Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003856

Physical Location & Seq

Genomic Coordinates Reverse (-)

36129377 .. 36132891

Gene Structure 3515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGTGGGAATCAGAGACTGAGTCAGTTGGAGGCAGAGATTATGGCAATGGAGATTTTAGTTTAAGAAAGCAGAGTGTTAAGAATGATGGGTTTGAACTAAAAGGCAATTCATGGTATGTTGCAACTGATATCCCAAGTGACCTGTTGGTTCAAGTTGGAGAAGTCAATTTTCACTTGCATAAGTATCCCTTGCTGTCAAGGAGTGGAAAGATGAACAGAATCATGTATGAATTACGAGACCCGGACTTAAGTAAGATGGTTTTGGATGACCTTCCTGGGGGACCTGAGGCCTTTGAGCTAGCTGCAAAGTTCTGCTATGGCATTTCTGTGGATCTGACAGCAGCCAACATTTCAGGCCTCAGATGTGCTGCAGAGTTCCTTGAAATGACAGAGGACTTGGAAGAAGGCAATCTTATTTTCAAAACCGAAGCATTTCTCAGCTATGTGGTTTTGTCCTCATGGAGAGATTCCATATTAGTGTTGAAAAGTTGCGAGAAGCTCTCACCGTGGGCTGAAAACCTTCAAATTGTTCGGAGATGCAGCGAGTCTATTGCTTGGAAAGCCTGTGCCAATCCCAAAGGGATACGATGGCCATATACTGGTAGTAAGCAAGCTCCAAAAGTTTCAAGCCCAAATTGGAGTGACGTGAAGGACTCAAGTCCAAGTAGAAACCAGCAGCAAGTTCCTCCTGATTGGTGGTTTGAAGATGCTTCAATTCTTCGGATTGATCACTATGTCAAGGTTATTACTGCAATCAAGGTGAAGGGGATGAGATATGAACTGCTAGGAGCTGCAATAATGCACTATGCAGCTAAATGGCTCCCTATTATGATAAGTGAGCATGGCTCTGGGTTAACAGCTGATGAAGGAAGCAACAGCAGCAGTAGCAGTGGAAGCAGTTGGAAGGGTGGACTTCACATGATCGTGGCAGGAACTAAAGATAATGAGTCTTCAGCTGTTCAGGCTGTTCAGGCCAAAGATCAACGGATGATCATCGAGAGCCTTATTAGCATAATTCCACCACAGAAGGACAGTGTCTCATGTAGCTTCCTTCTTCGGCTTCTGAGAATGGCAAACATGTTGAAAGTAGCACCTGCACTGGTTACTGAGTTGGAGAAACGGGTGGGAATGCAGTTCGAACAGGCTACATTGTCGGATCTTCTCATTCCGTCTTACAACAAAAGCGAAACTATGTGTGATGTGGATCTTGTCCAGAGGCTTCTGGAGCATTTTCTTGTTCAAGAACAGACTGAAATGTCAAGTCCAAGCCACCAATCTTTCATTGAAAAACACTATGAAAGGGGCACAGGCCCAAATGCTAAGATGAGGGTAGCCAAGCTTGTTGATAGTTATCTTACAGAGGTGTCAAGAGATAGAAGCCTTTCCCTAACAAAGTTTCAGGTACTCGCAGAAGCTTTGCCTGAATCTGCAAGGACCTGTGATGATGGACTTTATAGAGCAATTGATTCCTATCTCAAGGCTCACCCAACACTCTCTGAGCACGAAAGAAAGAGGCTATGCCGGGTAATGGATTGCCAAAAGCTGTCGATTGATGCTTGCATGCATGCTGCACAAAATGAAAGGCTCCCATTAAGAGTGGTGGTGCAAGTTCTTTTCTCTGAGCAAGTCAAAATAAGCAATGCATTGGCCAACAATGCCCTTAATGAAGCGGGAGGAGACTCTAACTATCAGCCAATGATTCCAAATCGGAGAACACTACTCGAAGGGACCCCGCAATCCTTCCAAGAAGGATGGGCTGCAGCTAAAAAGGACATTAACACTGTAAAGTTTGAACTGGAGAGTGTAAAAGCAAAGTACCTTGATCTCCAAAATTCCATGGAAAACTTGCAGAGACAGTTCGATAAGATGACCTCAAAGCAGAAACATACATCAGCTTGGAGCAGCGGATGGAAGAAACTCGGCAAACTCACTAAGACTACAATGTTCGAGAATCAGAACAGTGGACCGGAGACTCCAACAGCGGGTGGTCCCGAGCAGACAAGAAAGACAACTAGGAGGTGGAGGAATTCCATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

679

Amino Acids

76.21

Weight (kDa)

7.19

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	231 - 520	1.3e-98	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64330 AT5G64330 AT5G64330
