Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Forward (+)

33722710 .. 33725700

Gene Structure 2991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG316000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGTGGGAATCAGAGACTGAGTCAGTTGGAGGCAGAGATTATGGCAATGGAGATTTTAGTTTAACCAAGCAGAGTGTTAAGAATGATGGGTTTGAACTAAAAGGCAATTCATGGTATGTTGCAACTGATATCCCAAGTGACCTATTGGTTCAAGTTGGAGAAGTCAATTTTCACTTGCATAAGTATCCCTTGCTGTCAAGGAGTGGAAAGATGAACAGAATCATGTATGAATTACGAGACCCGGACTTAAGTAAGATGGTTTTGGATGACCTTCCTGGGGGACCTGAGGCCTTTGAGCTAGCTGCAAAGTTCTGCTATGGCATTTCTGTGGATCTGACAGCAGCCAACATTTCAGGCCTTAGATGTGCTGCAGAGTTCCTTGAAATGACAGAGGACTTGGAAGAAGGCAATCTTATTTTCAAAACCGAAGCATTTCTCAGCTATGTGGTTTTGTCCTCATGGAGAGACTCCATATTAGTGTTGAAAAGTTGCGAGAAGCTCTCACCGTGGGCTGAAAACCTTCAAATTGTTCGGAGATGCAGCGAGTCTATTGCTTGGAAAGCTTGTGCCAATCCAAAAGGGATAAGATGGCCATATACTGGTAGTAAGCTAGCTCCAAAAGTTTCAAGCCCAAATTGGAGTGACGTGAAGGACTCAAGTCCAAGTGGAAACCAGCTGCAAGTTCCTTCAGATTGGTGGTTTGAAGATGCTTCAATTCTTCGGATTGATCACTATGTCAAGGTTATTACTGCAATCAAGGTGAAGGGGATGAGATATGAACTGCTTGGAGCTGCAATAATGCACTATGCAGCTAAATGGCTCCCTATTATGATAAGTGAGCATGGCTCTGGGTTAACAGCTGATGAAGGAAGCAACAGCAGCAGTAGCAGTGGAAGCAGTTGGAAGGGTGGACTTCACATGATCGTGGCAGGAACTAAAGATAATGAGTCTTCAGCTGTTCAGGCCAAAGGTCAACGGATGATCATTGAGAGCCTTATTAGCATAATTCCACCACAGAAGGACAGTGTCTCATGTAGCTTCCTTCTTCGGCTTCTGAGAATGGCAAACATGTTGAAAGTAGCACCTGCACTGGTTACTGAGTTGGAGAAACGGGTGGGAATGCAGTTCGAACAGGCTACATTGGCGGATCTTCTCATTCCGTCTTGCAACAAAAGCGAAAGTATGTATGATGTGGATCTTGTCCAGAGGCTTCTGGAGCATTTTCTTGTTCAAGAACAGACTGAAATGTCAAGTCCAAGCCACCAATCTTTCATTGAAAAACACTATGAAAGGGGCACAGGCCCAAATGCTAAGATGAGGGTAGCCAAGCTTGTTGATAGTTATCTTACAGAGGTGTCAAGAGATAGAAGCCTTTCCCTAACAAAGTTTCAGGTACTCGCAGAAGCTTTGCCTGAATCTGCAAGGACCTGTGATGATGGACTTTATAGAGCAATTGATTCCTATCTCAAGGCTCATCCAACACTCTCTGAGCACGAAAGAAAGAGGCTATGCCGGGTAATGGATTGCCAAAAGCTATCGATTGATGCTTGCATGCATGCTGCACAAAATGAAAGGCTCCCATTAAGAGTGGTGGTGCAAGTTCTTTTCTCTGAGCAAGTCAAAATAAGCAATGCATTGGCCAACAATGCCCTTAATGAAGCCGGAGGAGACTCTAACTATCAGCCAATGATTCCAAATCGGAAAACACTACTCGAAGGGACCCCGCAATCCTTCCAAGAAGGATGGGCAGCAGCTAAAAAGGACATTAACACTGTAAAGTTTGAACTGGAGAGTGTAAAAGCAAAGTACCTTGATCTCCAAAATTCCATGGAAAACTTGCAGAGACAGTTCGATAAGATGACCTCAAAGCAGAAACATACATCAGCTTGGAGCAGCGGATGGAAGAAACTCGGCAAACTCACTAAGACTACAATGTTCGAGAATCAGAACAGTGGACCGGAGACTCCAACAGCGGCTGGTCCGGAGCAGACAAGAAAGACTCCTAGGAGGTGGAGGAATTCCATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

676

Amino Acids

75.61

Weight (kDa)

6.91

