Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Forward (+)

29239484 .. 29242556

Gene Structure 3073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G015410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGTGGGATTCAGAGACTGAGTCTGTTGGAGGCAGAGATTATGGCAATGGAGTTCTTGGTTTAAGCAAGCAGAGTGTTAAGACTGATGGGTTTGAGCTAAAAGGCAATTCTTGGTATGTTGCAACTGATATCTCAAGTGACCTGTTGGTTCAAGTTGGACAAGTCAATTTTCACTTGCATAAGTATCCCCTGCTGTCAAGGAGTGGAAAGATCAACAGAATCATGTATGAATTACGAGACCCGGACTTGAGTAAGATTGTTTTGGATGACCTTCCTGGTGGACCCGAGTCTTTTGAGCTAGCTGCAAAGTTCTGCTATGGAATTGCTGTTGATCTTACAGCAGCCAATATATCAGGCCTTAGATGTGCTGCAGAGTTCCTTGAAATGACAGAAGACTTGGAAGAAGGCAATCTTATTTTCAAAACCGAAGCATTTCTCAGCTATGTGGTTTTGTCCTCGTGGAGAGACTCCATAGTGGTGTTGAAAAGTTGTGAGAAGCTCTCACCATGGGCTGAAAACCTCCAAATTGTTCGAAGATGTAGTGAGTCCATTGCTTGGAAAGCTTGTGCCAATCCAAAAGGGATACGATGGACATACACCGGTAAGCCTCCAAAAGTTTCAAGCCCAACTTGGAATGACATGAAAGACTCAAGTCCAAGTAGAAACCAGCAAGTTCCTCCTGATTGGTGGTTTGAGGATGCTTCAATTCTTCGCATTGACCATTACGTCAGGGTTATTACTGCTATTAAGGTAAAGGGGATGAGATTTGAACTGATTGGAGCTGCAATAATGCACTATGCAGCTAAATGGCTCCCTGGTATGATAACTGATGGCTCGGGGGCAGCTGATGAAGGAAGCAACGCCAGCAATAGTAATACTGGTAATACTGGGAGCAGATGGAAGGGTGGACTCCACCTGATTGTGGCTGGAACTAAAGATGAGCCTTCACCTGTTCAGGCCAAAGATCAACGTATGATCATTGAGAGCCTTATTAGCATTATTCCTCCGCAGAAGGATACTGTTTCATGCAGCTTCCTTCTTCGACTTTTGAGAATGGCAAACATGTTGAAAGTAGCACCTGCACTGGTTACAGAGTTGGAAAAACGGGTGGGAATGCAGTTCGAACAGGCTACATTGGCAGATCTTCTTATTCCTTCTTTCAATAAGAATGAAACTATGTATGATGTGGATCTTGTTCAGAGGCTTCTGGAGCATTTTCTTGTTCAAGAACAGACTGAAATTTCAAGTCCAAGCCAACAATCTTTTATTGAAAAACACTACGATGGAACTCAAAGGGGTACAGGCCCAAATGCTAAGATGAGGGTAGCTAGGCTTGTTGATAGTTATCTTACAGAGGTGTCAAGAGATAGGAGTCTTTCCCTAACAAAGTTTCAGGTACTGGCAGAAGCTTTGCCTGAATCTGCAAGAATATGTGATGATGGACTTTATAGAGCAATTGATTCATATCTCAAGGCCCATCCAACACTCTCTGAGCATGAAAGGAAGAGGCTCTGCAGGGTGATGGATTGCCAAAAGCTATCAATTGATGCTTGCATGCATGCCGCACAAAATGAAAGGCTCCCATTAAGAGTGGTGGTGCAAGTCCTTTTCTCTGAACAAGTGAAGATAAGCAATGCATTAGCTAACAATGCCCTTAAAGAAGCCGGAGACTCTCACTATCAGCCCATGGTTTCAAATCGGAAAACATTACTTGAAGGGACCCCACAATCCTTCCAAGAAGGATGGGCAGCAGCTAAGAAGGACATCAACACTGTAAAGTTTGAACTGGAGAGCGTAAAAGCCAAGTACCTTGAGCTCCAGAATGACATGGAAAACTTACAGCGACAGTTCGAAAAGATGTCAAAGCAGAAACACACGTCGGCATGGAGCAGCGGGTGGAAGAAACTCAGCAAACTCACTAAGACTACAACTTTTGAGAACCAGAACATTGGGCCTGAGCATCCATCAGCTGCTGCTGAACAGACAACAAAAACACCTAGGAGGTGGAGGAATTCCATTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

674

Amino Acids