fragaria_vesca	FvH4_5g25720 FvH4_5g25720 FvH4_5g25720
malus_domestica	MD05G1047100.v1.1 MD10G1053800.v1.1
prunus_persica	Prupe.8G067500_v2.0.a1 Prupe.8G067500_v2.0.a1
pyrus_communis	pycom10g04060
rosa_chinensis	RchiOBHm_Chr6g0271301 RchiOBHm_Chr7g0216061
rosa_laevigata	RLG00000002597 RLG00000013726
rosa_multiflora	Rmu_sc0002356.1_g000004 Rmu_sc0004866.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243680 Rroxscaffold_7G00197120
rosa_rugosa	Rorug06G0059500 Rorug06G0059600 Rorug06G0059700 Rorug07G0158400 Rorug07G0158500 Rorug07G0158600
rosa_samantha	Rh6AG179400 Rh6BG182500 Rh6CG179400 Rh6DG171100 Rh7AG295600 Rh7CG316000
rosa_wichuraiana	Rw6G015410 Rw6G015430 Rw7G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1102
AasI	GACNNNNNNGTC	1 cut(s)	1255
Acc36I	ACCTGC	1 cut(s)	1102
AccB7I	CCANNNNNTGG	1 cut(s)	599
AciI	CCGC	4 cut(s)	1670, 1733, 1905, 1982
AclWI	GGATC	3 cut(s)	339, 1164, 1212
AcoI	YGGCCR	2 cut(s)	590, 1647
AcsI	RAATTY	2 cut(s)	1831, 2026
AcuI	CTGAAG	1 cut(s)	936
AfaI	GTAC	2 cut(s)	1404, 1817
AfiI	CCNNNNNNNGG	4 cut(s)	277, 599, 1528, 1982
AflII	CTTAAG	1 cut(s)	247
AflIII	ACRYGT	1 cut(s)	1077
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	274
Alw21I	GWGCWC	1 cut(s)	1503
Alw26I	GTCTC	6 cut(s)	8, 231, 1042, 1671, 1846, 1964
AlwI	GGATC	3 cut(s)	339, 1164, 1212
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	1991
AoxI	GGCC	6 cut(s)	288, 355, 590, 972, 1309, 1647
ApoI	RAATTY	2 cut(s)	1831, 2026
Asp700I	GAANNNNTTC	3 cut(s)	432, 519, 1381
AspS9I	GGNCC	6 cut(s)	281, 1310, 1434, 1728, 1964, 1988
AsuC2I	CCSGG	2 cut(s)	242, 1523
AsuHPI	GGTGA	3 cut(s)	495, 772, 1475
AsuII	TTCGAA	1 cut(s)	1137
AsuNHI	GCTAGC	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	1991
AvaII	GGWCC	5 cut(s)	281, 1434, 1728, 1964, 1988
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	1307
BalI	TGGCCA	2 cut(s)	592, 1649
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	1 cut(s)	1503
BccI	CCATC	6 cut(s)	80, 250, 582, 1439, 1746, 1902
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	2 cut(s)	195, 576
BclI	TGATCA	2 cut(s)	727, 990
BcnI	CCSGG	2 cut(s)	242, 1523
BcoDI	GTCTC	6 cut(s)	8, 231, 1042, 1671, 1846, 1964
BfaI	CTAG	3 cut(s)	299, 785, 2013
BfmI	CTRYAG	2 cut(s)	369, 1758
BfrI	CTTAAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	1102
BfuI	GTATCC	2 cut(s)	195, 576
Bme1390I	CCNGG	3 cut(s)	242, 276, 1523
Bme18I	GGWCC	5 cut(s)	281, 1434, 1728, 1964, 1988
BmeT110I	CYCGRG	1 cut(s)	1991
