Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005690

Physical Location & Seq

Genomic Coordinates Reverse (-)

25734590 .. 25736145

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGTGTGGAGAAGCAAGTCATCAGACCCGGCAACGGTCCCAAACCCGCTCCGGGCCAAACCGTCACCGTCCATTGCACCGGATTCGGGAAAGATGGTGATCTATCCCAGAAGTTCTGGAGTACAAAGGACGAGGGACAAAAACCTTTCTCGTTCCAAATCGGTAAAGGTGCTGTGATCAAAGGATGGGATGAAGGCGTTATCGGAATGCAAATTGGAGAGGTTGCTCGCTTGCGGTGCTCATCGGATTACGCATATGGCGCTGGTGGATTTCCGGCATGGGGGATCCAGCCAAACTCTGTTCTCGACTTTGAAATCGAAGTACTGAGCGTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

112

Amino Acids

11.99

Weight (kDa)

5.74

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	15 - 109	1.5e-24	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64350
fragaria_vesca	FvH4_2g11800 FvH4_3g22200 FvH4_3g22200
malus_domestica	MD04G1047400.v1.1
prunus_persica	Prupe.8G067900_v2.0.a1
pyrus_communis	pycom04g04150
rosa_chinensis	RchiOBHm_Chr5g0038161 RchiOBHm_Chr6g0249601
rosa_laevigata	RLG00000013725 RLG00000033836
rosa_multiflora	Rmu_sc0002670.1_g000002 Rmu_sc0006936.1_g000013 Rmu_sc0013555.1_g000001 Rmu_sc0032351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042820 Rroxscaffold_1G00042830 Rroxscaffold_7G00197140
rosa_rugosa	Rorug05G0171100 Rorug06G0059300 Rorug06G0059400
rosa_samantha	Rh5BG262100 Rh5CG294200 Rh5DG271200 Rh6AG003800 Rh6BG006400
rosa_wichuraiana	Rw5G024200 Rw6G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	2 cut(s)	48, 235
AclWI	GGATC	2 cut(s)	280, 293
AfaI	GTAC	2 cut(s)	124, 324
AfiI	CCNNNNNNNGG	4 cut(s)	35, 53, 87, 281
AgsI	TTSAA	1 cut(s)	314
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	280, 293
AoxI	GGCC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	38, 55
AsuC2I	CCSGG	2 cut(s)	30, 54
AsuHPI	GGTGA	2 cut(s)	58, 110
AvaII	GGWCC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	242
BccI	CCATC	2 cut(s)	89, 180
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	2 cut(s)	30, 54
BfoI	RGCGCY	1 cut(s)	264
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	30, 54
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	38, 55
BmiI	GGNNCC	2 cut(s)	40, 287
BmrFI	CCNGG	2 cut(s)	30, 54
BpmI	CTGGAG	1 cut(s)	139
BpuMI	CCSGG	2 cut(s)	30, 54
BsaBI	GATNNNNATC	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 53, 87, 281
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	99
BseGI	GGATG	2 cut(s)	191, 196
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	4 cut(s)	35, 53, 87, 281
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	4 cut(s)	30, 53, 81, 275
BslFI	GGGAC	2 cut(s)	24, 150
BslI	CCNNNNNNNGG	4 cut(s)	35, 53, 87, 281
BsmFI	GGGAC	2 cut(s)	24, 150
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	100, 177, 285
BspACI	CCGC	2 cut(s)	48, 235
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	40, 287
BspPI	GGATC	2 cut(s)	280, 293
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	73
BssMI	GATC	3 cut(s)	100, 177, 285
Bst4CI	ACNGT	3 cut(s)	38, 64, 70
BstC8I	GCNNGC	3 cut(s)	229, 233, 332
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	191, 196
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	3 cut(s)	103, 180, 288
BstMBI	GATC	3 cut(s)	100, 177, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 260
BstSCI	CCNGG	2 cut(s)	28, 52
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	191, 196
Cac8I	GCNNGC	3 cut(s)	229, 233, 332
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	38, 55
Csp6I	GTAC	2 cut(s)	123, 323
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	2 cut(s)	57, 292
CviKI_1	RGCY	2 cut(s)	57, 292
CviQI	GTAC	2 cut(s)	123, 323
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	3 cut(s)	102, 179, 287
DpnII	GATC	3 cut(s)	100, 177, 285
Eco47I	GGWCC	1 cut(s)	38
FaeI	CATG	1 cut(s)	282
FaiI	YATR	3 cut(s)	256, 258, 280
FaqI	GGGAC	2 cut(s)	24, 150
FatI	CATG	1 cut(s)	278
FauI	CCCGC	1 cut(s)	55
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	177
FokI	GGATG	2 cut(s)	198, 203
GlaI	GCGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	4 cut(s)	30, 53, 81, 275
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	4 cut(s)	30, 53, 81, 275
HphI	GGTGA	2 cut(s)	58, 110
Hpy188I	TCNGA	3 cut(s)	26, 206, 247
Hpy188III	TCNNGA	3 cut(s)	88, 118, 305
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	3 cut(s)	38, 64, 70
HpyCH4V	TGCA	3 cut(s)	78, 211, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 260
HpyF3I	CTNAG	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	100, 177, 285
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	43, 66, 94, 103, 122, 249, 288, 302
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	3 cut(s)	102, 179, 287
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	3 cut(s)	100, 177, 285
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	1 cut(s)	213
MnlI	CCTC	2 cut(s)	127, 214
MspI	CCGG	4 cut(s)	30, 53, 81, 275
MspR9I	CCNGG	2 cut(s)	30, 54
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	237, 260
NciI	CCSGG	2 cut(s)	30, 54
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	3 cut(s)	100, 177, 285
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	2 cut(s)	40, 287
NmuCI	GTSAC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	40, 287
PspPI	GGNCC	2 cut(s)	38, 55
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	2 cut(s)	124, 324
RsaNI	GTAC	2 cut(s)	123, 323
Sau3AI	GATC	3 cut(s)	100, 177, 285
Sau96I	GGNCC	2 cut(s)	38, 55
ScaI	AGTACT	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	30, 54
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	3 cut(s)	148, 172, 225
SinI	GGWCC	1 cut(s)	38
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	2 cut(s)	48, 235
StyD4I	CCNGG	2 cut(s)	28, 52
TaaI	ACNGT	3 cut(s)	38, 64, 70
TaqI	TCGA	2 cut(s)	306, 318
TasI	AATT	1 cut(s)	213
TatI	WGTACW	2 cut(s)	122, 322
TfiI	GAWTC	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.