75.62

Weight (kDa)

7.57

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	228 - 518	7.1e-99	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1087
AasI	GACNNNNNNGTC	1 cut(s)	725
Acc36I	ACCTGC	1 cut(s)	1087
AccB7I	CCANNNNNTGG	1 cut(s)	555
AciI	CCGC	3 cut(s)	1007, 1563, 1893
AclWI	GGATC	1 cut(s)	1197
AcsI	RAATTY	2 cut(s)	1239, 2011
AfaI	GTAC	3 cut(s)	1300, 1398, 1808
AfiI	CCNNNNNNNGG	2 cut(s)	555, 922
AflIII	ACRYGT	2 cut(s)	1062, 1875
AgeI	ACCGGT	1 cut(s)	599
AjiI	CACGTC	1 cut(s)	1878
AjnI	CCWGG	2 cut(s)	274, 814
Alw21I	GWGCWC	1 cut(s)	1818
Alw26I	GTCTC	4 cut(s)	8, 231, 459, 1662
AlwI	GGATC	1 cut(s)	1197
AlwNI	CAGNNNCTG	3 cut(s)	17, 1399, 1973
Ama87I	CYCGRG	2 cut(s)	284, 835
AoxI	GGCC	5 cut(s)	355, 957, 1303, 1473, 1952
ApoI	RAATTY	2 cut(s)	1239, 2011
AsiGI	ACCGGT	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	432
AspA2I	CCTAGG	1 cut(s)	1997
AspS9I	GGNCC	5 cut(s)	281, 1304, 1474, 1719, 1952
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	495, 939, 1531
AsuII	TTCGAA	3 cut(s)	532, 1122, 1851
AsuNHI	GCTAGC	1 cut(s)	298
AvaI	CYCGRG	2 cut(s)	284, 835
AvaII	GGWCC	2 cut(s)	281, 1719
AvrII	CCTAGG	1 cut(s)	1997
BanII	GRGCYC	1 cut(s)	1818
BauI	CACGAG	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	1818
BciT130I	CCWGG	2 cut(s)	276, 816
BciVI	GTATCC	3 cut(s)	195, 576, 1009
BclI	TGATCA	1 cut(s)	975
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	4 cut(s)	8, 231, 459, 1662
BfaI	CTAG	4 cut(s)	299, 1329, 1998, 2023
BfmI	CTRYAG	2 cut(s)	369, 1513
BfuAI	ACCTGC	1 cut(s)	1087
BfuI	GTATCC	3 cut(s)	195, 576, 1009
BglII	AGATCT	1 cut(s)	1141
BlnI	CCTAGG	1 cut(s)	1997
Bme1390I	CCNGG	3 cut(s)	242, 276, 816
Bme18I	GGWCC	2 cut(s)	281, 1719
BmeT110I	CYCGRG	2 cut(s)	284, 835
BmgBI	CACGTC	1 cut(s)	1878
BmgT120I	GGNCC	5 cut(s)	281, 1304, 1474, 1719, 1952
BmiI	GGNNCC	5 cut(s)	283, 812, 1580, 1720, 1721
BmrFI	CCNGG	3 cut(s)	242, 276, 816
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	3 cut(s)	688, 1537, 1969
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	897
BoxI	GACNNNNGTC	2 cut(s)	286, 651
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	3 cut(s)	1229, 1802, 1808
Bpu10I	CCTNAGC	1 cut(s)	1956
Bpu14I	TTCGAA	3 cut(s)	532, 1122, 1851
BpuEI	CTTGAG	5 cut(s)	118, 268, 634, 1454, 1832
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	3 cut(s)	1188, 1344, 1464