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	6 cut(s)	281, 1310, 1434, 1728, 1964, 1988
BmiI	GGNNCC	6 cut(s)	282, 821, 1586, 1729, 1730, 1990
BmrFI	CCNGG	3 cut(s)	242, 276, 1523
BmsI	GCATC	3 cut(s)	527, 697, 1543
BmtI	GCTAGC	1 cut(s)	302
BoxI	GACNNNNGTC	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	942
BplI	GAGNNNNNCTC	4 cut(s)	485, 517, 830, 862
BpmI	CTGGAG	2 cut(s)	1244, 1817
Bpu14I	TTCGAA	1 cut(s)	1137
BpuEI	CTTGAG	2 cut(s)	640, 1460
BpuMI	CCSGG	2 cut(s)	242, 1523
BsaBI	GATNNNNATC	4 cut(s)	992, 1203, 1350, 1470
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	275, 506, 1836
BsaWI	WCCGGW	1 cut(s)	1966
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 599, 1528, 1982
Bse1I	ACTGG	3 cut(s)	604, 1104, 1800
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	2 cut(s)	52, 1645
Bse8I	GATNNNNATC	4 cut(s)	992, 1203, 1350, 1470
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	275, 506, 1836
BseGI	GGATG	5 cut(s)	271, 774, 993, 1757, 1913
BseJI	GATNNNNATC	4 cut(s)	992, 1203, 1350, 1470
BseLI	CCNNNNNNNGG	4 cut(s)	277, 599, 1528, 1982
BseMI	GCAATG	2 cut(s)	52, 1645
BseMII	CTCAG	8 cut(s)	9, 276, 373, 451, 1055, 1098, 1488, 1611
BseNI	ACTGG	3 cut(s)	604, 1104, 1800
BseRI	GAGGAG	1 cut(s)	1689
BseSI	GKGCMC	1 cut(s)	1307
BsgI	GTGCAG	2 cut(s)	1080, 1554
BshFI	GGCC	6 cut(s)	290, 357, 592, 974, 1311, 1649
BsiHKAI	GWGCWC	1 cut(s)	1503
BsiHKCI	CYCGRG	1 cut(s)	1991
BsiSI	CCGG	3 cut(s)	242, 1522, 1967
BslFI	GGGAC	3 cut(s)	294, 1741, 1974
BslI	CCNNNNNNNGG	4 cut(s)	277, 599, 1528, 1982
BsmAI	GTCTC	6 cut(s)	8, 231, 1042, 1671, 1846, 1964
BsmFI	GGGAC	3 cut(s)	294, 1741, 1974
BsmI	GAATGC	1 cut(s)	1134
BsnI	GGCC	6 cut(s)	290, 357, 592, 974, 1311, 1649
Bso31I	GGTCTC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	1991
Bsp119I	TTCGAA	1 cut(s)	1137
Bsp1286I	GDGCHC	2 cut(s)	1307, 1503
Bsp143I	GATC	8 cut(s)	331, 727, 921, 979, 990, 1156, 1204, 1822
Bsp19I	CCATGG	1 cut(s)	1836
BspACI	CCGC	4 cut(s)	1670, 1733, 1905, 1982
BspANI	GGCC	6 cut(s)	290, 357, 592, 974, 1311, 1649
BspCNI	CTCAG	8 cut(s)	10, 277, 372, 450, 1056, 1099, 1489, 1612
BspLI	GGNNCC	6 cut(s)	282, 821, 1586, 1729, 1730, 1990
BspMAI	CTGCAG	2 cut(s)	373, 1762
BspMI	ACCTGC	1 cut(s)	1102
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	3 cut(s)	339, 1164, 1212
BspT104I	TTCGAA	1 cut(s)	1137
BspTI	CTTAAG	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	231
BsrDI	GCAATG	2 cut(s)	52, 1645
BsrI	ACTGG	3 cut(s)	604, 1104, 1800
BssECI	CCNNGG	3 cut(s)	275, 506, 1836
BssMI	GATC	8 cut(s)	331, 727, 921, 979, 990, 1156, 1204, 1822