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	231 - 517	7.8e-99	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1093
AasI	GACNNNNNNGTC	1 cut(s)	1246
Acc36I	ACCTGC	1 cut(s)	1093
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccIII	TCCGGA	1 cut(s)	1981
AciI	CCGC	4 cut(s)	1145, 1724, 1896, 1973
AclWI	GGATC	3 cut(s)	339, 1155, 1203
AcoI	YGGCCR	2 cut(s)	590, 1638
AcsI	RAATTY	2 cut(s)	1822, 2017
AcuI	CTGAAG	2 cut(s)	672, 936
AfaI	GTAC	2 cut(s)	1395, 1808
AfiI	CCNNNNNNNGG	3 cut(s)	277, 599, 1519
AflII	CTTAAG	1 cut(s)	247
AflIII	ACRYGT	1 cut(s)	1068
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	274
Alw21I	GWGCWC	1 cut(s)	1494
Alw26I	GTCTC	7 cut(s)	8, 231, 459, 1033, 1662, 1837, 1955
AlwI	GGATC	3 cut(s)	339, 1155, 1203
AlwNI	CAGNNNCTG	2 cut(s)	17, 1976
Aor13HI	TCCGGA	1 cut(s)	1981
AoxI	GGCC	6 cut(s)	288, 355, 590, 963, 1300, 1638
ApoI	RAATTY	2 cut(s)	1822, 2017
Asp700I	GAANNNNTTC	3 cut(s)	432, 519, 1372
AspA2I	CCTAGG	1 cut(s)	2003
AspS9I	GGNCC	6 cut(s)	281, 1301, 1425, 1719, 1955, 1979
AsuC2I	CCSGG	2 cut(s)	242, 1514
AsuHPI	GGTGA	2 cut(s)	495, 772
AsuII	TTCGAA	1 cut(s)	1128
AsuNHI	GCTAGC	2 cut(s)	298, 610
AvaII	GGWCC	5 cut(s)	281, 1425, 1719, 1955, 1979
AvrII	CCTAGG	1 cut(s)	2003
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	1298
BalI	TGGCCA	2 cut(s)	592, 1640
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	1 cut(s)	1494
BccI	CCATC	6 cut(s)	80, 250, 582, 1430, 1737, 1893
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	195
BclI	TGATCA	2 cut(s)	727, 981
BcnI	CCSGG	2 cut(s)	242, 1514
BcoDI	GTCTC	7 cut(s)	8, 231, 459, 1033, 1662, 1837, 1955
BfaI	CTAG	3 cut(s)	299, 611, 2004
BfmI	CTRYAG	1 cut(s)	369
BfrI	CTTAAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	1093
BfuI	GTATCC	1 cut(s)	195
BlnI	CCTAGG	1 cut(s)	2003
Bme1390I	CCNGG	3 cut(s)	242, 276, 1514
Bme18I	GGWCC	5 cut(s)	281, 1425, 1719, 1955, 1979
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	6 cut(s)	281, 1301, 1425, 1719, 1955, 1979
BmiI	GGNNCC	5 cut(s)	282, 821, 1577, 1720, 1721
BmrFI	CCNGG	3 cut(s)	242, 276, 1514
BmsI	GCATC	3 cut(s)	527, 697, 1534
BmtI	GCTAGC	2 cut(s)	302, 614
BoxI	GACNNNNGTC	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	942
BplI	GAGNNNNNCTC	4 cut(s)	485, 517, 830, 862
BpmI	CTGGAG	2 cut(s)	1235, 1808
Bpu14I	TTCGAA	1 cut(s)	1128
BpuEI	CTTGAG	2 cut(s)	640, 1451
BpuMI	CCSGG	2 cut(s)	242, 1514
Bsa29I	ATCGAT	1 cut(s)	1538
BsaBI	GATNNNNATC	3 cut(s)	1194, 1341, 1461