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	4 cut(s)	506, 814, 1686, 1997
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	2 cut(s)	555, 922
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	5 cut(s)	883, 892, 1089, 1404, 1791
Bse3DI	GCAATG	3 cut(s)	52, 549, 1639
Bse8I	GATNNNNATC	3 cut(s)	1188, 1344, 1464
BseBI	CCWGG	2 cut(s)	276, 816
BseDI	CCNNGG	4 cut(s)	506, 814, 1686, 1997
BseGI	GGATG	6 cut(s)	271, 703, 765, 1477, 1748, 1960
BseJI	GATNNNNATC	3 cut(s)	1188, 1344, 1464
BseLI	CCNNNNNNNGG	2 cut(s)	555, 922
BseMI	GCAATG	3 cut(s)	52, 549, 1639
BseMII	CTCAG	5 cut(s)	9, 451, 1482, 1921, 1947
BseNI	ACTGG	5 cut(s)	883, 892, 1089, 1404, 1791
BsgI	GTGCAG	1 cut(s)	1065
BshFI	GGCC	5 cut(s)	357, 959, 1305, 1475, 1954
BshTI	ACCGGT	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	1818
BsiHKCI	CYCGRG	2 cut(s)	284, 835
BsiSI	CCGG	3 cut(s)	242, 600, 1665
BslFI	GGGAC	1 cut(s)	1732
BslI	CCNNNNNNNGG	2 cut(s)	555, 922
BsmAI	GTCTC	4 cut(s)	8, 231, 459, 1662
BsmFI	GGGAC	1 cut(s)	1732
BsmI	GAATGC	1 cut(s)	1119
BsnI	GGCC	5 cut(s)	357, 959, 1305, 1475, 1954
Bso31I	GGTCTC	1 cut(s)	231
BsoBI	CYCGRG	2 cut(s)	284, 835
Bsp119I	TTCGAA	3 cut(s)	532, 1122, 1851
Bsp1286I	GDGCHC	1 cut(s)	1818
Bsp143I	GATC	6 cut(s)	210, 331, 964, 975, 1141, 1189
Bsp19I	CCATGG	2 cut(s)	506, 1686
BspACI	CCGC	3 cut(s)	1007, 1563, 1893
BspANI	GGCC	5 cut(s)	357, 959, 1305, 1475, 1954
BspCNI	CTCAG	5 cut(s)	10, 450, 1483, 1920, 1948
BspLI	GGNNCC	5 cut(s)	283, 812, 1580, 1720, 1721
BspMAI	CTGCAG	2 cut(s)	373, 1517
BspMI	ACCTGC	1 cut(s)	1087
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	1197
BspT104I	TTCGAA	3 cut(s)	532, 1122, 1851
BspTNI	GGTCTC	1 cut(s)	231
BsrDI	GCAATG	3 cut(s)	52, 549, 1639
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	5 cut(s)	883, 892, 1089, 1404, 1791
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	4 cut(s)	506, 814, 1686, 1997
BssMI	GATC	6 cut(s)	210, 331, 964, 975, 1141, 1189
BssSI	CACGAG	1 cut(s)	457
BssT1I	CCWWGG	3 cut(s)	506, 1686, 1997
Bst2BI	CACGAG	1 cut(s)	457
Bst2UI	CCWGG	2 cut(s)	276, 816
Bst4CI	ACNGT	3 cut(s)	1021, 1774, 1848
Bst6I	CTCTTC	1 cut(s)	1499
BstBI	TTCGAA	3 cut(s)	532, 1122, 1851
BstC8I	GCNNGC	6 cut(s)	68, 300, 865, 1552, 1556, 1560
BstDEI	CTNAG	9 cut(s)	18, 359, 437, 1314, 1491, 1755, 1907, 1920, 1956
BstDSI	CCRYGG	2 cut(s)	506, 1686