BssT1I	CCWWGG	1 cut(s)	1836
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	5 cut(s)	507, 1034, 1783, 1857, 1961
BstAFI	CTTAAG	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	1137
BstC8I	GCNNGC	5 cut(s)	300, 612, 1558, 1562, 1566
BstDSI	CCRYGG	2 cut(s)	506, 1836
BstF5I	GGATG	5 cut(s)	271, 774, 993, 1757, 1913
BstKTI	GATC	8 cut(s)	334, 730, 924, 982, 993, 1159, 1207, 1825
BstMAI	GTCTC	6 cut(s)	8, 231, 1042, 1671, 1846, 1964
BstMBI	GATC	8 cut(s)	331, 727, 921, 979, 990, 1156, 1204, 1822
BstMWI	GCNNNNNNNGC	9 cut(s)	560, 879, 885, 894, 962, 971, 1008, 1225, 1655
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	3 cut(s)	1081, 1564, 1568
BstPAI	GACNNNNGTC	1 cut(s)	657
BstSCI	CCNGG	3 cut(s)	240, 274, 1521
BstSFI	CTRYAG	2 cut(s)	369, 1758
BstSLI	GKGCMC	1 cut(s)	1307
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	3 cut(s)	331, 1156, 1204
BstYI	RGATCY	3 cut(s)	331, 1156, 1204
Bsu36I	CCTNAGG	1 cut(s)	285
BsuI	GTATCC	2 cut(s)	195, 576
BsuRI	GGCC	6 cut(s)	290, 357, 592, 974, 1311, 1649
BtgI	CCRYGG	2 cut(s)	506, 1836
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	5 cut(s)	271, 774, 993, 1757, 1913
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	5 cut(s)	895, 1039, 1097, 1779, 1966
BveI	ACCTGC	1 cut(s)	1102
Cac8I	GCNNGC	5 cut(s)	300, 612, 1558, 1562, 1566
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	6 cut(s)	281, 1310, 1434, 1728, 1964, 1988
Csp6I	GTAC	2 cut(s)	1403, 1816
CviQI	GTAC	2 cut(s)	1403, 1816
DpnI	GATC	8 cut(s)	333, 729, 923, 981, 992, 1158, 1206, 1824
DpnII	GATC	8 cut(s)	331, 727, 921, 979, 990, 1156, 1204, 1822
DrdI	GACNNNNNNGTC	1 cut(s)	1255
DseDI	GACNNNNNNGTC	1 cut(s)	1255
EaeI	YGGCCR	2 cut(s)	590, 1647
Eco130I	CCWWGG	1 cut(s)	1836
Eco147I	AGGCCT	2 cut(s)	290, 357
Eco31I	GGTCTC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	5 cut(s)	281, 1434, 1728, 1964, 1988
Eco57I	CTGAAG	1 cut(s)	936
Eco81I	CCTNAGG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	1991
EcoO109I	RGGNCCY	3 cut(s)	281, 1434, 1728
EcoRI	GAATTC	1 cut(s)	2026
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	1836
EcoT22I	ATGCAT	2 cut(s)	1566, 1645
ErhI	CCWWGG	1 cut(s)	1836
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 396, 428
FaqI	GGGAC	3 cut(s)	294, 1741, 1974
FauI	CCCGC	3 cut(s)	1663, 1740, 1975
FbaI	TGATCA	2 cut(s)	727, 990
FokI	GGATG	5 cut(s)	278, 781, 1000, 1764, 1920
FspBI	CTAG	3 cut(s)	299, 785, 2013
GsuI	CTGGAG	2 cut(s)	1244, 1817
HaeIII	GGCC	6 cut(s)	290, 357, 592, 974, 1311, 1649
HapII	CCGG	3 cut(s)	242, 1522, 1967