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	4 cut(s)	275, 506, 1827, 2003
BsaWI	WCCGGW	2 cut(s)	1957, 1981
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 599, 1519
Bse1I	ACTGG	3 cut(s)	604, 1095, 1791
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	2 cut(s)	52, 1636
Bse8I	GATNNNNATC	3 cut(s)	1194, 1341, 1461
BseAI	TCCGGA	1 cut(s)	1981
BseBI	CCWGG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	1538
BseDI	CCNNGG	4 cut(s)	275, 506, 1827, 2003
BseGI	GGATG	6 cut(s)	271, 774, 984, 1474, 1748, 1904
BseJI	GATNNNNATC	3 cut(s)	1194, 1341, 1461
BseLI	CCNNNNNNNGG	3 cut(s)	277, 599, 1519
BseMI	GCAATG	2 cut(s)	52, 1636
BseMII	CTCAG	7 cut(s)	9, 276, 451, 1046, 1089, 1479, 1602
BseNI	ACTGG	3 cut(s)	604, 1095, 1791
BseRI	GAGGAG	1 cut(s)	1680
BseSI	GKGCMC	1 cut(s)	1298
BsgI	GTGCAG	2 cut(s)	1071, 1545
BshFI	GGCC	6 cut(s)	290, 357, 592, 965, 1302, 1640
BshVI	ATCGAT	1 cut(s)	1538
BsiHKAI	GWGCWC	1 cut(s)	1494
BsiSI	CCGG	5 cut(s)	242, 1513, 1662, 1958, 1982
BslFI	GGGAC	2 cut(s)	294, 1732
BslI	CCNNNNNNNGG	3 cut(s)	277, 599, 1519
BsmAI	GTCTC	7 cut(s)	8, 231, 459, 1033, 1662, 1837, 1955
BsmFI	GGGAC	2 cut(s)	294, 1732
BsmI	GAATGC	1 cut(s)	1125
BsnI	GGCC	6 cut(s)	290, 357, 592, 965, 1302, 1640
Bso31I	GGTCTC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	1128
Bsp1286I	GDGCHC	2 cut(s)	1298, 1494
Bsp13I	TCCGGA	1 cut(s)	1981
Bsp143I	GATC	7 cut(s)	331, 727, 921, 981, 1147, 1195, 1813
Bsp19I	CCATGG	1 cut(s)	1827
BspACI	CCGC	4 cut(s)	1145, 1724, 1896, 1973
BspANI	GGCC	6 cut(s)	290, 357, 592, 965, 1302, 1640
BspCNI	CTCAG	7 cut(s)	10, 277, 450, 1047, 1090, 1480, 1603
BspDI	ATCGAT	1 cut(s)	1538
BspEI	TCCGGA	1 cut(s)	1981
BspLI	GGNNCC	5 cut(s)	282, 821, 1577, 1720, 1721
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	1093
BspOI	GCTAGC	2 cut(s)	302, 614
BspPI	GGATC	3 cut(s)	339, 1155, 1203
BspT104I	TTCGAA	1 cut(s)	1128
BspTI	CTTAAG	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	231
BsrDI	GCAATG	2 cut(s)	52, 1636
BsrI	ACTGG	3 cut(s)	604, 1095, 1791
BssECI	CCNNGG	4 cut(s)	275, 506, 1827, 2003
BssMI	GATC	7 cut(s)	331, 727, 921, 981, 1147, 1195, 1813
BssT1I	CCWWGG	2 cut(s)	1827, 2003
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	5 cut(s)	507, 1025, 1774, 1848, 1952
BstAFI	CTTAAG	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	1128
BstC8I	GCNNGC	5 cut(s)	300, 612, 1549, 1553, 1557
BstDSI	CCRYGG	2 cut(s)	506, 1827
BstF5I	GGATG	6 cut(s)	271, 774, 984, 1474, 1748, 1904