BstF5I	GGATG	6 cut(s)	271, 703, 765, 1477, 1748, 1960
BstKTI	GATC	6 cut(s)	213, 334, 967, 978, 1144, 1192
BstMAI	GTCTC	4 cut(s)	8, 231, 459, 1662
BstMBI	GATC	6 cut(s)	210, 331, 964, 975, 1141, 1189
BstMWI	GCNNNNNNNGC	6 cut(s)	560, 864, 993, 1136, 1210, 1649
BstNI	CCWGG	2 cut(s)	276, 816
BstNSI	RCATGY	3 cut(s)	1066, 1558, 1562
BstPAI	GACNNNNGTC	2 cut(s)	286, 651
BstSCI	CCNGG	3 cut(s)	240, 274, 814
BstSFI	CTRYAG	2 cut(s)	369, 1513
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	1141, 1189
BstXI	CCANNNNNNTGG	1 cut(s)	1949
BstYI	RGATCY	2 cut(s)	1141, 1189
BsuI	GTATCC	3 cut(s)	195, 576, 1009
BsuRI	GGCC	5 cut(s)	357, 959, 1305, 1475, 1954
BtgI	CCRYGG	2 cut(s)	506, 1686
BtrI	CACGTC	1 cut(s)	1878
BtsCI	GGATG	6 cut(s)	271, 703, 765, 1477, 1748, 1960
BtsIMutI	CAGTG	2 cut(s)	1082, 1770
BveI	ACCTGC	1 cut(s)	1087
Cac8I	GCNNGC	6 cut(s)	68, 300, 865, 1552, 1556, 1560
CaiI	CAGNNNCTG	3 cut(s)	17, 1399, 1973
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	5 cut(s)	281, 1304, 1474, 1719, 1952
Csp6I	GTAC	3 cut(s)	1299, 1397, 1807
CspAI	ACCGGT	1 cut(s)	599
CviQI	GTAC	3 cut(s)	1299, 1397, 1807
DdeI	CTNAG	9 cut(s)	18, 359, 437, 1314, 1491, 1755, 1907, 1920, 1956
DpnI	GATC	6 cut(s)	212, 333, 966, 977, 1143, 1191
DpnII	GATC	6 cut(s)	210, 331, 964, 975, 1141, 1189
DrdI	GACNNNNNNGTC	1 cut(s)	725
DseDI	GACNNNNNNGTC	1 cut(s)	725
Eam1104I	CTCTTC	1 cut(s)	1499
EarI	CTCTTC	1 cut(s)	1499
Ecl136II	GAGCTC	1 cut(s)	1816
Eco130I	CCWWGG	3 cut(s)	506, 1686, 1997
Eco147I	AGGCCT	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	1818
Eco31I	GGTCTC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	281, 1719
Eco53kI	GAGCTC	1 cut(s)	1816
Eco88I	CYCGRG	2 cut(s)	284, 835
EcoICRI	GAGCTC	1 cut(s)	1816
EcoO109I	RGGNCCY	1 cut(s)	1719
EcoRI	GAATTC	1 cut(s)	2011
EcoRII	CCWGG	2 cut(s)	274, 814
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	506, 1686, 1997
EcoT22I	ATGCAT	2 cut(s)	1560, 1639
EcoT38I	GRGCYC	1 cut(s)	1818
ErhI	CCWWGG	3 cut(s)	506, 1686, 1997
FalI	AAGNNNNNCTT	4 cut(s)	396, 428, 613, 645
FaqI	GGGAC	1 cut(s)	1732
FauI	CCCGC	1 cut(s)	1886
FbaI	TGATCA	1 cut(s)	975
FokI	GGATG	6 cut(s)	278, 710, 772, 1464, 1755, 1947
FriOI	GRGCYC	1 cut(s)	1818
FspBI	CTAG	4 cut(s)	299, 1329, 1998, 2023
GsuI	CTGGAG	3 cut(s)	1229, 1802, 1808
HaeIII	GGCC	5 cut(s)	357, 959, 1305, 1475, 1954
HapII	CCGG	3 cut(s)	242, 600, 1665