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HindIII	AAGCTT	2 cut(s)	1337, 1413
HpaI	GTTAAC	1 cut(s)	855
HpaII	CCGG	3 cut(s)	242, 1522, 1967
HphI	GGTGA	3 cut(s)	495, 772, 1475
Hpy166II	GTNNAC	3 cut(s)	855, 911, 1964
Hpy188III	TCNNGA	8 cut(s)	689, 997, 1213, 1223, 1241, 1368, 1948, 1991
Hpy8I	GTNNAC	3 cut(s)	855, 911, 1964
HpyCH4III	ACNGT	5 cut(s)	507, 1034, 1783, 1857, 1961
HpyCH4IV	ACGT	1 cut(s)	645
HpyF10VI	GCNNNNNNNGC	9 cut(s)	560, 879, 885, 894, 962, 971, 1008, 1225, 1655
HpySE526I	ACGT	1 cut(s)	645
KflI	GGGWCCC	1 cut(s)	1728
Ksp22I	TGATCA	2 cut(s)	727, 990
KspAI	GTTAAC	1 cut(s)	855
Kzo9I	GATC	8 cut(s)	331, 727, 921, 979, 990, 1156, 1204, 1822
LmnI	GCTCC	6 cut(s)	619, 788, 825, 1225, 1590, 1899
LweI	GCATC	3 cut(s)	527, 697, 1543
MaeI	CTAG	3 cut(s)	299, 785, 2013
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	3 cut(s)	137, 641, 1102
MalI	GATC	8 cut(s)	333, 729, 923, 981, 992, 1158, 1206, 1824
MboI	GATC	8 cut(s)	331, 727, 921, 979, 990, 1156, 1204, 1822
MboII	GAAGA	7 cut(s)	413, 710, 716, 942, 1046, 1151, 1924
MfeI	CAATTG	1 cut(s)	1461
MflI	RGATCY	3 cut(s)	331, 1156, 1204
MhlI	GDGCHC	2 cut(s)	1307, 1503
MlsI	TGGCCA	2 cut(s)	592, 1649
MluNI	TGGCCA	2 cut(s)	592, 1649
MlyI	GAGTC	6 cut(s)	29, 554, 647, 956, 1673, 1966
MmeI	TCCRAC	6 cut(s)	7, 136, 881, 1092, 1134, 2000
Mox20I	TGGCCA	2 cut(s)	592, 1649
Mph1103I	ATGCAT	2 cut(s)	1566, 1645
MroXI	GAANNNNTTC	3 cut(s)	432, 519, 1381
MscI	TGGCCA	2 cut(s)	592, 1649
MseI	TTAA	7 cut(s)	62, 78, 248, 854, 1592, 1662, 1776
MslI	CAYNNNNRTG	3 cut(s)	326, 476, 923
Msp20I	TGGCCA	2 cut(s)	592, 1649
MspA1I	CMGCKG	4 cut(s)	860, 956, 1905, 1982
MspCI	CTTAAG	1 cut(s)	247
MspI	CCGG	3 cut(s)	242, 1522, 1967
MspR9I	CCNGG	3 cut(s)	242, 276, 1523
MunI	CAATTG	1 cut(s)	1461
Mva1269I	GAATGC	1 cut(s)	1134
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	9 cut(s)	560, 879, 885, 894, 962, 971, 1008, 1225, 1655
NciI	CCSGG	2 cut(s)	242, 1523
NcoI	CCATGG	1 cut(s)	1836
NdeII	GATC	8 cut(s)	331, 727, 921, 979, 990, 1156, 1204, 1822
NheI	GCTAGC	1 cut(s)	298
NlaIV	GGNNCC	6 cut(s)	282, 821, 1586, 1729, 1730, 1990
NmeAIII	GCCGAG	1 cut(s)	1899
NmuCI	GTSAC	2 cut(s)	137, 641
NsiI	ATGCAT	2 cut(s)	1566, 1645
NspI	RCATGY	3 cut(s)	1081, 1564, 1568
NspV	TTCGAA	1 cut(s)	1137
PaeI	GCATGC	2 cut(s)	1564, 1568
PaqCI	CACCTGC	1 cut(s)	1102
PceI	AGGCCT	2 cut(s)	290, 357
PciI	ACATGT	1 cut(s)	1077
PctI	GAATGC	1 cut(s)	1134
PdmI	GAANNNNTTC	3 cut(s)	432, 519, 1381
PfeI	GAWTC	7 cut(s)	8, 219, 467, 1424, 1466, 1699, 1951