BstKTI	GATC	7 cut(s)	334, 730, 924, 984, 1150, 1198, 1816
BstMAI	GTCTC	7 cut(s)	8, 231, 459, 1033, 1662, 1837, 1955
BstMBI	GATC	7 cut(s)	331, 727, 921, 981, 1147, 1195, 1813
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	3 cut(s)	1072, 1555, 1559
BstPAI	GACNNNNGTC	1 cut(s)	657
BstSCI	CCNGG	3 cut(s)	240, 274, 1512
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	1298
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	3 cut(s)	331, 1147, 1195
BstYI	RGATCY	3 cut(s)	331, 1147, 1195
Bsu15I	ATCGAT	1 cut(s)	1538
Bsu36I	CCTNAGG	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	6 cut(s)	290, 357, 592, 965, 1302, 1640
BsuTUI	ATCGAT	1 cut(s)	1538
BtgI	CCRYGG	2 cut(s)	506, 1827
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	6 cut(s)	271, 774, 984, 1474, 1748, 1904
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	5 cut(s)	895, 1030, 1088, 1770, 1957
BveI	ACCTGC	1 cut(s)	1093
Cac8I	GCNNGC	5 cut(s)	300, 612, 1549, 1553, 1557
CaiI	CAGNNNCTG	2 cut(s)	17, 1976
Cfr13I	GGNCC	6 cut(s)	281, 1301, 1425, 1719, 1955, 1979
ClaI	ATCGAT	1 cut(s)	1538
Csp6I	GTAC	2 cut(s)	1394, 1807
CviQI	GTAC	2 cut(s)	1394, 1807
DpnI	GATC	7 cut(s)	333, 729, 923, 983, 1149, 1197, 1815
DpnII	GATC	7 cut(s)	331, 727, 921, 981, 1147, 1195, 1813
DrdI	GACNNNNNNGTC	1 cut(s)	1246
DseDI	GACNNNNNNGTC	1 cut(s)	1246
EaeI	YGGCCR	2 cut(s)	590, 1638
EciI	GGCGGA	1 cut(s)	1160
Eco130I	CCWWGG	2 cut(s)	1827, 2003
Eco147I	AGGCCT	2 cut(s)	290, 357
Eco31I	GGTCTC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	5 cut(s)	281, 1425, 1719, 1955, 1979
Eco57I	CTGAAG	2 cut(s)	672, 936
Eco81I	CCTNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	3 cut(s)	281, 1425, 1719
EcoRI	GAATTC	1 cut(s)	2017
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	1827, 2003
EcoT22I	ATGCAT	2 cut(s)	1557, 1636
ErhI	CCWWGG	2 cut(s)	1827, 2003
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 396, 428
FaqI	GGGAC	2 cut(s)	294, 1732
FauI	CCCGC	1 cut(s)	1731
FbaI	TGATCA	2 cut(s)	727, 981
FokI	GGATG	6 cut(s)	278, 781, 991, 1461, 1755, 1911
FspBI	CTAG	3 cut(s)	299, 611, 2004
GsuI	CTGGAG	2 cut(s)	1235, 1808
HaeIII	GGCC	6 cut(s)	290, 357, 592, 965, 1302, 1640
HapII	CCGG	5 cut(s)	242, 1513, 1662, 1958, 1982
HincII	GTYRAC	2 cut(s)	855, 974
HindII	GTYRAC	2 cut(s)	855, 974
HindIII	AAGCTT	3 cut(s)	561, 1328, 1404
HpaI	GTTAAC	1 cut(s)	855
HpaII	CCGG	5 cut(s)	242, 1513, 1662, 1958, 1982