HindIII	AAGCTT	2 cut(s)	561, 1407
HpaII	CCGG	3 cut(s)	242, 600, 1665
HphI	GGTGA	3 cut(s)	495, 939, 1531
Hpy166II	GTNNAC	2 cut(s)	281, 908
Hpy188I	TCNGA	5 cut(s)	13, 1200, 1492, 1615, 1701
Hpy188III	TCNNGA	5 cut(s)	680, 1208, 1226, 1362, 1819
Hpy8I	GTNNAC	2 cut(s)	281, 908
Hpy99I	CGWCG	1 cut(s)	1882
HpyCH4III	ACNGT	3 cut(s)	1021, 1774, 1848
HpyCH4IV	ACGT	3 cut(s)	726, 970, 1877
HpyF10VI	GCNNNNNNNGC	6 cut(s)	560, 864, 993, 1136, 1210, 1649
HpyF3I	CTNAG	9 cut(s)	18, 359, 437, 1314, 1491, 1755, 1907, 1920, 1956
HpySE526I	ACGT	3 cut(s)	726, 970, 1877
KflI	GGGWCCC	1 cut(s)	1719
Ksp22I	TGATCA	1 cut(s)	975
Kzo9I	GATC	6 cut(s)	210, 331, 964, 975, 1141, 1189
LmnI	GCTCC	7 cut(s)	779, 816, 891, 1210, 1584, 1821, 1887
LweI	GCATC	3 cut(s)	688, 1537, 1969
MaeI	CTAG	4 cut(s)	299, 1329, 1998, 2023
MaeII	ACGT	3 cut(s)	726, 970, 1877
MaeIII	GTNAC	2 cut(s)	137, 1087
MalI	GATC	6 cut(s)	212, 333, 966, 977, 1143, 1191
MboI	GATC	6 cut(s)	210, 331, 964, 975, 1141, 1189
MboII	GAAGA	9 cut(s)	404, 413, 546, 701, 1031, 1136, 1516, 1636, 1912
MfeI	CAATTG	2 cut(s)	1455, 1542
MflI	RGATCY	2 cut(s)	1141, 1189
MhlI	GDGCHC	1 cut(s)	1818
MlyI	GAGTC	8 cut(s)	29, 296, 461, 554, 641, 903, 1381, 1664
MmeI	TCCRAC	4 cut(s)	7, 136, 1077, 1505
Mph1103I	ATGCAT	2 cut(s)	1560, 1639
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	5 cut(s)	62, 78, 747, 1586, 1656
MslI	CAYNNNNRTG	2 cut(s)	476, 1281
MspA1I	CMGCKG	3 cut(s)	845, 1893, 1970
MspI	CCGG	3 cut(s)	242, 600, 1665
MspR9I	CCNGG	3 cut(s)	242, 276, 816
MunI	CAATTG	2 cut(s)	1455, 1542
Mva1269I	GAATGC	1 cut(s)	1119
MvaI	CCWGG	2 cut(s)	276, 816
MwoI	GCNNNNNNNGC	6 cut(s)	560, 864, 993, 1136, 1210, 1649
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	2 cut(s)	506, 1686
NdeII	GATC	6 cut(s)	210, 331, 964, 975, 1141, 1189
NheI	GCTAGC	1 cut(s)	298
NlaIV	GGNNCC	5 cut(s)	283, 812, 1580, 1720, 1721
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	2 cut(s)	1560, 1639
NspI	RCATGY	3 cut(s)	1066, 1558, 1562
NspV	TTCGAA	3 cut(s)	532, 1122, 1851
PaeI	GCATGC	2 cut(s)	1558, 1562
PaqCI	CACCTGC	1 cut(s)	1087
PceI	AGGCCT	1 cut(s)	357
PciI	ACATGT	1 cut(s)	1062
PctI	GAATGC	1 cut(s)	1119
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	8, 219, 1418, 1460
PflFI	GACNNNGTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	555
PinAI	ACCGGT	1 cut(s)	599
