)	374, 1179, 1673
MspA1I	CMGCKG	2 cut(s)	1791, 1868
MspI	CCGG	3 cut(s)	140, 498, 1563
MspR9I	CCNGG	3 cut(s)	140, 174, 714
MunI	CAATTG	2 cut(s)	1353, 1440
Mva1269I	GAATGC	1 cut(s)	1017
MvaI	CCWGG	2 cut(s)	174, 714
MwoI	GCNNNNNNNGC	6 cut(s)	458, 762, 891, 1034, 1108, 1547
NciI	CCSGG	1 cut(s)	140
NcoI	CCATGG	2 cut(s)	404, 1584
NdeII	GATC	6 cut(s)	108, 229, 862, 873, 1039, 1087
NheI	GCTAGC	1 cut(s)	196
NlaIV	GGNNCC	5 cut(s)	181, 710, 1478, 1618, 1619
NsiI	ATGCAT	2 cut(s)	1458, 1537
NspI	RCATGY	3 cut(s)	964, 1456, 1460
NspV	TTCGAA	2 cut(s)	430, 1749
PaeI	GCATGC	2 cut(s)	1456, 1460
PaqCI	CACCTGC	1 cut(s)	985
PciI	ACATGT	1 cut(s)	960
PctI	GAATGC	1 cut(s)	1017
PdmI	GAANNNNTTC	2 cut(s)	330, 1273
PfeI	GAWTC	3 cut(s)	117, 1316, 1358
PflMI	CCANNNNNTGG	1 cut(s)	453
PinAI	ACCGGT	1 cut(s)	497
PleI	GAGTC	6 cut(s)	193, 359, 451, 539, 801, 1562
PpsI	GAGTC	6 cut(s)	193, 359, 451, 539, 801, 1562
PpuMI	RGGWCCY	1 cut(s)	1617
PscI	ACATGT	1 cut(s)	960
PshAI	GACNNNNGTC	2 cut(s)	184, 549
Psp124BI	GAGCTC	1 cut(s)	1716
Psp5II	RGGWCCY	1 cut(s)	1617
Psp6I	CCWGG	2 cut(s)	172, 712
PspGI	CCWGG	2 cut(s)	172, 712
PspN4I	GGNNCC	5 cut(s)	181, 710, 1478, 1618, 1619
PspPI	GGNCC	5 cut(s)	179, 1202, 1372, 1617, 1850
PspPPI	RGGWCCY	1 cut(s)	1617
PstI	CTGCAG	2 cut(s)	271, 1415
PstNI	CAGNNNCTG	2 cut(s)	1297, 1871
PsuI	RGATCY	2 cut(s)	1039, 1087
PvuII	CAGCTG	1 cut(s)	1868
RsaI	GTAC	4 cut(s)	5, 1198, 1296, 1706
RsaNI	GTAC	4 cut(s)	4, 1197, 1295, 1705
RseI	CAYNNNNRTG	3 cut(s)	374, 1179, 1673
SacI	GAGCTC	1 cut(s)	1716
SaqAI	TTAA	4 cut(s)	18, 645, 1484, 1554
Sau3AI	GATC	6 cut(s)	108, 229, 862, 873, 1039, 1087
Sau96I	GGNCC	5 cut(s)	179, 1202, 1372, 1617, 1850
SchI	GAGTC	6 cut(s)	194, 359, 452, 539, 801, 1562
ScrFI	CCNGG	3 cut(s)	140, 174, 714
SduI	GDGCHC	1 cut(s)	1716
SfaNI	GCATC	3 cut(s)	586, 1435, 1867
SfcI	CTRYAG	2 cut(s)	267, 1411
SfuI	TTCGAA	2 cut(s)	430, 1749
SinI	GGWCC	2 cut(s)	179, 1617
SmiMI	CAYNNNNRTG	3 cut(s)	374, 1179, 1673
SmlI	CTYRAG	4 cut(s)	145, 547, 1367, 1709
SmoI	CTYRAG	4 cut(s)	145, 547, 1367, 1709
SphI	GCATGC	2 cut(s)	1456, 1460
Sse9I	AATT	8 cut(s)	128, 219, 423, 603, 1137, 1353, 1440, 1909
SsiI	CCGC	3 cut(s)	905, 1461, 1791
SspMI	CTAG	4 cut(s)	197, 1227, 1896, 1921
SstI	GAGCTC	1 cut(s)	1716
StyD4I	CCNGG	3 cut(s)	138, 172, 712
StyI	CCWWGG	3 cut(s)	404, 1584, 1895
TaaI	ACNGT	2 cut(s)	1672, 1746
TaiI	ACGT	3 cut(s)	627, 871, 1778
TaqI	TCGA	3 cut(s)	430, 940, 1749
TasI	AATT	8 cut(s)	128, 219, 423, 603, 1137, 1353, 1440, 1909
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	1463
TfiI	GAWTC	3 cut(s)	117, 1316, 1358
Tru1I	TTAA	4 cut(s)	18, 645, 1484, 1554
Tru9I	TTAA	4 cut(s)	18, 645, 1484, 1554
TscAI	CASTG	2 cut(s)	987, 1675
TspDTI	ATGAA	7 cut(s)	141, 762, 912, 1083, 1350, 1410, 1485
TspRI	CASTG	2 cut(s)	987, 1675
Van91I	CCANNNNNTGG	1 cut(s)	453
VpaK11BI	GGWCC	2 cut(s)	179, 1617
XapI	RAATTY	2 cut(s)	1137, 1909
XceI	RCATGY	3 cut(s)	964, 1456, 1460
XmaJI	CCTAGG	1 cut(s)	1895
XmnI	GAANNNNTTC	2 cut(s)	330, 1273
XspI	CTAG	4 cut(s)	197, 1227, 1896, 1921
Zsp2I	ATGCAT	2 cut(s)	1458, 1537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.