HphI	GGTGA	2 cut(s)	495, 772
Hpy166II	GTNNAC	4 cut(s)	855, 911, 974, 1955
Hpy188III	TCNNGA	6 cut(s)	1204, 1214, 1232, 1359, 1939, 1982
Hpy8I	GTNNAC	4 cut(s)	855, 911, 974, 1955
HpyCH4III	ACNGT	5 cut(s)	507, 1025, 1774, 1848, 1952
HpyCH4IV	ACGT	1 cut(s)	645
HpySE526I	ACGT	1 cut(s)	645
KflI	GGGWCCC	1 cut(s)	1719
Kpn2I	TCCGGA	1 cut(s)	1981
Ksp22I	TGATCA	2 cut(s)	727, 981
KspAI	GTTAAC	1 cut(s)	855
Kzo9I	GATC	7 cut(s)	331, 727, 921, 981, 1147, 1195, 1813
LmnI	GCTCC	7 cut(s)	619, 788, 825, 1216, 1581, 1890, 1984
LweI	GCATC	3 cut(s)	527, 697, 1534
MaeI	CTAG	3 cut(s)	299, 611, 2004
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	3 cut(s)	137, 641, 1093
MalI	GATC	7 cut(s)	333, 729, 923, 983, 1149, 1197, 1815
MboI	GATC	7 cut(s)	331, 727, 921, 981, 1147, 1195, 1813
MboII	GAAGA	7 cut(s)	413, 710, 716, 942, 1037, 1142, 1915
MfeI	CAATTG	1 cut(s)	1452
MflI	RGATCY	3 cut(s)	331, 1147, 1195
MhlI	GDGCHC	2 cut(s)	1298, 1494
MlsI	TGGCCA	2 cut(s)	592, 1640
MluNI	TGGCCA	2 cut(s)	592, 1640
MlyI	GAGTC	8 cut(s)	29, 461, 554, 647, 956, 1664, 1957, 1993
MmeI	TCCRAC	6 cut(s)	7, 136, 881, 1083, 1502, 1991
Mox20I	TGGCCA	2 cut(s)	592, 1640
Mph1103I	ATGCAT	2 cut(s)	1557, 1636
MroI	TCCGGA	1 cut(s)	1981
MroXI	GAANNNNTTC	3 cut(s)	432, 519, 1372
MscI	TGGCCA	2 cut(s)	592, 1640
MseI	TTAA	7 cut(s)	62, 78, 248, 854, 1583, 1653, 1767
MslI	CAYNNNNRTG	3 cut(s)	326, 476, 923
Msp20I	TGGCCA	2 cut(s)	592, 1640
MspA1I	CMGCKG	5 cut(s)	676, 860, 956, 1896, 1973
MspCI	CTTAAG	1 cut(s)	247
MspI	CCGG	5 cut(s)	242, 1513, 1662, 1958, 1982
MspR9I	CCNGG	3 cut(s)	242, 276, 1514
MunI	CAATTG	1 cut(s)	1452
Mva1269I	GAATGC	1 cut(s)	1125
MvaI	CCWGG	1 cut(s)	276
NciI	CCSGG	2 cut(s)	242, 1514
NcoI	CCATGG	1 cut(s)	1827
NdeII	GATC	7 cut(s)	331, 727, 921, 981, 1147, 1195, 1813
NheI	GCTAGC	2 cut(s)	298, 610
NlaIV	GGNNCC	5 cut(s)	282, 821, 1577, 1720, 1721
NmeAIII	GCCGAG	1 cut(s)	1890
NmuCI	GTSAC	2 cut(s)	137, 641
NsiI	ATGCAT	2 cut(s)	1557, 1636
NspI	RCATGY	3 cut(s)	1072, 1555, 1559
NspV	TTCGAA	1 cut(s)	1128
PaeI	GCATGC	2 cut(s)	1555, 1559
PaqCI	CACCTGC	1 cut(s)	1093
PceI	AGGCCT	2 cut(s)	290, 357
PciI	ACATGT	1 cut(s)	1068
PctI	GAATGC	1 cut(s)	1125
PdmI	GAANNNNTTC	3 cut(s)	432, 519, 1372
PfeI	GAWTC	6 cut(s)	8, 219, 1415, 1457, 1690, 1942
PflFI	GACNNNGTC	2 cut(s)	19, 1025
PflMI	CCANNNNNTGG	1 cut(s)	599
PleI	GAGTC	8 cut(s)	28, 461, 553, 647, 955, 1664, 1957, 1993
PpsI	GAGTC	8 cut(s)	28, 461, 553, 647, 955, 1664, 1957, 1993