PleI	GAGTC	8 cut(s)	28, 295, 461, 553, 641, 903, 1380, 1664
PpsI	GAGTC	8 cut(s)	28, 295, 461, 553, 641, 903, 1380, 1664
PpuMI	RGGWCCY	1 cut(s)	1719
PscI	ACATGT	1 cut(s)	1062
PshAI	GACNNNNGTC	2 cut(s)	286, 651
Psp124BI	GAGCTC	1 cut(s)	1818
Psp5II	RGGWCCY	1 cut(s)	1719
Psp6I	CCWGG	2 cut(s)	274, 814
PspGI	CCWGG	2 cut(s)	274, 814
PspN4I	GGNNCC	5 cut(s)	283, 812, 1580, 1720, 1721
PspPI	GGNCC	5 cut(s)	281, 1304, 1474, 1719, 1952
PspPPI	RGGWCCY	1 cut(s)	1719
PstI	CTGCAG	2 cut(s)	373, 1517
PstNI	CAGNNNCTG	3 cut(s)	17, 1399, 1973
PsuI	RGATCY	2 cut(s)	1141, 1189
PsyI	GACNNNGTC	1 cut(s)	19
PvuII	CAGCTG	2 cut(s)	845, 1970
RsaI	GTAC	3 cut(s)	1300, 1398, 1808
RsaNI	GTAC	3 cut(s)	1299, 1397, 1807
RseI	CAYNNNNRTG	2 cut(s)	476, 1281
SacI	GAGCTC	1 cut(s)	1818
SaqAI	TTAA	5 cut(s)	62, 78, 747, 1586, 1656
Sau3AI	GATC	6 cut(s)	210, 331, 964, 975, 1141, 1189
Sau96I	GGNCC	5 cut(s)	281, 1304, 1474, 1719, 1952
SchI	GAGTC	8 cut(s)	29, 296, 461, 554, 641, 903, 1381, 1664
ScrFI	CCNGG	3 cut(s)	242, 276, 816
SduI	GDGCHC	1 cut(s)	1818
SfaNI	GCATC	3 cut(s)	688, 1537, 1969
SfcI	CTRYAG	2 cut(s)	369, 1513
SfuI	TTCGAA	3 cut(s)	532, 1122, 1851
SinI	GGWCC	2 cut(s)	281, 1719
SmiMI	CAYNNNNRTG	2 cut(s)	476, 1281
SmlI	CTYRAG	5 cut(s)	133, 247, 649, 1469, 1811
SmoI	CTYRAG	5 cut(s)	133, 247, 649, 1469, 1811
SphI	GCATGC	2 cut(s)	1558, 1562
SseBI	AGGCCT	1 cut(s)	357
SsiI	CCGC	3 cut(s)	1007, 1563, 1893
SspMI	CTAG	4 cut(s)	299, 1329, 1998, 2023
SstI	GAGCTC	1 cut(s)	1818
StuI	AGGCCT	1 cut(s)	357
StyD4I	CCNGG	3 cut(s)	240, 274, 814
StyI	CCWWGG	3 cut(s)	506, 1686, 1997
TaaI	ACNGT	3 cut(s)	1021, 1774, 1848
TaiI	ACGT	3 cut(s)	729, 973, 1880
TaqI	TCGA	4 cut(s)	532, 1042, 1122, 1851
TauI	GCSGC	1 cut(s)	1565
TfiI	GAWTC	4 cut(s)	8, 219, 1418, 1460
Tru1I	TTAA	5 cut(s)	62, 78, 747, 1586, 1656
Tru9I	TTAA	5 cut(s)	62, 78, 747, 1586, 1656
TscAI	CASTG	2 cut(s)	1089, 1777
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	8 cut(s)	243, 656, 864, 1014, 1185, 1452, 1512, 1587
TspRI	CASTG	2 cut(s)	1089, 1777
Tth111I	GACNNNGTC	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	281, 1719
XapI	RAATTY	2 cut(s)	1239, 2011
XceI	RCATGY	3 cut(s)	1066, 1558, 1562
XmaJI	CCTAGG	1 cut(s)	1997
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	4 cut(s)	299, 1329, 1998, 2023
Zsp2I	ATGCAT	2 cut(s)	1560, 1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.