PflFI	GACNNNGTC	2 cut(s)	19, 1034
PflMI	CCANNNNNTGG	1 cut(s)	599
PleI	GAGTC	6 cut(s)	28, 553, 647, 955, 1673, 1966
PpsI	GAGTC	6 cut(s)	28, 553, 647, 955, 1673, 1966
PpuMI	RGGWCCY	3 cut(s)	281, 1434, 1728
PscI	ACATGT	1 cut(s)	1077
PshAI	GACNNNNGTC	1 cut(s)	657
Psp5II	RGGWCCY	3 cut(s)	281, 1434, 1728
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	6 cut(s)	282, 821, 1586, 1729, 1730, 1990
PspPI	GGNCC	6 cut(s)	281, 1310, 1434, 1728, 1964, 1988
PspPPI	RGGWCCY	3 cut(s)	281, 1434, 1728
PstI	CTGCAG	2 cut(s)	373, 1762
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	3 cut(s)	331, 1156, 1204
PsyI	GACNNNGTC	2 cut(s)	19, 1034
PvuII	CAGCTG	2 cut(s)	860, 956
RsaI	GTAC	2 cut(s)	1404, 1817
RsaNI	GTAC	2 cut(s)	1403, 1816
RseI	CAYNNNNRTG	3 cut(s)	326, 476, 923
SaqAI	TTAA	7 cut(s)	62, 78, 248, 854, 1592, 1662, 1776
Sau3AI	GATC	8 cut(s)	331, 727, 921, 979, 990, 1156, 1204, 1822
Sau96I	GGNCC	6 cut(s)	281, 1310, 1434, 1728, 1964, 1988
SchI	GAGTC	6 cut(s)	29, 554, 647, 956, 1673, 1966
ScrFI	CCNGG	3 cut(s)	242, 276, 1523
SduI	GDGCHC	2 cut(s)	1307, 1503
SfaNI	GCATC	3 cut(s)	527, 697, 1543
SfcI	CTRYAG	2 cut(s)	369, 1758
SfuI	TTCGAA	1 cut(s)	1137
SinI	GGWCC	5 cut(s)	281, 1434, 1728, 1964, 1988
SmiMI	CAYNNNNRTG	3 cut(s)	326, 476, 923
SmlI	CTYRAG	3 cut(s)	247, 655, 1475
SmoI	CTYRAG	3 cut(s)	247, 655, 1475
SphI	GCATGC	2 cut(s)	1564, 1568
SseBI	AGGCCT	2 cut(s)	290, 357
SsiI	CCGC	4 cut(s)	1670, 1733, 1905, 1982
SspMI	CTAG	3 cut(s)	299, 785, 2013
StuI	AGGCCT	2 cut(s)	290, 357
StyD4I	CCNGG	3 cut(s)	240, 274, 1521
StyI	CCWWGG	1 cut(s)	1836
TaaI	ACNGT	5 cut(s)	507, 1034, 1783, 1857, 1961
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	6 cut(s)	996, 1137, 1547, 1722, 1860, 1947
TfiI	GAWTC	7 cut(s)	8, 219, 467, 1424, 1466, 1699, 1951
Tru1I	TTAA	7 cut(s)	62, 78, 248, 854, 1592, 1662, 1776
Tru9I	TTAA	7 cut(s)	62, 78, 248, 854, 1592, 1662, 1776
TscAI	CASTG	5 cut(s)	895, 1039, 1104, 1786, 1966
TseFI	GTSAC	2 cut(s)	137, 641
Tsp45I	GTSAC	2 cut(s)	137, 641
TspDTI	ATGAA	9 cut(s)	99, 227, 243, 792, 879, 1270, 1311, 1593, 1680
TspGWI	ACGGA	2 cut(s)	1000, 1158
TspRI	CASTG	5 cut(s)	895, 1039, 1104, 1786, 1966
Tth111I	GACNNNGTC	2 cut(s)	19, 1034
Van91I	CCANNNNNTGG	1 cut(s)	599
Vha464I	CTTAAG	1 cut(s)	247
VpaK11BI	GGWCC	5 cut(s)	281, 1434, 1728, 1964, 1988
XapI	RAATTY	2 cut(s)	1831, 2026
XceI	RCATGY	3 cut(s)	1081, 1564, 1568
XmnI	GAANNNNTTC	3 cut(s)	432, 519, 1381
XspI	CTAG	3 cut(s)	299, 785, 2013
Zsp2I	ATGCAT	2 cut(s)	1566, 1645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.