PpuMI	RGGWCCY	3 cut(s)	281, 1425, 1719
PscI	ACATGT	1 cut(s)	1068
PshAI	GACNNNNGTC	1 cut(s)	657
Psp5II	RGGWCCY	3 cut(s)	281, 1425, 1719
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	5 cut(s)	282, 821, 1577, 1720, 1721
PspPI	GGNCC	6 cut(s)	281, 1301, 1425, 1719, 1955, 1979
PspPPI	RGGWCCY	3 cut(s)	281, 1425, 1719
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	2 cut(s)	17, 1976
PsuI	RGATCY	3 cut(s)	331, 1147, 1195
PsyI	GACNNNGTC	2 cut(s)	19, 1025
PvuII	CAGCTG	3 cut(s)	676, 860, 956
RsaI	GTAC	2 cut(s)	1395, 1808
RsaNI	GTAC	2 cut(s)	1394, 1807
RseI	CAYNNNNRTG	3 cut(s)	326, 476, 923
SaqAI	TTAA	7 cut(s)	62, 78, 248, 854, 1583, 1653, 1767
Sau3AI	GATC	7 cut(s)	331, 727, 921, 981, 1147, 1195, 1813
Sau96I	GGNCC	6 cut(s)	281, 1301, 1425, 1719, 1955, 1979
SchI	GAGTC	8 cut(s)	29, 461, 554, 647, 956, 1664, 1957, 1993
ScrFI	CCNGG	3 cut(s)	242, 276, 1514
SduI	GDGCHC	2 cut(s)	1298, 1494
SfaNI	GCATC	3 cut(s)	527, 697, 1534
SfcI	CTRYAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	1128
SinI	GGWCC	5 cut(s)	281, 1425, 1719, 1955, 1979
SmiMI	CAYNNNNRTG	3 cut(s)	326, 476, 923
SmlI	CTYRAG	3 cut(s)	247, 655, 1466
SmoI	CTYRAG	3 cut(s)	247, 655, 1466
SphI	GCATGC	2 cut(s)	1555, 1559
SseBI	AGGCCT	2 cut(s)	290, 357
SsiI	CCGC	4 cut(s)	1145, 1724, 1896, 1973
SspMI	CTAG	3 cut(s)	299, 611, 2004
StuI	AGGCCT	2 cut(s)	290, 357
StyD4I	CCNGG	3 cut(s)	240, 274, 1512
StyI	CCWWGG	2 cut(s)	1827, 2003
TaaI	ACNGT	5 cut(s)	507, 1025, 1774, 1848, 1952
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	5 cut(s)	1128, 1538, 1713, 1851, 1938
TauI	GCSGC	1 cut(s)	1976
TfiI	GAWTC	6 cut(s)	8, 219, 1415, 1457, 1690, 1942
Tru1I	TTAA	7 cut(s)	62, 78, 248, 854, 1583, 1653, 1767
Tru9I	TTAA	7 cut(s)	62, 78, 248, 854, 1583, 1653, 1767
TscAI	CASTG	5 cut(s)	895, 1030, 1095, 1777, 1957
TseFI	GTSAC	2 cut(s)	137, 641
Tsp45I	GTSAC	2 cut(s)	137, 641
TspDTI	ATGAA	9 cut(s)	99, 227, 243, 792, 879, 1261, 1302, 1584, 1671
TspGWI	ACGGA	2 cut(s)	991, 1149
TspRI	CASTG	5 cut(s)	895, 1030, 1095, 1777, 1957
Tth111I	GACNNNGTC	2 cut(s)	19, 1025
Van91I	CCANNNNNTGG	1 cut(s)	599
Vha464I	CTTAAG	1 cut(s)	247
VpaK11BI	GGWCC	5 cut(s)	281, 1425, 1719, 1955, 1979
XapI	RAATTY	2 cut(s)	1822, 2017
XceI	RCATGY	3 cut(s)	1072, 1555, 1559
XmaJI	CCTAGG	1 cut(s)	2003
XmnI	GAANNNNTTC	3 cut(s)	432, 519, 1372
XspI	CTAG	3 cut(s)	299, 611, 2004
Zsp2I	ATGCAT	2 cut(s)	1557, 1636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.